Rorug06G0420600

Produces ATP from ADP in the presence of a proton gradient across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000151
Physical Location & Seq
Reverse (-)
55921247 .. 55926691
5445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0420600.1

Sequence Viewer

Length: 2658 bp
ATGGAGAATTTCACTCTCCCATGCCAATCAAACCCTCTCATTCCCATAATACCCTCCAAACCAGGCAACCCATCAAGACCCGCCGTCACTTTCTCCAGGAAAACCCGCCCAAATCCACCCGTAGACAATTTGAACCTCCTCTGCAGGAACGGCCAGTTCACCGAGGCCATCGCCGTTCTCAACTCCCTTGCCCAAAGTGGGTCCAAGGTACCGCCCACTACTTACATGAACTTACTTCAGTGCTGCATTGACACCAATTCTATTCAACTGGGCCGGAAACTCCATCAGAATATTGATGTGGTTGATAAGGTGAACCCCTTTGTGGAGACAAAGCTGGTGAGCATGTACGCGAAATGTGGCTTCTTGGAAGATGCACGCAAGGTGTTCGACGGAATGCGTGAGAGGAATTTGTACTCTTGGTCGGCCATGATCGGTGCGTGTCTCAGAGACCGGAGGTGGAATGAGGTGGTGGAGCTTTTTGTGTTGATGGTGAGAGACGGAGTTTTGCCGGACTACTTTCTGTTTCCGAAGGTGTTGCAGGCCTGTGGGAACTGTTGTGATTTCGAGGCCTCCAAAATGATACATTCCATGCTGGTGAGGTGCAATTTGAGCGGGACTATACATATAAACAATTCGGTATTGGCGGTTTACGCCAAGTGTGGGAAGTTGAAGTGGGCGAGGAAGTTTTTTGAGAAAATGGAGGTGAGGGATGGGGTGAGTTGGAACACTATTATATCTGGTTATTGCCAGAATGGTGAGAATGAAGAAGCTCGGAGGCTGATTGATGCAATGATCAAACAGGGGATTGAACCGGGGTTGGTCACTTGGAATATATTGATTTCTAGTTTTAATAAGTCGGGGCAGTGTGATGTTGCGATGGAACTGATGAAGAAGATGGAGAACTGTGGGATCACTCCTGATGTGTATACTTGGACTTCTATGATTTCGGGGTTTGCTCAGAACAACAGGACGAATCAGGCATTGGATTTGTGGAAGAAGATGCTTTTGTCAGGGCTACAAGTACAACCAAATGGCATTACTATTGCTAGTGCAATCTCAGCTTGCACATCTTTGAAATCACTGACCAAAGGTTTGGAAATTTATGCTTTTGCTGTGAAGATGGGACTCATTGATGATGTACTCATTGGAAATTCGCTCATTGACATGTTTTCAAAGTGTGGGGACCTGGAAGCTGCTGAGCAAGTCTTTACTATGATCTCAGATAAAGACGTCTACACTTGGAACTCCATGATAGGAGGATATTGCCAAGCTAGGTACTGTGGTAAGGCCTATGAACTGTTCATGAAGATGCAGGAATCAGATGTACATCCTAATGCCATCACGTATAATGTGATGATCACAGGGTACATTCAGAATGGAGATGCTGATCAAGCAATCGATCTCTTCCAAATGATGGAACGAGATGGGAAAGTTAAGCGGAATACAGCATCGTGGAACTCTCTTATTGCTGGTTTTGCTCAACTTGGGGAAATAAATGAGGCACTTAGGATATTCAGGAAGATGCAGGCCTTCAGTGTTAGCCCCAATTCAGTTACTTTGTTGAGTATCCTGCCCGCTTGTGGGAGTTTAGTTGCCATGAAAAAGGTGAAAGAGATCCATGGTAGTGTATTTCGAAGAAATTTGGAGTCTGAAGTCCCTGTTGCAAATTCTCTGATAGACACATATGCAAAATCAGGAAACATAGAGTATTCAAGAACCATATTTGATAGACTGTCATCGAAAGATATTATTACCTGGAACTCGGCAATTTCTGGTTATGTTTTACATGGTCATCCAGATATTGCACTTGATCTTTTTGACCAGATGAAGAAGTTGGGGCTAAAACCAAATAGAGGTACCTTTGCTAGTATTCTATATGCCTACAGTCTTGCTGGGCTGGTAAACGAGGGGACAGAAGCTCTTTCTAGCATCAGTGAAGACTATCAAATAATACCGGGTCCAGAACATTATTCAGCTATTGTAGACCTATATGGACGTTCGGGTAGGCTTCAAGCAGCAACGGGGTTTATTGAAGATATGCCGATAGAACCAGACTCCTCTGTTTGGGCTGCCTTACTTACAGCATGCAGGATTCATGGGAACCTTGGCTTGGCAATTCATGCAGGGGAGCGCTTAATTGACTTGGAACCAGCGAATGTTCTGATTCAACAGTTTTTATTACAGGCATATGCTTTATCCGGGAAGCCGGATGATACCTCAAAGTTGAGAAGGTTTGGAAAAGAGAATGCAACAATAAAAAGATCTCTTGGTCAGTGCTGGATGGAAGTCAACAACACAGTGCATACGTTTGTTGCAGGTGATAGGTCGAAATTATGCTCAAAGTATGTAAACTCGTGGTTACAAGACATAGCAGAAAAGGCAAAAGGACCTGGTTTTCGTTGTGGGCTTGGTGTTGAGGATGAAGAGGAGGGAATCAGCATGGTCCACAGTGAAAAACTTGCACTTGCTTTTGCTCTCATTGGCTCTCCATCTCTACCCAAAAGTATCAGGATAGTAAAAGATCTGAGAATGTGTGGAGATTGCCACAGGACAGCTAAATATATATCAATCGCTTTTGGATGTGATATATATTTAAGTGATTCAAAGTCCTTACACTATTTTAGCAATGGGCGTTGTTCTTGTGGCGATTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017076 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0034220 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:0098655 GO:0098660 GO:0098662 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

885

Amino Acids

98.31

Weight (kDa)

7.64

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 237 - 283 3.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 237 - 281 7.4e-13 PPR repeat family
PPR_1 PF12854 237 - 264 4.4e-07 PPR repeat
PPR PF01535 239 - 269 3.8e-08 PPR repeat
PPR_1 PF12854 268 - 300 2.1e-06 PPR repeat
PPR_2 PF13041 271 - 319 9.9e-14 PPR repeat family
PPR PF01535 274 - 304 7.7e-07 PPR repeat
PPR_1 PF12854 303 - 334 8.9e-08 PPR repeat
PPR_2 PF13041 306 - 355 4.9e-08 PPR repeat family
PPR PF01535 309 - 338 1.3e-06 PPR repeat
PPR_2 PF13041 409 - 456 7e-15 PPR repeat family
PPR_3 PF13812 410 - 456 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 412 - 441 5.5e-08 PPR repeat
PPR_long PF17177 428 - 532 4.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 442 - 473 6.5e-07 PPR repeat
PPR_2 PF13041 444 - 476 1.4e-07 PPR repeat family
PPR PF01535 447 - 476 7.4e-08 PPR repeat
TPR_24 PF23276 458 - 569 5.5e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 481 - 527 5.5e-09 PPR repeat family
PPR PF01535 484 - 510 2.6e-06 PPR repeat
PPR_2 PF13041 581 - 627 8e-11 PPR repeat family
PPR_3 PF13812 582 - 628 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 584 - 614 3.8e-07 PPR repeat
DYW_deaminase PF14432 806 - 885 1.5e-24 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2306
AatII GACGTC 1 cut(s) 1233
Acc36I ACCTGC 1 cut(s) 2306
Acc65I GGTACC 2 cut(s) 208, 1856
AccB1I GGYRCC 2 cut(s) 208, 1856
AccB7I CCANNNNNTGG 1 cut(s) 1414
AccBSI CCGCTC 1 cut(s) 612
AccI GTMKAC 4 cut(s) 123, 926, 1233, 1983
AccII CGCG 1 cut(s) 350
AciI CCGC 7 cut(s) 81, 106, 212, 612, 644, 1438, 1575
AclWI GGATC 2 cut(s) 917, 1609
AcoI YGGCCR 2 cut(s) 151, 423
AcsI RAATTY 6 cut(s) 7, 406, 1098, 1150, 1639, 1666
AcuI CTGAAG 3 cut(s) 221, 1516, 1671
AcyI GRCGYC 1 cut(s) 1230
AfaI GTAC 9 cut(s) 210, 347, 413, 1023, 1140, 1277, 1326, 1367, 1858
AfeI AGCGCT 1 cut(s) 2132
AfiI CCNNNNNNNGG 9 cut(s) 198, 322, 660, 1414, 1580, 1581, 1853, 2064, 2110
AflIII ACRYGT 1 cut(s) 1164
AhdI GACNNNNNGTC 1 cut(s) 83
AjnI CCWGG 5 cut(s) 61, 95, 1185, 1754, 2389
AjuI GAANNNNNNNTTGG 4 cut(s) 965, 997, 2093, 2125
AluBI AGCT 9 cut(s) 334, 475, 770, 1061, 1193, 1271, 1919, 1976, 2555
AluI AGCT 9 cut(s) 334, 475, 770, 1061, 1193, 1271, 1919, 1976, 2555
Alw26I GTCTC 4 cut(s) 320, 441, 446, 489
AlwI GGATC 2 cut(s) 917, 1609
Aor51HI AGCGCT 1 cut(s) 2132
AoxI GGCC 8 cut(s) 151, 165, 271, 423, 540, 567, 1287, 1527
ApeKI GCWGC 4 cut(s) 243, 1193, 2015, 2069
ApoI RAATTY 6 cut(s) 7, 406, 1098, 1150, 1639, 1666
ArsI GACNNNNNNTTYG 4 cut(s) 1075, 1107, 2379, 2411
Asp718I GGTACC 2 cut(s) 208, 1856
AspLEI GCGC 1 cut(s) 2133
AspS9I GGNCC 6 cut(s) 201, 271, 1183, 1958, 2387, 2443
AsuC2I CCSGG 3 cut(s) 813, 1956, 2200
AsuII TTCGAA 1 cut(s) 1633
AvaII GGWCC 5 cut(s) 201, 1183, 1958, 2387, 2443
BaeI ACNNNNGTAYC 2 cut(s) 1267, 1300
BanI GGYRCC 2 cut(s) 208, 1856
BauI CACGAG 1 cut(s) 2353
BbsI GAAGAC 1 cut(s) 1944
BbvI GCAGC 4 cut(s) 230, 1180, 2027, 2056
BceAI ACGGC 3 cut(s) 68, 158, 166
BcgI CGANNNNNNTGC 4 cut(s) 367, 401, 517, 551
BciT130I CCWGG 5 cut(s) 63, 97, 1187, 1756, 2391
BciVI GTATCC 1 cut(s) 1577
BclI TGATCA 3 cut(s) 792, 1356, 1387
BcnI CCSGG 3 cut(s) 813, 1956, 2200
BcoDI GTCTC 4 cut(s) 320, 441, 446, 489
BfaI CTAG 5 cut(s) 843, 1047, 1272, 1866, 1926
BfmI CTRYAG 2 cut(s) 142, 1882
BfoI RGCGCY 1 cut(s) 2134
BfuAI ACCTGC 1 cut(s) 2306
BfuI GTATCC 1 cut(s) 1577
BglII AGATCT 2 cut(s) 2261, 2521
BisI GCNGC 4 cut(s) 244, 1194, 2016, 2070
BlpI GCTNAGC 1 cut(s) 1197
BlsI GCNGC 4 cut(s) 245, 1195, 2017, 2071
Bme1390I CCNGG 8 cut(s) 63, 97, 813, 1187, 1756, 1956, 2200, 2391
Bme18I GGWCC 5 cut(s) 201, 1183, 1958, 2387, 2443
BmeRI GACNNNNNGTC 1 cut(s) 83
BmgT120I GGNCC 6 cut(s) 201, 271, 1183, 1958, 2387, 2443
BmiI GGNNCC 7 cut(s) 202, 210, 1184, 1858, 1959, 2102, 2148
BmrFI CCNGG 8 cut(s) 63, 97, 813, 1187, 1756, 1956, 2200, 2391
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 8 cut(s) 361, 775, 990, 1299, 1372, 1457, 1512, 1938
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 1944
BpmI CTGGAG 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 1197
Bpu14I TTCGAA 1 cut(s) 1633
BpuMI CCSGG 3 cut(s) 813, 1956, 2200
Bsa29I ATCGAT 1 cut(s) 1398
BsaAI YACGTR 1 cut(s) 1344
BsaBI GATNNNNATC 2 cut(s) 1326, 1386
BsaHI GRCGYC 1 cut(s) 1230
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 162, 204, 812, 1618, 2104
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 9 cut(s) 198, 322, 660, 1414, 1580, 1581, 1853, 2064, 2110
Bse1I ACTGG 2 cut(s) 154, 273
Bse3DI GCAATG 2 cut(s) 795, 2632
Bse8I GATNNNNATC 2 cut(s) 1326, 1386
BseBI CCWGG 5 cut(s) 63, 97, 1187, 1756, 2391
BseCI ATCGAT 1 cut(s) 1398
BseDI CCNNGG 5 cut(s) 162, 204, 812, 1618, 2104
BseGI GGATG 7 cut(s) 715, 1327, 1792, 2215, 2286, 2425, 2585
BseJI GATNNNNATC 2 cut(s) 1326, 1386
BseLI CCNNNNNNNGG 9 cut(s) 198, 322, 660, 1414, 1580, 1581, 1853, 2064, 2110
BseMI GCAATG 2 cut(s) 795, 2632
BseMII CTCAG 6 cut(s) 457, 971, 1071, 1188, 1233, 2516
BseNI ACTGG 2 cut(s) 154, 273
BseRI GAGGAG 3 cut(s) 128, 2047, 2441
BseXI GCAGC 4 cut(s) 230, 1180, 2027, 2056
BseYI CCCAGC 1 cut(s) 1892
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 8 cut(s) 153, 167, 273, 425, 542, 569, 1289, 1529
BshNI GGYRCC 2 cut(s) 208, 1856
BshVI ATCGAT 1 cut(s) 1398
BsiSI CCGG 7 cut(s) 274, 451, 509, 812, 1955, 2199, 2207
BslFI GGGAC 5 cut(s) 628, 1137, 1196, 1640, 1924
BslI CCNNNNNNNGG 9 cut(s) 198, 322, 660, 1414, 1580, 1581, 1853, 2064, 2110
BsmAI GTCTC 4 cut(s) 320, 441, 446, 489
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 5 cut(s) 628, 1137, 1196, 1640, 1924
BsmI GAATGC 2 cut(s) 399, 2251
BsnI GGCC 8 cut(s) 153, 167, 273, 425, 542, 569, 1289, 1529
Bso31I GGTCTC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 1633
Bsp1407I TGTACA 1 cut(s) 1324
Bsp1720I GCTNAGC 1 cut(s) 1197
Bsp19I CCATGG 1 cut(s) 1618
BspACI CCGC 7 cut(s) 81, 106, 212, 612, 644, 1438, 1575
BspANI GGCC 8 cut(s) 153, 167, 273, 425, 542, 569, 1289, 1529
BspCNI CTCAG 6 cut(s) 456, 970, 1070, 1189, 1232, 2517
BspDI ATCGAT 1 cut(s) 1398
BspFNI CGCG 1 cut(s) 350
BspHI TCATGA 1 cut(s) 1302
BspLI GGNNCC 7 cut(s) 202, 210, 1184, 1858, 1959, 2102, 2148
BspMAI CTGCAG 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 2306
BspPI GGATC 2 cut(s) 917, 1609
BspT104I TTCGAA 1 cut(s) 1633
BspT107I GGYRCC 2 cut(s) 208, 1856
BspTNI GGTCTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 612
BsrDI GCAATG 2 cut(s) 795, 2632
BsrGI TGTACA 1 cut(s) 1324
BsrI ACTGG 2 cut(s) 154, 273
BssECI CCNNGG 5 cut(s) 162, 204, 812, 1618, 2104
BssNAI GTATAC 1 cut(s) 927
BssNI GRCGYC 1 cut(s) 1230
BssSI CACGAG 1 cut(s) 2353
BssT1I CCWWGG 3 cut(s) 204, 1618, 2104
Bst1107I GTATAC 1 cut(s) 927
Bst2BI CACGAG 1 cut(s) 2353
Bst2UI CCWGG 5 cut(s) 63, 97, 1187, 1756, 2391
Bst4CI ACNGT 9 cut(s) 554, 905, 1280, 1299, 1734, 1886, 2172, 2299, 2450
Bst6I CTCTTC 2 cut(s) 1409, 2418
BstACI GRCGYC 1 cut(s) 1230
BstAPI GCANNNNNTGC 1 cut(s) 2120
BstAUI TGTACA 1 cut(s) 1324
BstBAI YACGTR 1 cut(s) 1344
BstBI TTCGAA 1 cut(s) 1633
BstC8I GCNNGC 6 cut(s) 376, 540, 1063, 1527, 1575, 2086
BstDEI CTNAG 7 cut(s) 443, 957, 1057, 1197, 1219, 1505, 2525
BstDSI CCRYGG 1 cut(s) 1618
BstF5I GGATG 7 cut(s) 715, 1327, 1792, 2215, 2286, 2425, 2585
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 2134
BstHHI GCGC 1 cut(s) 2133
BstMAI GTCTC 4 cut(s) 320, 441, 446, 489
BstMWI GCNNNNNNNGC 8 cut(s) 150, 609, 650, 1058, 1391, 1475, 2120, 2378
BstNI CCWGG 5 cut(s) 63, 97, 1187, 1756, 2391
BstNSI RCATGY 3 cut(s) 346, 1168, 2088
BstSCI CCNGG 8 cut(s) 61, 95, 811, 1185, 1754, 1954, 2198, 2389
BstSFI CTRYAG 2 cut(s) 142, 1882
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 4 cut(s) 230, 1180, 2027, 2056
BstV2I GAAGAC 1 cut(s) 1944
BstX2I RGATCY 3 cut(s) 1614, 2261, 2521
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 3 cut(s) 1614, 2261, 2521
BstZ17I GTATAC 1 cut(s) 927
Bsu15I ATCGAT 1 cut(s) 1398
BsuI GTATCC 1 cut(s) 1577
BsuRI GGCC 8 cut(s) 153, 167, 273, 425, 542, 569, 1289, 1529
BsuTUI ATCGAT 1 cut(s) 1398
BtgI CCRYGG 1 cut(s) 1618
BtgZI GCGATG 2 cut(s) 154, 890
BtsCI GGATG 7 cut(s) 715, 1327, 1792, 2215, 2286, 2425, 2585
BtsI GCAGTG 1 cut(s) 869
BtsIMutI CAGTG 8 cut(s) 245, 869, 1079, 1540, 1939, 2279, 2304, 2455
BveI ACCTGC 1 cut(s) 2306
Cac8I GCNNGC 6 cut(s) 376, 540, 1063, 1527, 1575, 2086
CciI TCATGA 1 cut(s) 1302
CfoI GCGC 1 cut(s) 2133
Cfr13I GGNCC 6 cut(s) 201, 271, 1183, 1958, 2387, 2443
ClaI ATCGAT 1 cut(s) 1398
CsiI ACCWGGT 1 cut(s) 2389
Csp6I GTAC 9 cut(s) 209, 346, 412, 1022, 1139, 1276, 1325, 1366, 1857
CviQI GTAC 9 cut(s) 209, 346, 412, 1022, 1139, 1276, 1325, 1366, 1857
DdeI CTNAG 7 cut(s) 443, 957, 1057, 1197, 1219, 1505, 2525
DriI GACNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 151, 423
Eam1104I CTCTTC 2 cut(s) 1409, 2418
Eam1105I GACNNNNNGTC 1 cut(s) 83
EarI CTCTTC 2 cut(s) 1409, 2418
Eco130I CCWWGG 3 cut(s) 204, 1618, 2104
Eco147I AGGCCT 4 cut(s) 542, 569, 1289, 1529
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 5 cut(s) 201, 1183, 1958, 2387, 2443
Eco47III AGCGCT 1 cut(s) 2132
Eco57I CTGAAG 3 cut(s) 221, 1516, 1671
EcoO109I RGGNCCY 2 cut(s) 1183, 2387
EcoRII CCWGG 5 cut(s) 61, 95, 1185, 1754, 2389
EcoT14I CCWWGG 3 cut(s) 204, 1618, 2104
ErhI CCWWGG 3 cut(s) 204, 1618, 2104
Esp3I CGTCTC 1 cut(s) 489
FaqI GGGAC 5 cut(s) 628, 1137, 1196, 1640, 1924
FauI CCCGC 4 cut(s) 88, 113, 605, 1582
FauNDI CATATG 2 cut(s) 1684, 2188
FbaI TGATCA 3 cut(s) 792, 1356, 1387
FblI GTMKAC 4 cut(s) 123, 926, 1233, 1983
Fnu4HI GCNGC 4 cut(s) 244, 1194, 2016, 2070
FokI GGATG 7 cut(s) 722, 1314, 1779, 2222, 2293, 2432, 2592
Fsp4HI GCNGC 4 cut(s) 244, 1194, 2016, 2070
FspBI CTAG 5 cut(s) 843, 1047, 1272, 1866, 1926
GlaI GCGC 1 cut(s) 2132
GluI GCNGC 4 cut(s) 244, 1194, 2016, 2070
GsaI CCCAGC 1 cut(s) 1896
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 2134
HaeIII GGCC 8 cut(s) 153, 167, 273, 425, 542, 569, 1289, 1529
HapII CCGG 7 cut(s) 274, 451, 509, 812, 1955, 2199, 2207
HhaI GCGC 1 cut(s) 2133
Hin1I GRCGYC 1 cut(s) 1230
Hin6I GCGC 1 cut(s) 2131
HinP1I GCGC 1 cut(s) 2131
HincII GTYRAC 1 cut(s) 2290
HindII GTYRAC 1 cut(s) 2290
HinfI GANTC 9 cut(s) 973, 1125, 1316, 1646, 2054, 2092, 2164, 2433, 2600
HpaII CCGG 7 cut(s) 274, 451, 509, 812, 1955, 2199, 2207
Hpy188III TCNNGA 9 cut(s) 75, 917, 1303, 1516, 1695, 1713, 1796, 1961, 2509
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 3 cut(s) 523, 1540, 2223
HpyCH4III ACNGT 9 cut(s) 554, 905, 1280, 1299, 1734, 1886, 2172, 2299, 2450
HpyCH4IV ACGT 4 cut(s) 1230, 1343, 1996, 2306
HpyF10VI GCNNNNNNNGC 8 cut(s) 150, 609, 650, 1058, 1391, 1475, 2120, 2378
HpyF3I CTNAG 7 cut(s) 443, 957, 1057, 1197, 1219, 1505, 2525
HpySE526I ACGT 4 cut(s) 1230, 1343, 1996, 2306
Hsp92I GRCGYC 1 cut(s) 1230
HspAI GCGC 1 cut(s) 2131
KpnI GGTACC 2 cut(s) 212, 1860
Ksp22I TGATCA 3 cut(s) 792, 1356, 1387
LmnI GCTCC 2 cut(s) 472, 2128
Lsp1109I GCAGC 4 cut(s) 230, 1180, 2027, 2056
LweI GCATC 8 cut(s) 361, 775, 990, 1299, 1372, 1457, 1512, 1938
MabI ACCWGGT 1 cut(s) 2389
MaeI CTAG 5 cut(s) 843, 1047, 1272, 1866, 1926
MaeII ACGT 4 cut(s) 1230, 1343, 1996, 2306
MaeIII GTNAC 4 cut(s) 85, 820, 1552, 2358
MbiI CCGCTC 1 cut(s) 612
MflI RGATCY 3 cut(s) 1614, 2261, 2521
MlyI GAGTC 3 cut(s) 1119, 1655, 2048
MmeI TCCRAC 1 cut(s) 701
MseI TTAA 4 cut(s) 849, 1434, 2135, 2594
MslI CAYNNNNRTG 5 cut(s) 593, 1163, 1307, 1332, 1623
MspI CCGG 7 cut(s) 274, 451, 509, 812, 1955, 2199, 2207
MspR9I CCNGG 8 cut(s) 63, 97, 813, 1187, 1756, 1956, 2200, 2391
Mva1269I GAATGC 2 cut(s) 399, 2251
MvaI CCWGG 5 cut(s) 63, 97, 1187, 1756, 2391
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 8 cut(s) 150, 609, 650, 1058, 1391, 1475, 2120, 2378
NciI CCSGG 3 cut(s) 813, 1956, 2200
NcoI CCATGG 1 cut(s) 1618
NdeI CATATG 2 cut(s) 1684, 2188
NlaIV GGNNCC 7 cut(s) 202, 210, 1184, 1858, 1959, 2102, 2148
NmeAIII GCCGAG 1 cut(s) 1742
NmuCI GTSAC 2 cut(s) 85, 820
NspI RCATGY 3 cut(s) 346, 1168, 2088
NspV TTCGAA 1 cut(s) 1633
PaeI GCATGC 1 cut(s) 2088
PagI TCATGA 1 cut(s) 1302
PaqCI CACCTGC 1 cut(s) 2306
PceI AGGCCT 4 cut(s) 542, 569, 1289, 1529
PciI ACATGT 1 cut(s) 1164
PctI GAATGC 2 cut(s) 399, 2251
PfeI GAWTC 6 cut(s) 973, 1316, 2092, 2164, 2433, 2600
PflMI CCANNNNNTGG 1 cut(s) 1414
PfoI TCCNGGA 2 cut(s) 95, 2198
PkrI GCNGC 4 cut(s) 245, 1195, 2017, 2071
PleI GAGTC 3 cut(s) 1119, 1654, 2048
PpsI GAGTC 3 cut(s) 1119, 1654, 2048
Ppu21I YACGTR 1 cut(s) 1344
PpuMI RGGWCCY 2 cut(s) 1183, 2387
PscI ACATGT 1 cut(s) 1164
Psp5II RGGWCCY 2 cut(s) 1183, 2387
Psp6I CCWGG 5 cut(s) 61, 95, 1185, 1754, 2389
PspFI CCCAGC 1 cut(s) 1892
PspGI CCWGG 5 cut(s) 61, 95, 1185, 1754, 2389
PspN4I GGNNCC 7 cut(s) 202, 210, 1184, 1858, 1959, 2102, 2148
PspPI GGNCC 6 cut(s) 201, 271, 1183, 1958, 2387, 2443
PspPPI RGGWCCY 2 cut(s) 1183, 2387
PstI CTGCAG 1 cut(s) 146
PsuI RGATCY 3 cut(s) 1614, 2261, 2521
RsaI GTAC 9 cut(s) 210, 347, 413, 1023, 1140, 1277, 1326, 1367, 1858
RsaNI GTAC 9 cut(s) 209, 346, 412, 1022, 1139, 1276, 1325, 1366, 1857
RseI CAYNNNNRTG 5 cut(s) 593, 1163, 1307, 1332, 1623
SaqAI TTAA 4 cut(s) 849, 1434, 2135, 2594
SatI GCNGC 4 cut(s) 244, 1194, 2016, 2070
Sau96I GGNCC 6 cut(s) 201, 271, 1183, 1958, 2387, 2443
SchI GAGTC 3 cut(s) 1119, 1655, 2048
ScrFI CCNGG 8 cut(s) 63, 97, 813, 1187, 1756, 1956, 2200, 2391
SexAI ACCWGGT 1 cut(s) 2389
SfaNI GCATC 8 cut(s) 361, 775, 990, 1299, 1372, 1457, 1512, 1938
SfcI CTRYAG 2 cut(s) 142, 1882
SfuI TTCGAA 1 cut(s) 1633
SinI GGWCC 5 cut(s) 201, 1183, 1958, 2387, 2443
SmiMI CAYNNNNRTG 5 cut(s) 593, 1163, 1307, 1332, 1623
SphI GCATGC 1 cut(s) 2088
SseBI AGGCCT 4 cut(s) 542, 569, 1289, 1529
SsiI CCGC 7 cut(s) 81, 106, 212, 612, 644, 1438, 1575
SspI AATATT 1 cut(s) 292
SspMI CTAG 5 cut(s) 843, 1047, 1272, 1866, 1926
StuI AGGCCT 4 cut(s) 542, 569, 1289, 1529
StyD4I CCNGG 8 cut(s) 61, 95, 811, 1185, 1754, 1954, 2198, 2389
StyI CCWWGG 3 cut(s) 204, 1618, 2104
TaaI ACNGT 9 cut(s) 554, 905, 1280, 1299, 1734, 1886, 2172, 2299, 2450
TaiI ACGT 4 cut(s) 1233, 1346, 1999, 2309
TaqI TCGA 6 cut(s) 387, 564, 1398, 1633, 1739, 2327
TatI WGTACW 4 cut(s) 411, 1021, 1138, 1324
TfiI GAWTC 6 cut(s) 973, 1316, 2092, 2164, 2433, 2600
Tru1I TTAA 4 cut(s) 849, 1434, 2135, 2594
Tru9I TTAA 4 cut(s) 849, 1434, 2135, 2594
TscAI CASTG 8 cut(s) 245, 869, 1086, 1540, 1939, 2279, 2304, 2455
TseFI GTSAC 2 cut(s) 85, 820
TseI GCWGC 4 cut(s) 243, 1193, 2015, 2069
Tsp45I GTSAC 2 cut(s) 85, 820
TspGWI ACGGA 2 cut(s) 405, 513
TspRI CASTG 8 cut(s) 245, 869, 1086, 1540, 1939, 2279, 2304, 2455
Van91I CCANNNNNTGG 1 cut(s) 1414
VpaK11BI GGWCC 5 cut(s) 201, 1183, 1958, 2387, 2443
XapI RAATTY 6 cut(s) 7, 406, 1098, 1150, 1639, 1666
XceI RCATGY 3 cut(s) 346, 1168, 2088
XmiI GTMKAC 4 cut(s) 123, 926, 1233, 1983
XspI CTAG 5 cut(s) 843, 1047, 1272, 1866, 1926
ZraI GACGTC 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.