MD09G1254100.v1.1

methyltransferase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
32552099 .. 32556687
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1254100.v1.1.491

Sequence Viewer

Length: 564 bp
ATGATTTTAACATGCTCTTCAAATCCCTCCCGCAGAACAGGAACTACTATGCAGTGGGTGTGCCAGGTTCTTTCTACGGTTTGCTTGTTTCCTAATAAGGCTTCCATTCCCTTTTTTCACTCGTCATTAGCGGTTCATTGGCTTTCTAGAGTACCAAAAGATGTAACGAAAAAAAACAGTGGAGCTTGGAATAAAGGACGAATCCACTACTCAAATTCCCAAGACGAAGTAGTCAAGGCTTATCAAGCTCAATATTCTGAGGACATGGAGTGTTTCCTCCATGCCAGGGCGCTAGAGACTCTGCATGGAGGATTGGTAGAGCTTACCCTTTTAGGACGCCACAATGTACGAGATCGCTGTCCTGTTTTTCCAATGACAGCTGCAATGGGGGATTCCACTAATGTTTCTGAGGCATATCCAATGAAAGGTGGAGATGGCCCCGACAGCTATGCCAAGAATTCTATCGAACAGGTTCTGCTAATTGATGAAAAATCTTTTTTTTTTATTTCTTTTTATTCAGCCTTTACTACTTGGAAATTCTTACGAAAATGTTTTCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

8.74

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 29 - 115 3.7e-27 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AciI CCGC 2 cut(s) 31, 131
AcsI RAATTY 3 cut(s) 214, 457, 536
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 2 cut(s) 153, 348
AfiI CCNNNNNNNGG 2 cut(s) 286, 425
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 2 cut(s) 63, 284
AluBI AGCT 5 cut(s) 185, 248, 322, 380, 447
AluI AGCT 5 cut(s) 185, 248, 322, 380, 447
Alw26I GTCTC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 475
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 3 cut(s) 214, 457, 536
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 428
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 2 cut(s) 65, 286
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 147, 293
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 65, 286
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 65, 286
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 425
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 2 cut(s) 65, 286
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 286, 425
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 249, 399
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 286, 425
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 438
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 2 cut(s) 31, 131
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 250, 400
BspLI GGNNCC 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 337
Bst2UI CCWGG 2 cut(s) 65, 286
Bst4CI ACNGT 2 cut(s) 79, 179
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 258, 408
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 245, 444
BstNI CCWGG 2 cut(s) 65, 286
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 63, 284
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 184
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 437
CseI GACGC 1 cut(s) 345
Csp6I GTAC 2 cut(s) 152, 347
CviAII CATG 4 cut(s) 12, 265, 281, 305
CviQI GTAC 2 cut(s) 152, 347
DdeI CTNAG 2 cut(s) 258, 408
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 63, 284
FaeI CATG 4 cut(s) 15, 268, 284, 308
FaiI YATR 7 cut(s) 13, 50, 266, 282, 306, 415, 450
FatI CATG 4 cut(s) 11, 264, 280, 304
FauI CCCGC 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 2 cut(s) 147, 293
GlaI GCGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 1 cut(s) 438
HgaI GACGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 4 cut(s) 15, 268, 284, 308
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 3 cut(s) 201, 298, 392
Hpy188I TCNGA 2 cut(s) 259, 409
Hpy188III TCNNGA 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 79, 179
HpyCH4V TGCA 3 cut(s) 52, 304, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 444
HpyF3I CTNAG 2 cut(s) 258, 408
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 4 cut(s) 15, 268, 284, 308
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 1 cut(s) 352
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 24, 50, 77, 271, 298, 375, 455
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 2 cut(s) 147, 293
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 9, 548
MluCI AATT 4 cut(s) 214, 457, 480, 536
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 5 cut(s) 37, 253, 287, 302, 403
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 65, 286
MvaI CCWGG 2 cut(s) 65, 286
MwoI GCNNNNNNNGC 2 cut(s) 245, 444
NdeII GATC 1 cut(s) 352
NlaIII CATG 4 cut(s) 15, 268, 284, 308
NlaIV GGNNCC 1 cut(s) 439
NspI RCATGY 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 201, 392
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 63, 284
PspGI CCWGG 2 cut(s) 63, 284
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 437
PsrI GAACNNNNNNTAC 2 cut(s) 28, 60
PstNI CAGNNNCTG 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 153, 348
RsaNI GTAC 2 cut(s) 152, 347
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 2 cut(s) 65, 286
SetI ASST 8 cut(s) 69, 187, 250, 324, 382, 430, 449, 474
Sse9I AATT 4 cut(s) 214, 457, 480, 536
SsiI CCGC 2 cut(s) 31, 131
SspI AATATT 1 cut(s) 254
SspMI CTAG 2 cut(s) 147, 293
StyD4I CCNGG 2 cut(s) 63, 284
TaaI ACNGT 2 cut(s) 79, 179
TaqI TCGA 1 cut(s) 465
TasI AATT 4 cut(s) 214, 457, 480, 536
TfiI GAWTC 2 cut(s) 201, 392
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 59, 184
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 4 cut(s) 125, 437, 501, 548
TspRI CASTG 2 cut(s) 59, 184
XapI RAATTY 3 cut(s) 214, 457, 536
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 147, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.