Rmu_sc0003465.1_g000046

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003465.1
OG0000151
Physical Location & Seq
Forward (+)
205969 .. 207951
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003465.1_g000046.1.cds

Sequence Viewer

Length: 1074 bp
atggttgaagcatatccaatgaaaggtggagatggacccagcagctatgccaagaactccagttaccagaaaggagttgcaggtgctgcccaagaagttgtgaacagggctatagcagaaaagcttgacattatcacattatctaattccaacacctttagcattgcagatttaggttgctctgttgggccaaatacgctttctgcagttgggaacataattgaagctgtgcagctcaagtatcaaagtcaagtgcggctgcttgattcccaaatccctgaatttcaagttttctttaatgatcataccccaaatgactttaacatgctcttccagtccctccctcccaacagacaatactatgcaatgggtgtgcccggttctttctatggtcgtctatttcctaaagcttcggttcactttgttcactcttcttacgccattcattggctttcaagggtaccgaagcaggtacttgataaaaatagccccgcttggaacaaaggacgaatccattacctaaattccacagatgcagtagtgagggcatttgaagctcaatatgctgaggacatggcgtgcttcctgcatgccagggcacaagagattgtctgtggaggattgatggtacttatcattccaggtcacattcaagatacacatcattcccaatctttcagaaatatgacctatcaactactagggtcttgcctcatggacttggctaggaagggagtagttagcgaggagaaggtagattcgtttaatatacctatttactatatgtctccccaagaactggaagcttctgtagaaagaaatggctgttttagcatagagggtatggaaaacttacgtaagatctcaaaacttggcagtgtcaccgaaagtgcccaactaattgcatctcacggaagagctgtcatggagggactgttcaggcagcaatttggagatgaaattttagatgagctctttgacttgtaccgcaagaaacttgaagagaatccctccatctttgagtcaatggatgcaactctctttcttgccgtgcttaaacgcaacgcaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

357

Amino Acids

39.86

Weight (kDa)

5.95

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
Acc36I ACCTGC 2 cut(s) 71, 460
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 460
AccB7I CCANNNNNTGG 2 cut(s) 447, 799
AciI CCGC 3 cut(s) 256, 492, 988
AcsI RAATTY 3 cut(s) 281, 523, 960
AfaI GTAC 4 cut(s) 462, 474, 630, 986
AfiI CCNNNNNNNGG 3 cut(s) 23, 447, 799
AgsI TTSAA 7 cut(s) 8, 224, 287, 456, 554, 653, 1001
AjnI CCWGG 2 cut(s) 593, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AloI GAACNNNNNNTCC 2 cut(s) 920, 952
AluBI AGCT 9 cut(s) 45, 124, 227, 235, 410, 557, 806, 920, 973
AluI AGCT 9 cut(s) 45, 124, 227, 235, 410, 557, 806, 920, 973
Alw21I GWGCWC 1 cut(s) 975
Alw26I GTCTC 1 cut(s) 792
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 5 cut(s) 42, 86, 232, 259, 943
ApoI RAATTY 3 cut(s) 281, 523, 960
Asp718I GGTACC 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 35, 188
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 874
AvaII GGWCC 1 cut(s) 35
BaeGI GKGCMC 3 cut(s) 378, 601, 895
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 5 cut(s) 54, 73, 244, 246, 955
BccI CCATC 3 cut(s) 26, 619, 1022
BceAI ACGGC 1 cut(s) 1034
BciT130I CCWGG 2 cut(s) 595, 642
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 2 cut(s) 701, 726
BfmI CTRYAG 3 cut(s) 111, 204, 810
BfuAI ACCTGC 2 cut(s) 71, 460
BglII AGATCT 1 cut(s) 861
BisI GCNGC 6 cut(s) 43, 87, 233, 257, 260, 944
BlsI GCNGC 6 cut(s) 44, 88, 234, 258, 261, 945
Bme1390I CCNGG 3 cut(s) 378, 595, 642
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 188
BmiI GGNNCC 2 cut(s) 37, 462
BmrFI CCNGG 3 cut(s) 378, 595, 642
BmsI GCATC 3 cut(s) 523, 914, 1021
BplI GAGNNNNNCTC 2 cut(s) 995, 1027
BpmI CTGGAG 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 857
BsaBI GATNNNNATC 1 cut(s) 660
BsaJI CCNNGG 1 cut(s) 594
BsaXI ACNNNNNCTCC 2 cut(s) 920, 950
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 447, 799
Bse1I ACTGG 3 cut(s) 60, 334, 804
Bse3DI GCAATG 2 cut(s) 162, 372
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 2 cut(s) 595, 642
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 1 cut(s) 1036
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 3 cut(s) 23, 447, 799
BseMI GCAATG 2 cut(s) 162, 372
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 3 cut(s) 60, 334, 804
BseRI GAGGAG 1 cut(s) 761
BseSI GKGCMC 3 cut(s) 378, 601, 895
BseXI GCAGC 5 cut(s) 54, 73, 244, 246, 955
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 975
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 322, 945
BslI CCNNNNNNNGG 3 cut(s) 23, 447, 799
BsmAI GTCTC 1 cut(s) 792
BsmFI GGGAC 2 cut(s) 322, 945
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 4 cut(s) 378, 601, 895, 975
Bsp143I GATC 2 cut(s) 301, 861
BspACI CCGC 3 cut(s) 256, 492, 988
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 37, 462
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 2 cut(s) 71, 460
BspQI GCTCTTC 2 cut(s) 335, 910
BspT107I GGYRCC 1 cut(s) 460
BsrDI GCAATG 2 cut(s) 162, 372
BsrI ACTGG 3 cut(s) 60, 334, 804
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 2 cut(s) 301, 861
Bst2UI CCWGG 2 cut(s) 595, 642
Bst4CI ACNGT 1 cut(s) 936
Bst6I CTCTTC 4 cut(s) 335, 436, 910, 996
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 580, 591
BstDEI CTNAG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 1036
BstKTI GATC 2 cut(s) 304, 864
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 2 cut(s) 301, 861
BstMWI GCNNNNNNNGC 5 cut(s) 86, 196, 554, 563, 831
BstNI CCWGG 2 cut(s) 595, 642
BstNSI RCATGY 2 cut(s) 328, 593
BstSCI CCNGG 3 cut(s) 376, 593, 640
BstSFI CTRYAG 3 cut(s) 111, 204, 810
BstSLI GKGCMC 3 cut(s) 378, 601, 895
BstSNI TACGTA 1 cut(s) 857
BstV1I GCAGC 5 cut(s) 54, 73, 244, 246, 955
BstX2I RGATCY 1 cut(s) 861
BstYI RGATCY 1 cut(s) 861
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 1036
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 1 cut(s) 883
BveI ACCTGC 2 cut(s) 71, 460
Cac8I GCNNGC 2 cut(s) 580, 591
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 35, 188
Csp6I GTAC 4 cut(s) 461, 473, 629, 985
CviAII CATG 5 cut(s) 325, 574, 590, 715, 925
CviQI GTAC 4 cut(s) 461, 473, 629, 985
DdeI CTNAG 1 cut(s) 567
DpnI GATC 2 cut(s) 303, 863
DpnII GATC 2 cut(s) 301, 861
Eam1104I CTCTTC 4 cut(s) 335, 436, 910, 996
EarI CTCTTC 4 cut(s) 335, 436, 910, 996
Ecl136II GAGCTC 1 cut(s) 973
Eco105I TACGTA 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 975
Eco47I GGWCC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 973
EcoICRI GAGCTC 1 cut(s) 973
EcoRII CCWGG 2 cut(s) 593, 640
EcoT38I GRGCYC 1 cut(s) 975
FaeI CATG 5 cut(s) 328, 577, 593, 718, 928
FaqI GGGAC 2 cut(s) 322, 945
FatI CATG 5 cut(s) 324, 573, 589, 714, 924
FauI CCCGC 1 cut(s) 499
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 6 cut(s) 43, 87, 233, 257, 260, 944
FokI GGATG 1 cut(s) 1043
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 6 cut(s) 43, 87, 233, 257, 260, 944
FspBI CTAG 2 cut(s) 701, 726
GluI GCNGC 6 cut(s) 43, 87, 233, 257, 260, 944
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 378
Hin1II CATG 5 cut(s) 328, 577, 593, 718, 928
HindIII AAGCTT 3 cut(s) 122, 408, 804
HinfI GANTC 5 cut(s) 266, 510, 758, 1006, 1022
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 3 cut(s) 103, 418, 427
Hpy188I TCNGA 1 cut(s) 680
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 3 cut(s) 103, 418, 427
HpyAV CCTTC 2 cut(s) 724, 745
HpyCH4III ACNGT 1 cut(s) 936
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 9 cut(s) 80, 167, 206, 232, 365, 536, 589, 905, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 196, 554, 563, 831
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 5 cut(s) 328, 577, 593, 718, 928
KpnI GGTACC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 301, 861
LguI GCTCTTC 2 cut(s) 335, 910
Lsp1109I GCAGC 5 cut(s) 54, 73, 244, 246, 955
LweI GCATC 3 cut(s) 523, 914, 1021
MaeI CTAG 2 cut(s) 701, 726
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 3 cut(s) 62, 644, 880
MalI GATC 2 cut(s) 303, 863
MboI GATC 2 cut(s) 301, 861
MboII GAAGA 4 cut(s) 322, 423, 927, 1013
MflI RGATCY 1 cut(s) 861
MhlI GDGCHC 4 cut(s) 378, 601, 895, 975
MluCI AATT 8 cut(s) 145, 219, 281, 523, 900, 947, 960, 1069
MlyI GAGTC 1 cut(s) 1031
MmeI TCCRAC 1 cut(s) 174
MseI TTAA 4 cut(s) 297, 321, 765, 1056
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 3 cut(s) 378, 595, 642
MvaI CCWGG 2 cut(s) 595, 642
MwoI GCNNNNNNNGC 5 cut(s) 86, 196, 554, 563, 831
NciI CCSGG 1 cut(s) 378
NdeII GATC 2 cut(s) 301, 861
NlaIII CATG 5 cut(s) 328, 577, 593, 718, 928
NlaIV GGNNCC 2 cut(s) 37, 462
NmuCI GTSAC 2 cut(s) 644, 880
NspI RCATGY 2 cut(s) 328, 593
PaeI GCATGC 1 cut(s) 593
PaqCI CACCTGC 1 cut(s) 71
PciSI GCTCTTC 2 cut(s) 335, 910
PfeI GAWTC 4 cut(s) 266, 510, 758, 1006
PflMI CCANNNNNTGG 2 cut(s) 447, 799
PkrI GCNGC 6 cut(s) 44, 88, 234, 258, 261, 945
PleI GAGTC 1 cut(s) 1030
PpsI GAGTC 1 cut(s) 1030
Ppu21I YACGTR 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 975
Psp6I CCWGG 2 cut(s) 593, 640
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 2 cut(s) 593, 640
PspN4I GGNNCC 2 cut(s) 37, 462
PspPI GGNCC 2 cut(s) 35, 188
PsrI GAACNNNNNNTAC 2 cut(s) 47, 79
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 861
RsaI GTAC 4 cut(s) 462, 474, 630, 986
RsaNI GTAC 4 cut(s) 461, 473, 629, 985
SacI GAGCTC 1 cut(s) 975
SapI GCTCTTC 2 cut(s) 335, 910
SaqAI TTAA 4 cut(s) 297, 321, 765, 1056
SatI GCNGC 6 cut(s) 43, 87, 233, 257, 260, 944
Sau3AI GATC 2 cut(s) 301, 861
Sau96I GGNCC 2 cut(s) 35, 188
SchI GAGTC 1 cut(s) 1031
ScrFI CCNGG 3 cut(s) 378, 595, 642
SduI GDGCHC 4 cut(s) 378, 601, 895, 975
SfaNI GCATC 3 cut(s) 523, 914, 1021
SfcI CTRYAG 3 cut(s) 111, 204, 810
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SnaBI TACGTA 1 cut(s) 857
SphI GCATGC 1 cut(s) 593
Sse9I AATT 8 cut(s) 145, 219, 281, 523, 900, 947, 960, 1069
SsiI CCGC 3 cut(s) 256, 492, 988
SspMI CTAG 2 cut(s) 701, 726
SstI GAGCTC 1 cut(s) 975
StyD4I CCNGG 3 cut(s) 376, 593, 640
TaaI ACNGT 1 cut(s) 936
TaiI ACGT 1 cut(s) 859
TasI AATT 8 cut(s) 145, 219, 281, 523, 900, 947, 960, 1069
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 4 cut(s) 266, 510, 758, 1006
Tru1I TTAA 4 cut(s) 297, 321, 765, 1056
Tru9I TTAA 4 cut(s) 297, 321, 765, 1056
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 2 cut(s) 644, 880
TseI GCWGC 5 cut(s) 42, 86, 232, 259, 943
Tsp45I GTSAC 2 cut(s) 644, 880
TspDTI ATGAA 3 cut(s) 35, 434, 972
TspGWI ACGGA 1 cut(s) 927
TspRI CASTG 1 cut(s) 883
Van91I CCANNNNNTGG 2 cut(s) 447, 799
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 3 cut(s) 281, 523, 960
XceI RCATGY 2 cut(s) 328, 593
XspI CTAG 2 cut(s) 701, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.