Rroxscaffold_2G00115440

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000151
Physical Location & Seq
Reverse (-)
41677402 .. 41679414
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115440.1

Sequence Viewer

Length: 843 bp
ATGGCCATGAAGGAACTCAGCAAAATGGTTGAAGCATATCCAATGAAAGGTGGAGATGGACCCAACAGCTATGCCAAGAACTCCAGTTACCAGAAAGGAGTTGCAGGTGCTGCCCAAGAAGTTGTGAACAGGGCTATAGAAGAAAAGCTTGACATAGACAATATCACATTATCTAATTCCAACACCTTTAGCATTGCAGATTTAGGTTGCTCTGTTGGGCCAAATACGTTTTCTGCAGTTGGGAACATAATTGAAGCTGTGCAGCTCAAGTATCAAAGCCAAGTACGGCTGCTTGATTCCCAAATCCCTCAATTTCAAGTTTTCTTTAATGATCATACCCCAAATGACTTTAACATGCTCTTCAAGTCCCTCCCTCCTAACAGACAATACTATGCAATGGGTGTGCCTGGTTCTTTCTATGGTCGTCTATTTCCTAAAGCTTCGGTTCACTTTGTTCACTCTTCTTACGCCATTCATTGGCTTTCAAGGGTACCCAAGCAGGGAGTAGTTAGTGAGGAGAAGGTAGATTCGTTTAATATACCTATTTACTATATGTCTCCCCAAGAACTGGAAGCTTCTGTAGAAAGAAATGGCTGTTTTAGCATAGAGGGTATGGAAAACTTACGTAAGATCTCAAAACTTGGCAATGTCACCGAAAGTGCCCAACTAATTGCATCTCACGGAAGAGCTGTCATGGAGGGACTGTTCAGGCAGCAATTTGGAGATGAAATTTTAGATGAGCTCTTTGACTTGTACCGCAAGAAACTTGAAGAGAATCCCTCCATCTTTGAGTCAATGGATGCAACTCTCTTTCTTGCCGTGCTTAAACGCAACGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

280

Amino Acids

31.35

Weight (kDa)

5.62

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 56 - 167 5.8e-47 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 166 - 277 1.8e-23 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 490
AccB7I CCANNNNNTGG 2 cut(s) 477, 568
AciI CCGC 1 cut(s) 757
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 729
AfaI GTAC 3 cut(s) 285, 492, 755
AfiI CCNNNNNNNGG 4 cut(s) 47, 477, 500, 568
AgsI TTSAA 6 cut(s) 32, 254, 317, 364, 486, 770
AjnI CCWGG 1 cut(s) 406
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AloI GAACNNNNNNTCC 2 cut(s) 689, 721
AluBI AGCT 8 cut(s) 69, 148, 257, 265, 440, 575, 689, 742
AluI AGCT 8 cut(s) 69, 148, 257, 265, 440, 575, 689, 742
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 1 cut(s) 561
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 3, 218
ApeKI GCWGC 4 cut(s) 110, 262, 289, 712
ApoI RAATTY 1 cut(s) 729
Asp718I GGTACC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 59, 218
AsuHPI GGTGA 1 cut(s) 643
AvaII GGWCC 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 664
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 4 cut(s) 97, 274, 276, 724
BccI CCATC 2 cut(s) 50, 791
BceAI ACGGC 2 cut(s) 302, 803
BciT130I CCWGG 1 cut(s) 408
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 561
BfmI CTRYAG 3 cut(s) 135, 234, 579
BfuAI ACCTGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 630
BisI GCNGC 4 cut(s) 111, 263, 290, 713
BlsI GCNGC 4 cut(s) 112, 264, 291, 714
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 218
BmiI GGNNCC 2 cut(s) 61, 492
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 2 cut(s) 683, 790
BplI GAGNNNNNCTC 2 cut(s) 764, 796
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 477, 500, 568
Bse1I ACTGG 2 cut(s) 84, 573
Bse3DI GCAATG 3 cut(s) 192, 402, 652
BseBI CCWGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 4 cut(s) 47, 477, 500, 568
BseMI GCAATG 3 cut(s) 192, 402, 652
BseMII CTCAG 1 cut(s) 31
BseNI ACTGG 2 cut(s) 84, 573
BseRI GAGGAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 4 cut(s) 97, 274, 276, 724
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 2 cut(s) 5, 220
BshNI GGYRCC 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 744
BslFI GGGAC 2 cut(s) 352, 714
BslI CCNNNNNNNGG 4 cut(s) 47, 477, 500, 568
BsmAI GTCTC 1 cut(s) 561
BsmFI GGGAC 2 cut(s) 352, 714
BsnI GGCC 2 cut(s) 5, 220
Bsp1286I GDGCHC 2 cut(s) 664, 744
Bsp143I GATC 2 cut(s) 331, 630
BspACI CCGC 1 cut(s) 757
BspANI GGCC 2 cut(s) 5, 220
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 61, 492
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 95
BspQI GCTCTTC 2 cut(s) 365, 679
BspT107I GGYRCC 1 cut(s) 490
BsrDI GCAATG 3 cut(s) 192, 402, 652
BsrI ACTGG 2 cut(s) 84, 573
BssMI GATC 2 cut(s) 331, 630
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 705
Bst6I CTCTTC 4 cut(s) 365, 466, 679, 765
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 626
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 805
BstKTI GATC 2 cut(s) 334, 633
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 2 cut(s) 331, 630
BstMWI GCNNNNNNNGC 2 cut(s) 110, 600
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 3 cut(s) 135, 234, 579
BstSLI GKGCMC 1 cut(s) 664
BstSNI TACGTA 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 97, 274, 276, 724
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 2 cut(s) 5, 220
BtsCI GGATG 1 cut(s) 805
BveI ACCTGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 59, 218
Csp6I GTAC 3 cut(s) 284, 491, 754
CviAII CATG 3 cut(s) 7, 355, 694
CviQI GTAC 3 cut(s) 284, 491, 754
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 333, 632
DpnII GATC 2 cut(s) 331, 630
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 365, 466, 679, 765
EarI CTCTTC 4 cut(s) 365, 466, 679, 765
Ecl136II GAGCTC 1 cut(s) 742
Eco105I TACGTA 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 744
FaeI CATG 3 cut(s) 10, 358, 697
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 2 cut(s) 352, 714
FatI CATG 3 cut(s) 6, 354, 693
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 4 cut(s) 111, 263, 290, 713
FokI GGATG 1 cut(s) 812
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 4 cut(s) 111, 263, 290, 713
GluI GCNGC 4 cut(s) 111, 263, 290, 713
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 2 cut(s) 5, 220
Hin1II CATG 3 cut(s) 10, 358, 697
HindIII AAGCTT 3 cut(s) 146, 438, 573
HinfI GANTC 4 cut(s) 296, 527, 775, 791
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 3 cut(s) 127, 448, 457
Hpy8I GTNNAC 3 cut(s) 127, 448, 457
HpyAV CCTTC 2 cut(s) 4, 514
HpyCH4III ACNGT 1 cut(s) 705
HpyCH4IV ACGT 2 cut(s) 227, 625
HpyCH4V TGCA 7 cut(s) 104, 197, 236, 262, 395, 674, 803
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 600
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 2 cut(s) 227, 625
Hsp92II CATG 3 cut(s) 10, 358, 697
KpnI GGTACC 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 331, 630
LguI GCTCTTC 2 cut(s) 365, 679
LpnPI CCDG 9 cut(s) 90, 97, 104, 115, 393, 420, 485, 554, 694
Lsp1109I GCAGC 4 cut(s) 97, 274, 276, 724
LweI GCATC 2 cut(s) 683, 790
MaeII ACGT 2 cut(s) 227, 625
MaeIII GTNAC 2 cut(s) 86, 649
MalI GATC 2 cut(s) 333, 632
MboI GATC 2 cut(s) 331, 630
MboII GAAGA 5 cut(s) 152, 352, 453, 696, 782
MflI RGATCY 1 cut(s) 630
MhlI GDGCHC 2 cut(s) 664, 744
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 175, 249, 311, 669, 716, 729, 838
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 7 cut(s) 318, 380, 384, 508, 601, 691, 790
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 327, 351, 534, 825
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 110, 600
NdeII GATC 2 cut(s) 331, 630
NlaIII CATG 3 cut(s) 10, 358, 697
NlaIV GGNNCC 2 cut(s) 61, 492
NmuCI GTSAC 1 cut(s) 649
NspI RCATGY 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 95
PciSI GCTCTTC 2 cut(s) 365, 679
PfeI GAWTC 3 cut(s) 296, 527, 775
PflMI CCANNNNNTGG 2 cut(s) 477, 568
PkrI GCNGC 4 cut(s) 112, 264, 291, 714
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Ppu21I YACGTR 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 61, 492
PspPI GGNCC 2 cut(s) 59, 218
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 630
RsaI GTAC 3 cut(s) 285, 492, 755
RsaNI GTAC 3 cut(s) 284, 491, 754
SacI GAGCTC 1 cut(s) 744
SapI GCTCTTC 2 cut(s) 365, 679
SaqAI TTAA 4 cut(s) 327, 351, 534, 825
SatI GCNGC 4 cut(s) 111, 263, 290, 713
Sau3AI GATC 2 cut(s) 331, 630
Sau96I GGNCC 2 cut(s) 59, 218
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 2 cut(s) 664, 744
SfaNI GCATC 2 cut(s) 683, 790
SfcI CTRYAG 3 cut(s) 135, 234, 579
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SnaBI TACGTA 1 cut(s) 626
Sse9I AATT 7 cut(s) 175, 249, 311, 669, 716, 729, 838
SsiI CCGC 1 cut(s) 757
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 705
TaiI ACGT 2 cut(s) 230, 628
TasI AATT 7 cut(s) 175, 249, 311, 669, 716, 729, 838
TfiI GAWTC 3 cut(s) 296, 527, 775
Tru1I TTAA 4 cut(s) 327, 351, 534, 825
Tru9I TTAA 4 cut(s) 327, 351, 534, 825
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 110, 262, 289, 712
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 4 cut(s) 23, 59, 464, 741
TspGWI ACGGA 1 cut(s) 696
Van91I CCANNNNNTGG 2 cut(s) 477, 568
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 729
XceI RCATGY 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.