RchiOBHm_Chr4g0400921

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000151
Physical Location & Seq
Reverse (-)
18888072 .. 18889302
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37291

Sequence Viewer

Length: 627 bp
ATGGACCAGGACAAGAGTCCATTATGCAAGAATTGTACCAGCAAACCCGATTGGAATAAAGGCCGGATTCATTACCTGGGTTCGACTGATGAAGTAGTAAGGGCATATAAAGCTCAATATTCTGAGAATATGAATTCTTTCCTGCATGCTAGGGCAGAAGAACTTGTGTATGGAGGACTACTGGTCCTTATCATTCCTGGCTACCCACAGGGTACCCCTCTTTCTCCTACTGTGGCGTATTTGACCTTACAAGTCATAGAAGCCTGTCTCATCGACATGGTCGGAAAGGGAGTAATTAGTGAAGAGAAACTAGATTCATTCAACATACCAATGTATTCCATCTGCCCCCAAGAACTCGAAGCAGTTGTCGAACAAAATGGATCTTTTAGCATAGAGACATTGGAAACAATACCTCATGTTTTAGCTGATGATGCTGTCTTAAATGCAAAACAACTTGCAGCTCATGGAAGAGCCGTCTTGGAGGGACTCATCAAACAGCAATTTGGAAAAGAAATCACAGATGAGCTCTTCGACTTGTATGGCAAGAAAATGGAGAAAGAACTCTCCATTTTTAAGCAAAGGAAGAGAACTAACTTTCTTGTCGTCCTTAAGCGCAAGGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

208

Amino Acids

23.34

Weight (kDa)

6.12

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 13 - 205 3e-51 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 2 cut(s) 37, 214
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 1 cut(s) 322
AhdI GACNNNNNGTC 1 cut(s) 182
AjnI CCWGG 3 cut(s) 6, 75, 196
AluBI AGCT 4 cut(s) 113, 425, 461, 526
AluI AGCT 4 cut(s) 113, 425, 461, 526
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 272, 389
AlwI GGATC 1 cut(s) 388
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp700I GAANNNNTTC 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 2 cut(s) 4, 184
AvaII GGWCC 2 cut(s) 4, 184
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 470
BccI CCATC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 3 cut(s) 8, 77, 198
BcoDI GTCTC 2 cut(s) 272, 389
BfaI CTAG 2 cut(s) 150, 311
BfrI CTTAAG 1 cut(s) 608
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 8, 77, 198
Bme18I GGWCC 2 cut(s) 4, 184
BmeRI GACNNNNNGTC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 4, 184
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 8, 77, 198
BmsI GCATC 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 3 cut(s) 8, 77, 198
BseDI CCNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 470
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 498
BsmAI GTCTC 2 cut(s) 272, 389
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 1 cut(s) 380
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 388
BspQI GCTCTTC 2 cut(s) 463, 533
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 608
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 380
Bst2UI CCWGG 3 cut(s) 8, 77, 198
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 4 cut(s) 297, 463, 533, 578
BstAFI CTTAAG 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 2 cut(s) 272, 389
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 2 cut(s) 110, 431
BstNI CCWGG 3 cut(s) 8, 77, 198
BstNSI RCATGY 1 cut(s) 149
BstPAI GACNNNNGTC 1 cut(s) 15
BstSCI CCNGG 3 cut(s) 6, 75, 196
BstV1I GCAGC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 615
Cfr13I GGNCC 2 cut(s) 4, 184
Csp6I GTAC 2 cut(s) 36, 213
CviAII CATG 4 cut(s) 146, 277, 416, 464
CviJI RGCY 8 cut(s) 63, 113, 201, 263, 425, 461, 473, 526
CviKI_1 RGCY 8 cut(s) 63, 113, 201, 263, 425, 461, 473, 526
CviQI GTAC 2 cut(s) 36, 213
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 4 cut(s) 297, 463, 533, 578
Eam1105I GACNNNNNGTC 1 cut(s) 182
EarI CTCTTC 4 cut(s) 297, 463, 533, 578
Ecl136II GAGCTC 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 4, 184
Eco53kI GAGCTC 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 3 cut(s) 6, 75, 196
EcoT38I GRGCYC 1 cut(s) 528
FaeI CATG 4 cut(s) 149, 280, 419, 467
FaqI GGGAC 1 cut(s) 498
FatI CATG 4 cut(s) 145, 276, 415, 463
Fnu4HI GCNGC 1 cut(s) 459
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 2 cut(s) 150, 311
GlaI GCGC 1 cut(s) 614
GluI GCNGC 1 cut(s) 459
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 64
HhaI GCGC 1 cut(s) 615
Hin1II CATG 4 cut(s) 149, 280, 419, 467
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HinfI GANTC 4 cut(s) 16, 67, 314, 486
HpaII CCGG 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 124, 284
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 27, 145, 446, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 431
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 4 cut(s) 149, 280, 419, 467
HspAI GCGC 1 cut(s) 613
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 380
LguI GCTCTTC 2 cut(s) 463, 533
Lsp1109I GCAGC 1 cut(s) 470
LweI GCATC 1 cut(s) 421
MaeI CTAG 2 cut(s) 150, 311
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 5 cut(s) 170, 314, 480, 520, 595
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 4 cut(s) 31, 133, 294, 500
MlyI GAGTC 2 cut(s) 25, 480
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 4 cut(s) 167, 228, 423, 475
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 3 cut(s) 440, 573, 609
MslI CAYNNNNRTG 2 cut(s) 275, 329
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 3 cut(s) 8, 77, 198
MvaI CCWGG 3 cut(s) 8, 77, 198
MwoI GCNNNNNNNGC 2 cut(s) 110, 431
NdeII GATC 1 cut(s) 380
NlaIII CATG 4 cut(s) 149, 280, 419, 467
NlaIV GGNNCC 1 cut(s) 214
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
PciSI GCTCTTC 2 cut(s) 463, 533
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 67, 314
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 2 cut(s) 24, 480
PpsI GAGTC 2 cut(s) 24, 480
PshAI GACNNNNGTC 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 3 cut(s) 6, 75, 196
PspGI CCWGG 3 cut(s) 6, 75, 196
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 4, 184
PsuI RGATCY 1 cut(s) 380
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 2 cut(s) 37, 214
RsaNI GTAC 2 cut(s) 36, 213
RseI CAYNNNNRTG 2 cut(s) 275, 329
SacI GAGCTC 1 cut(s) 528
SapI GCTCTTC 2 cut(s) 463, 533
SaqAI TTAA 3 cut(s) 440, 573, 609
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 1 cut(s) 380
Sau96I GGNCC 2 cut(s) 4, 184
SchI GAGTC 2 cut(s) 25, 480
ScrFI CCNGG 3 cut(s) 8, 77, 198
SduI GDGCHC 1 cut(s) 528
SetI ASST 7 cut(s) 78, 115, 248, 415, 427, 463, 528
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 2 cut(s) 4, 184
SmiMI CAYNNNNRTG 2 cut(s) 275, 329
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SphI GCATGC 1 cut(s) 149
Sse9I AATT 4 cut(s) 31, 133, 294, 500
SspI AATATT 1 cut(s) 119
SspMI CTAG 2 cut(s) 150, 311
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 3 cut(s) 6, 75, 196
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 5 cut(s) 83, 273, 357, 369, 531
TasI AATT 4 cut(s) 31, 133, 294, 500
TfiI GAWTC 2 cut(s) 67, 314
Tru1I TTAA 3 cut(s) 440, 573, 609
Tru9I TTAA 3 cut(s) 440, 573, 609
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 4 cut(s) 59, 105, 146, 306
Tth111I GACNNNGTC 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 608
VpaK11BI GGWCC 2 cut(s) 4, 184
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 2 cut(s) 150, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.