Rh7CG020700

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000151
Physical Location & Seq
Forward (+)
1547040 .. 1548595
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG020700.1

Sequence Viewer

Length: 1032 bp
ATGGAAGGTGGAGATGGCCCCAACAGCTATGCCAAGAACTCCATTGTGCAGAGAGGAGTTGTGGATGCTGCCAAAGAACTTGTAAAAAGGGCAATTGTAGAAACACTCGACATAGACATCTTGTCATCTTCAAACTCCTTTAAAATTGCAGATCTGGGTTGCTCTGTTGGGCCTAATACATTTTATGCAGTTGAAAACATGATTGAAGCTGTGGAGTTCAAGTATCAAAGCCAGGGGCAGAATTCACAAATCCCAGAATTTCAAGTCTTGTTTAATGACCATGCCTCAAATGACTTTAATATGCTCTTCATATCCTTCCCTGAGAACAAACGTTACTATGCAGCCGGTGTGCCTGGTTCTTTCTATAGTAGAGTATTTCCTAATGCTTCCATCCACTTAGTTCACTCTTCCTATGCCATTCATTGGCTTTCTAGAGTACCGAAAGAGGTGTTGGACAAACACAGTCCTGCTTGGAATAAAGGAAAAATTCATTACTTAAATGCCAGAGATGAAGTAGTAAGGGCTTATGAAGCTCAATATGTCGAGGACATGGAGTGCTTCCTGCATGCTAGAGCACAAGAGATTGTGTATGGAGGACTAATGGTACTTATCTTTCCAGGCCGCCCCAATGGCTCCGCTAGTTCTCAAGCTTGGGCAAATATGAGCTTCCAAGTTTTGGGATCTTGCCTCATGGACTTGGTTAGAAAGAGAGTTATTAGCGAAGAGAAAGTAGATTCATTCAACATGCCTATATATTCCATGACTCCTCAAGAACTTGAAGATGCTGTGAAACAGAATGGATGCTTTAGCGTAGAGATAATGGCAAACTTACCTCATCCCTTGGTAGATGACACTCTTTCAGTACCGCAACTACTTGCCTCTCACCTGAGAACTGGCGTGGAGGGGATGGTCAAGAAGCAATTTGGAGAAGAAATATTAGATGAGCTCTTCAACTTGTATCGGGAAAAATGTGAGCATGATGCGCTCAACTTTCTTGCTGTGCTTGGACACAACTTTATTGTTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

343

Amino Acids

38.5

Weight (kDa)

5.31

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 36 - 329 3.1e-103 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 423, 676
AciI CCGC 3 cut(s) 622, 636, 866
AclI AACGTT 1 cut(s) 331
AclWI GGATC 1 cut(s) 688
AcsI RAATTY 3 cut(s) 241, 257, 486
AfaI GTAC 3 cut(s) 438, 606, 864
AfiI CCNNNNNNNGG 2 cut(s) 423, 676
AgsI TTSAA 8 cut(s) 132, 194, 206, 220, 263, 742, 779, 952
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 3 cut(s) 231, 352, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 6 cut(s) 27, 209, 533, 650, 666, 946
AluI AGCT 6 cut(s) 27, 209, 533, 650, 666, 946
Alw21I GWGCWC 2 cut(s) 577, 948
AlwI GGATC 1 cut(s) 688
AoxI GGCC 3 cut(s) 16, 170, 619
ApeKI GCWGC 2 cut(s) 68, 341
ApoI RAATTY 3 cut(s) 241, 257, 486
AspLEI GCGC 1 cut(s) 985
AspS9I GGNCC 2 cut(s) 17, 170
AsuHPI GGTGA 1 cut(s) 875
BanII GRGCYC 1 cut(s) 948
Bbv12I GWGCWC 2 cut(s) 577, 948
BbvI GCAGC 2 cut(s) 55, 353
BccI CCATC 3 cut(s) 8, 398, 901
BciT130I CCWGG 3 cut(s) 233, 354, 618
BfaI CTAG 3 cut(s) 432, 570, 639
BfmI CTRYAG 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 630
BglII AGATCT 1 cut(s) 151
BisI GCNGC 3 cut(s) 69, 342, 622
BlsI GCNGC 3 cut(s) 70, 343, 623
Bme1390I CCNGG 3 cut(s) 233, 354, 618
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 17, 170
BmiI GGNNCC 2 cut(s) 19, 634
BmrFI CCNGG 3 cut(s) 233, 354, 618
BmsI GCATC 4 cut(s) 55, 772, 791, 970
BpuEI CTTGAG 2 cut(s) 630, 753
BsaJI CCNNGG 2 cut(s) 232, 840
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 423, 676
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 898
BseBI CCWGG 3 cut(s) 233, 354, 618
BseDI CCNNGG 2 cut(s) 232, 840
BseGI GGATG 5 cut(s) 70, 390, 806, 835, 912
BseLI CCNNNNNNNGG 2 cut(s) 423, 676
BseMII CTCAG 2 cut(s) 312, 878
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 2 cut(s) 69, 756
BseXI GCAGC 2 cut(s) 55, 353
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 3 cut(s) 18, 172, 621
BsiHKAI GWGCWC 2 cut(s) 577, 948
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 423, 676
BsnI GGCC 3 cut(s) 18, 172, 621
Bsp1286I GDGCHC 2 cut(s) 577, 948
Bsp143I GATC 2 cut(s) 151, 680
BspACI CCGC 3 cut(s) 622, 636, 866
BspANI GGCC 3 cut(s) 18, 172, 621
BspCNI CTCAG 2 cut(s) 313, 879
BspLI GGNNCC 2 cut(s) 19, 634
BspPI GGATC 1 cut(s) 688
BspQI GCTCTTC 2 cut(s) 311, 953
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 1 cut(s) 898
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 232, 840
BssMI GATC 2 cut(s) 151, 680
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 3 cut(s) 233, 354, 618
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 4 cut(s) 311, 412, 717, 953
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 3 cut(s) 321, 397, 887
BstF5I GGATG 5 cut(s) 70, 390, 806, 835, 912
BstHHI GCGC 1 cut(s) 985
BstKTI GATC 2 cut(s) 154, 683
BstMBI GATC 2 cut(s) 151, 680
BstMWI GCNNNNNNNGC 4 cut(s) 24, 530, 630, 982
BstNI CCWGG 3 cut(s) 233, 354, 618
BstNSI RCATGY 2 cut(s) 569, 748
BstSCI CCNGG 3 cut(s) 231, 352, 616
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 55, 353
BstX2I RGATCY 2 cut(s) 151, 680
BstYI RGATCY 2 cut(s) 151, 680
BsuRI GGCC 3 cut(s) 18, 172, 621
BtsCI GGATG 5 cut(s) 70, 390, 806, 835, 912
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 1 cut(s) 985
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 17, 170
Csp6I GTAC 3 cut(s) 437, 605, 863
CviAII CATG 8 cut(s) 199, 281, 550, 566, 691, 745, 760, 977
CviQI GTAC 3 cut(s) 437, 605, 863
DdeI CTNAG 3 cut(s) 321, 397, 887
DpnI GATC 2 cut(s) 153, 682
DpnII GATC 2 cut(s) 151, 680
DraI TTTAAA 1 cut(s) 142
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 4 cut(s) 311, 412, 717, 953
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 4 cut(s) 311, 412, 717, 953
Ecl136II GAGCTC 1 cut(s) 946
Eco130I CCWWGG 1 cut(s) 840
Eco24I GRGCYC 1 cut(s) 948
Eco53kI GAGCTC 1 cut(s) 946
EcoICRI GAGCTC 1 cut(s) 946
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 231, 352, 616
EcoT14I CCWWGG 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 8 cut(s) 202, 284, 553, 569, 694, 748, 763, 980
FatI CATG 8 cut(s) 198, 280, 549, 565, 690, 744, 759, 976
Fnu4HI GCNGC 3 cut(s) 69, 342, 622
FokI GGATG 5 cut(s) 77, 377, 813, 822, 919
FriOI GRGCYC 1 cut(s) 948
Fsp4HI GCNGC 3 cut(s) 69, 342, 622
FspBI CTAG 3 cut(s) 432, 570, 639
GlaI GCGC 1 cut(s) 984
GluI GCNGC 3 cut(s) 69, 342, 622
HaeIII GGCC 3 cut(s) 18, 172, 621
HapII CCGG 1 cut(s) 345
HhaI GCGC 1 cut(s) 985
Hin1II CATG 8 cut(s) 202, 284, 553, 569, 694, 748, 763, 980
Hin6I GCGC 1 cut(s) 983
HinP1I GCGC 1 cut(s) 983
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 2 cut(s) 734, 763
HpaII CCGG 1 cut(s) 345
HphI GGTGA 1 cut(s) 875
Hpy166II GTNNAC 1 cut(s) 403
Hpy188III TCNNGA 4 cut(s) 432, 770, 913, 962
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 49, 149, 188, 341, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 530, 630, 982
HpyF3I CTNAG 3 cut(s) 321, 397, 887
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 8 cut(s) 202, 284, 553, 569, 694, 748, 763, 980
HspAI GCGC 1 cut(s) 983
Kzo9I GATC 2 cut(s) 151, 680
LguI GCTCTTC 2 cut(s) 311, 953
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 2 cut(s) 55, 353
LweI GCATC 4 cut(s) 55, 772, 791, 970
MaeI CTAG 3 cut(s) 432, 570, 639
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 153, 682
MboI GATC 2 cut(s) 151, 680
MboII GAAGA 7 cut(s) 120, 298, 399, 734, 791, 940, 941
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 2 cut(s) 151, 680
MhlI GDGCHC 2 cut(s) 577, 948
MluCI AATT 6 cut(s) 93, 144, 241, 257, 486, 920
MlyI GAGTC 1 cut(s) 757
MmeI TCCRAC 1 cut(s) 432
MseI TTAA 4 cut(s) 141, 273, 297, 497
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 3 cut(s) 233, 354, 618
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 3 cut(s) 233, 354, 618
MwoI GCNNNNNNNGC 4 cut(s) 24, 530, 630, 982
NdeII GATC 2 cut(s) 151, 680
NlaIII CATG 8 cut(s) 202, 284, 553, 569, 694, 748, 763, 980
NlaIV GGNNCC 2 cut(s) 19, 634
NspI RCATGY 2 cut(s) 569, 748
PaeI GCATGC 1 cut(s) 569
PciSI GCTCTTC 2 cut(s) 311, 953
PfeI GAWTC 1 cut(s) 734
PflMI CCANNNNNTGG 2 cut(s) 423, 676
PkrI GCNGC 3 cut(s) 70, 343, 623
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
Psp124BI GAGCTC 1 cut(s) 948
Psp1406I AACGTT 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 231, 352, 616
PspGI CCWGG 3 cut(s) 231, 352, 616
PspN4I GGNNCC 2 cut(s) 19, 634
PspPI GGNCC 2 cut(s) 17, 170
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PsuI RGATCY 2 cut(s) 151, 680
RsaI GTAC 3 cut(s) 438, 606, 864
RsaNI GTAC 3 cut(s) 437, 605, 863
SacI GAGCTC 1 cut(s) 948
SapI GCTCTTC 2 cut(s) 311, 953
SaqAI TTAA 4 cut(s) 141, 273, 297, 497
SatI GCNGC 3 cut(s) 69, 342, 622
Sau3AI GATC 2 cut(s) 151, 680
Sau96I GGNCC 2 cut(s) 17, 170
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 3 cut(s) 233, 354, 618
SduI GDGCHC 2 cut(s) 577, 948
SfaNI GCATC 4 cut(s) 55, 772, 791, 970
SfcI CTRYAG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 645, 768
SmoI CTYRAG 2 cut(s) 645, 768
SphI GCATGC 1 cut(s) 569
Sse9I AATT 6 cut(s) 93, 144, 241, 257, 486, 920
SsiI CCGC 3 cut(s) 622, 636, 866
SspI AATATT 1 cut(s) 936
SspMI CTAG 3 cut(s) 432, 570, 639
SstI GAGCTC 1 cut(s) 948
StyD4I CCNGG 3 cut(s) 231, 352, 616
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 108, 543
TasI AATT 6 cut(s) 93, 144, 241, 257, 486, 920
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 4 cut(s) 141, 273, 297, 497
Tru9I TTAA 4 cut(s) 141, 273, 297, 497
TseI GCWGC 2 cut(s) 68, 341
TspDTI ATGAA 6 cut(s) 298, 410, 479, 525, 543, 726
Van91I CCANNNNNTGG 2 cut(s) 423, 676
XapI RAATTY 3 cut(s) 241, 257, 486
XbaI TCTAGA 1 cut(s) 431
XceI RCATGY 2 cut(s) 569, 748
XspI CTAG 3 cut(s) 432, 570, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.