RchiOBHm_Chr7g0178281

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Reverse (-)
987517 .. 989628
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15888

Sequence Viewer

Length: 1077 bp
ATGGCAGCTGAGGATATCAGTAAAGTCTGTGAAGCACATCCTATGATTGGTGGAGATGGCCCCAACAGCTATGCCAAGAACTCCACTTACCAGAAAGGATTTTTGGATGTTGCCAAAGAACTTGTAAGAAAGGCAATTGCAGAAAAGCTTGACATAGACATCTCGTCATCTTCCACCTCCTTCAAAATTGCAGACCTGGGTTGCTCTGTTGGACCCAATACATTTTTTGCAGTTGAAAACATAGTTGAAGCTGTGGAACTCAAGTACCAAGGGCAAGGGATGAATTCGCAAATCCCTGAATTTCAAGTATTCTTTAATGATCATACCTCAAATGACTTTAACATGCTCTTCAAGTCCCTCCCTCAGAACAGGCGATACTATGCAGCTGGTGTGCCGGGTTCATTCTATGGCCGGTTATTTCCTAATGCTTCCATTCACATTGCTCACTCTTCTTATGGCATTCATTTTCTTTCAAGAGTACCGAAAGAAGTGATGGATAGAAACAGTCCTGCTTGGAATAGAGGACACATCTGTTACTCAAACTCCACAGATGAAGTAGTGAGGGCTTACAAAGCTCAATATGCCGAGGACATGGAATGCTTCCTGCATGCTAGGGCGCAAGAAACTGTGCATGGAGGACTGATGCTACTTACTTTTCCAGGCAGCCCCGATGGCTCTCCTCATTCTCGTTCTCTTGTGAGCTTGGAACTTCTTGGATCTTGCCTCATGGACTTGGTTAGAAAGGGAGTTGTTAGCGAAGAGAAGGTGGATTCATTTAACATGCCTGTGTATTCCATGTCACCTCAAGAACTTGAAGTTGCTGTCAAACGAAATGGATGCTTTAGCATAGACATAATGGCAGAGTTACCTCGTCCCTTGGCACACGACACTCTTTCAATATCCCCGATGATTGCTTCTCACATAAGAGCTGCTATGGAGGGGATGATAAAGAAGCAATTTGGAGAAGAAATCTTAGATGAGCTTTTCGACTTGTACCGACAAAAATGTGAGCAATCAGTAATTAACACACTGCTTGGAGACACCTTTCTTGTTGTTCTTAGACGTAAAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

358

Amino Acids

39.83

Weight (kDa)

5.69

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 50 - 341 9.1e-105 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 724
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 2 cut(s) 283, 299
AfaI GTAC 3 cut(s) 266, 480, 995
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 8 cut(s) 184, 236, 248, 305, 352, 474, 815, 897
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 195, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 9 cut(s) 8, 69, 148, 251, 386, 575, 702, 929, 982
AluI AGCT 9 cut(s) 8, 69, 148, 251, 386, 575, 702, 929, 982
Alw26I GTCTC 1 cut(s) 1032
AlwI GGATC 1 cut(s) 724
AoxI GGCC 2 cut(s) 58, 409
ApeKI GCWGC 4 cut(s) 5, 383, 663, 929
ApoI RAATTY 2 cut(s) 283, 299
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 2 cut(s) 59, 212
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 792
AvaII GGWCC 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 17, 395, 675, 916
BccI CCATC 3 cut(s) 50, 487, 665
BcgI CGANNNNNNTGC 2 cut(s) 819, 853
BciT130I CCWGG 2 cut(s) 197, 660
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 1032
BfaI CTAG 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 672
BisI GCNGC 4 cut(s) 6, 384, 664, 930
BlsI GCNGC 4 cut(s) 7, 385, 665, 931
Bme1390I CCNGG 3 cut(s) 197, 396, 660
Bme18I GGWCC 1 cut(s) 212
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 59, 212
BmiI GGNNCC 2 cut(s) 61, 214
BmrFI CCNGG 3 cut(s) 197, 396, 660
BmsI GCATC 2 cut(s) 633, 827
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 245, 789
BpuMI CCSGG 1 cut(s) 396
BsaJI CCNNGG 4 cut(s) 196, 268, 585, 876
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 2 cut(s) 197, 660
BseDI CCNNGG 4 cut(s) 196, 268, 585, 876
BseGI GGATG 5 cut(s) 37, 112, 285, 842, 948
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 669
BseXI GCAGC 4 cut(s) 17, 395, 675, 916
BshFI GGCC 2 cut(s) 60, 411
BsiSI CCGG 2 cut(s) 395, 412
BslFI GGGAC 2 cut(s) 340, 858
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 1032
BsmFI GGGAC 2 cut(s) 340, 858
BsmI GAATGC 2 cut(s) 459, 602
BsnI GGCC 2 cut(s) 60, 411
Bsp143I GATC 2 cut(s) 319, 716
BspANI GGCC 2 cut(s) 60, 411
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 61, 214
BspPI GGATC 1 cut(s) 724
BspQI GCTCTTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 4 cut(s) 196, 268, 585, 876
BssMI GATC 2 cut(s) 319, 716
BssT1I CCWWGG 2 cut(s) 268, 876
Bst2UI CCWGG 2 cut(s) 197, 660
Bst4CI ACNGT 2 cut(s) 506, 628
Bst6I CTCTTC 3 cut(s) 353, 454, 753
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 9, 363, 973, 1058
BstF5I GGATG 5 cut(s) 37, 112, 285, 842, 948
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 2 cut(s) 322, 719
BstMAI GTCTC 1 cut(s) 1032
BstMBI GATC 2 cut(s) 319, 716
BstMWI GCNNNNNNNGC 4 cut(s) 66, 572, 581, 672
BstNI CCWGG 2 cut(s) 197, 660
BstNSI RCATGY 3 cut(s) 346, 611, 784
BstSCI CCNGG 3 cut(s) 195, 394, 658
BstV1I GCAGC 4 cut(s) 17, 395, 675, 916
BstX2I RGATCY 1 cut(s) 716
BstYI RGATCY 1 cut(s) 716
BsuRI GGCC 2 cut(s) 60, 411
BtsCI GGATG 5 cut(s) 37, 112, 285, 842, 948
BtsI GCAGTG 1 cut(s) 1028
BtsIMutI CAGTG 1 cut(s) 1028
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 59, 212
Csp6I GTAC 3 cut(s) 265, 479, 994
CviAII CATG 7 cut(s) 343, 592, 608, 632, 727, 781, 796
CviQI GTAC 3 cut(s) 265, 479, 994
DdeI CTNAG 4 cut(s) 9, 363, 973, 1058
DpnI GATC 2 cut(s) 321, 718
DpnII GATC 2 cut(s) 319, 716
DriI GACNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 353, 454, 753
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 3 cut(s) 353, 454, 753
Eco130I CCWWGG 2 cut(s) 268, 876
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 195, 658
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 268, 876
ErhI CCWWGG 2 cut(s) 268, 876
FaeI CATG 7 cut(s) 346, 595, 611, 635, 730, 784, 799
FaqI GGGAC 2 cut(s) 340, 858
FatI CATG 7 cut(s) 342, 591, 607, 631, 726, 780, 795
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 6, 384, 664, 930
FokI GGATG 5 cut(s) 24, 119, 292, 849, 955
Fsp4HI GCNGC 4 cut(s) 6, 384, 664, 930
FspBI CTAG 1 cut(s) 612
GlaI GCGC 1 cut(s) 618
GluI GCNGC 4 cut(s) 6, 384, 664, 930
HaeIII GGCC 2 cut(s) 60, 411
HapII CCGG 2 cut(s) 395, 412
HhaI GCGC 1 cut(s) 619
Hin1II CATG 7 cut(s) 346, 595, 611, 635, 730, 784, 799
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 770
HpaII CCGG 2 cut(s) 395, 412
HphI GGTGA 1 cut(s) 792
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 2 cut(s) 474, 806
HpyAV CCTTC 2 cut(s) 190, 757
HpyCH4III ACNGT 2 cut(s) 506, 628
HpyCH4IV ACGT 1 cut(s) 1063
HpyCH4V TGCA 6 cut(s) 140, 191, 230, 383, 607, 631
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 572, 581, 672
HpyF3I CTNAG 4 cut(s) 9, 363, 973, 1058
HpySE526I ACGT 1 cut(s) 1063
Hsp92II CATG 7 cut(s) 346, 595, 611, 635, 730, 784, 799
HspAI GCGC 1 cut(s) 617
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 2 cut(s) 319, 716
LguI GCTCTTC 1 cut(s) 353
Lsp1109I GCAGC 4 cut(s) 17, 395, 675, 916
LweI GCATC 2 cut(s) 633, 827
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 1063
MaeIII GTNAC 3 cut(s) 533, 798, 864
MalI GATC 2 cut(s) 321, 718
MboI GATC 2 cut(s) 319, 716
MboII GAAGA 5 cut(s) 162, 340, 441, 770, 977
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 716
MluCI AATT 6 cut(s) 135, 186, 283, 299, 956, 1020
MmeI TCCRAC 1 cut(s) 190
MseI TTAA 4 cut(s) 315, 339, 777, 1023
MslI CAYNNNNRTG 1 cut(s) 785
MspA1I CMGCKG 2 cut(s) 8, 386
MspI CCGG 2 cut(s) 395, 412
MspR9I CCNGG 3 cut(s) 197, 396, 660
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 2 cut(s) 459, 602
MvaI CCWGG 2 cut(s) 197, 660
MwoI GCNNNNNNNGC 4 cut(s) 66, 572, 581, 672
NciI CCSGG 1 cut(s) 396
NdeII GATC 2 cut(s) 319, 716
NlaIII CATG 7 cut(s) 346, 595, 611, 635, 730, 784, 799
NlaIV GGNNCC 2 cut(s) 61, 214
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 1 cut(s) 798
NspI RCATGY 3 cut(s) 346, 611, 784
PaeI GCATGC 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 353
PctI GAATGC 2 cut(s) 459, 602
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 4 cut(s) 7, 385, 665, 931
Psp6I CCWGG 2 cut(s) 195, 658
PspGI CCWGG 2 cut(s) 195, 658
PspN4I GGNNCC 2 cut(s) 61, 214
PspPI GGNCC 2 cut(s) 59, 212
PsrI GAACNNNNNNTAC 4 cut(s) 71, 103, 359, 391
PsuI RGATCY 1 cut(s) 716
PvuII CAGCTG 2 cut(s) 8, 386
RsaI GTAC 3 cut(s) 266, 480, 995
RsaNI GTAC 3 cut(s) 265, 479, 994
RseI CAYNNNNRTG 1 cut(s) 785
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 4 cut(s) 315, 339, 777, 1023
SatI GCNGC 4 cut(s) 6, 384, 664, 930
Sau3AI GATC 2 cut(s) 319, 716
Sau96I GGNCC 2 cut(s) 59, 212
ScrFI CCNGG 3 cut(s) 197, 396, 660
SfaNI GCATC 2 cut(s) 633, 827
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 260, 804
SmoI CTYRAG 2 cut(s) 260, 804
SphI GCATGC 1 cut(s) 611
Sse9I AATT 6 cut(s) 135, 186, 283, 299, 956, 1020
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 3 cut(s) 195, 394, 658
StyI CCWWGG 2 cut(s) 268, 876
TaaI ACNGT 2 cut(s) 506, 628
TaiI ACGT 1 cut(s) 1066
TaqI TCGA 1 cut(s) 987
TasI AATT 6 cut(s) 135, 186, 283, 299, 956, 1020
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 4 cut(s) 315, 339, 777, 1023
Tru9I TTAA 4 cut(s) 315, 339, 777, 1023
TscAI CASTG 1 cut(s) 1035
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 4 cut(s) 5, 383, 663, 929
Tsp45I GTSAC 1 cut(s) 798
TspDTI ATGAA 5 cut(s) 296, 390, 452, 567, 762
TspRI CASTG 1 cut(s) 1035
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 2 cut(s) 283, 299
XceI RCATGY 3 cut(s) 346, 611, 784
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.