RchiOBHm_Chr7g0179021

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Forward (+)
1485463 .. 1486375
913 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15954

Sequence Viewer

Length: 750 bp
ATGCTCTTCAAAACCCTTCCTCAGAACAAGCGATACTATGCAGCTGGTGTGTCAGGTTCTTTCTATGGCCGGTTATTTCCTAATGCTTCCATTCACATTGCTCACTCTTCTTATGCCATTCCATGGCTTTCAAGAGTTCCGAAAGCAGTGATGGATAGTAGCAGTCCTGCTTGGAACAAAGGTCGAATTCACTACTCAGATTCCACAGATGAAGTAATAAGGGCTTATGAAACTCAATATACTGAGGACATGAAATGCTTCCTGCAAGCTAGGGCACATGAGATTGTGTATGGAGGACTAATTGTACTCACCTTTCCAGGCCGCCTCGATGGCACCCCACATTCTGATGCTCCTCCAAATGTGATCTTCCAACTTTTAGGATCTTCCATCCAGGACTTGGTCACAAAGGGAGTTGTTAGCAAAGAGAAATTGGATTCATTTAACATACCAACATATAACATGTCACCCCAAGAACTAGTAGCTGTTGTAGAACGAAATAAATGCTTTAGCATAGAGAAAATGGTAGATGTACCTCTTCCCTTGGTACATGACCCTGTCTTAAAGGCACAGCTACTTGCCTCTCACGTGAGAGCTGGCATGGAGGGGGACCTCCTCAAGCAGCAATTTGGAGAAGAAATCTTAGACGAGCTCTTTAATTTGTTTCGCAAAAAATGTGAAGAGCATGACTCCAGACTTGATCCAGAGAAATCAGTCAACTTTCTGGTTGTGCTTAGACGCAAGGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

249

Amino Acids

28.13

Weight (kDa)

6.71

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 9 - 246 9.4e-74 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 2 cut(s) 123, 397
AciI CCGC 1 cut(s) 322
AclWI GGATC 2 cut(s) 388, 692
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 186
AcvI CACGTG 1 cut(s) 586
AfaI GTAC 3 cut(s) 306, 531, 546
AfiI CCNNNNNNNGG 2 cut(s) 123, 397
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 2 cut(s) 10, 132
AhlI ACTAGT 1 cut(s) 475
AjnI CCWGG 2 cut(s) 316, 390
AluBI AGCT 6 cut(s) 44, 269, 482, 571, 593, 649
AluI AGCT 6 cut(s) 44, 269, 482, 571, 593, 649
Alw21I GWGCWC 1 cut(s) 651
AlwI GGATC 2 cut(s) 388, 692
AoxI GGCC 2 cut(s) 67, 319
ApeKI GCWGC 2 cut(s) 41, 619
ApoI RAATTY 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 2 cut(s) 301, 456
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 651
BbrPI CACGTG 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 2 cut(s) 53, 631
BccI CCATC 3 cut(s) 145, 323, 395
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 2 cut(s) 318, 392
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 2 cut(s) 270, 476
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 3 cut(s) 42, 322, 620
BlsI GCNGC 3 cut(s) 43, 323, 621
Bme1390I CCNGG 2 cut(s) 318, 392
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 2 cut(s) 334, 608
BmrFI CCNGG 2 cut(s) 318, 392
BmsI GCATC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpmI CTGGAG 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 599
BsaAI YACGTR 1 cut(s) 586
BsaJI CCNNGG 2 cut(s) 122, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 397
Bse118I RCCGGY 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 318, 392
BseDI CCNNGG 2 cut(s) 122, 540
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 123, 397
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 3 cut(s) 35, 210, 234
BseRI GAGGAG 2 cut(s) 342, 602
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 53, 631
BshFI GGCC 2 cut(s) 69, 321
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 123, 397
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 2 cut(s) 69, 321
Bsp1286I GDGCHC 2 cut(s) 277, 651
Bsp143I GATC 3 cut(s) 363, 380, 697
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 1 cut(s) 322
BspANI GGCC 2 cut(s) 69, 321
BspCNI CTCAG 3 cut(s) 34, 209, 235
BspLI GGNNCC 2 cut(s) 334, 608
BspPI GGATC 2 cut(s) 388, 692
BspQI GCTCTTC 2 cut(s) 11, 672
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 122, 540
BssMI GATC 3 cut(s) 363, 380, 697
BssT1I CCWWGG 2 cut(s) 122, 540
Bst2UI CCWGG 2 cut(s) 318, 392
Bst6I CTCTTC 4 cut(s) 11, 112, 540, 672
BstBAI YACGTR 1 cut(s) 586
BstC8I GCNNGC 2 cut(s) 267, 595
BstDEI CTNAG 5 cut(s) 21, 196, 243, 640, 731
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 387
BstKTI GATC 3 cut(s) 366, 383, 700
BstMBI GATC 3 cut(s) 363, 380, 697
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 2 cut(s) 318, 392
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 316, 390
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 53, 631
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 2 cut(s) 69, 321
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 267, 595
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 1 cut(s) 744
Csp6I GTAC 3 cut(s) 305, 530, 545
CviAII CATG 7 cut(s) 123, 250, 278, 460, 548, 598, 683
CviQI GTAC 3 cut(s) 305, 530, 545
DdeI CTNAG 5 cut(s) 21, 196, 243, 640, 731
DpnI GATC 3 cut(s) 365, 382, 699
DpnII GATC 3 cut(s) 363, 380, 697
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 4 cut(s) 11, 112, 540, 672
EarI CTCTTC 4 cut(s) 11, 112, 540, 672
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 122, 540
Eco24I GRGCYC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 649
Eco72I CACGTG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 649
EcoO109I RGGNCCY 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 316, 390
EcoT14I CCWWGG 2 cut(s) 122, 540
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 122, 540
FaeI CATG 7 cut(s) 126, 253, 281, 463, 551, 601, 686
FaqI GGGAC 1 cut(s) 620
FatI CATG 7 cut(s) 122, 249, 277, 459, 547, 597, 682
Fnu4HI GCNGC 3 cut(s) 42, 322, 620
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 3 cut(s) 42, 322, 620
FspBI CTAG 2 cut(s) 270, 476
GluI GCNGC 3 cut(s) 42, 322, 620
GsuI CTGGAG 1 cut(s) 673
HaeIII GGCC 2 cut(s) 69, 321
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 744
Hin1II CATG 7 cut(s) 126, 253, 281, 463, 551, 601, 686
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 3 cut(s) 200, 434, 686
HpaII CCGG 1 cut(s) 70
HphI GGTGA 2 cut(s) 301, 456
Hpy166II GTNNAC 1 cut(s) 715
Hpy188I TCNGA 4 cut(s) 24, 141, 199, 346
Hpy188III TCNNGA 3 cut(s) 132, 690, 701
Hpy8I GTNNAC 1 cut(s) 715
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 2 cut(s) 41, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 5 cut(s) 21, 196, 243, 640, 731
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 7 cut(s) 126, 253, 281, 463, 551, 601, 686
Kzo9I GATC 3 cut(s) 363, 380, 697
LguI GCTCTTC 2 cut(s) 11, 672
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 53, 631
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 270, 476
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 2 cut(s) 400, 462
MalI GATC 3 cut(s) 365, 382, 699
MboI GATC 3 cut(s) 363, 380, 697
MboII GAAGA 6 cut(s) 99, 358, 375, 527, 644, 689
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 2 cut(s) 277, 651
MluCI AATT 5 cut(s) 186, 300, 428, 623, 655
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 441, 560, 654
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 318, 392
MvaI CCWGG 2 cut(s) 318, 392
MwoI GCNNNNNNNGC 1 cut(s) 330
NcoI CCATGG 1 cut(s) 122
NdeII GATC 3 cut(s) 363, 380, 697
NlaIII CATG 7 cut(s) 126, 253, 281, 463, 551, 601, 686
NlaIV GGNNCC 2 cut(s) 334, 608
NmuCI GTSAC 2 cut(s) 400, 462
NspI RCATGY 1 cut(s) 463
PciI ACATGT 1 cut(s) 459
PciSI GCTCTTC 2 cut(s) 11, 672
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 200, 434
PflFI GACNNNGTC 2 cut(s) 398, 554
PflMI CCANNNNNTGG 2 cut(s) 123, 397
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 3 cut(s) 43, 323, 621
PleI GAGTC 1 cut(s) 680
PmaCI CACGTG 1 cut(s) 586
PmlI CACGTG 1 cut(s) 586
PpsI GAGTC 1 cut(s) 680
Ppu21I YACGTR 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 607
PscI ACATGT 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 651
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 2 cut(s) 316, 390
PspCI CACGTG 1 cut(s) 586
PspGI CCWGG 2 cut(s) 316, 390
PspN4I GGNNCC 2 cut(s) 334, 608
PspPI GGNCC 1 cut(s) 607
PspPPI RGGWCCY 1 cut(s) 607
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PsuI RGATCY 1 cut(s) 380
PsyI GACNNNGTC 2 cut(s) 398, 554
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 306, 531, 546
RsaNI GTAC 3 cut(s) 305, 530, 545
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 2 cut(s) 11, 672
SaqAI TTAA 3 cut(s) 441, 560, 654
SatI GCNGC 3 cut(s) 42, 322, 620
Sau3AI GATC 3 cut(s) 363, 380, 697
Sau96I GGNCC 1 cut(s) 607
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 2 cut(s) 318, 392
SduI GDGCHC 2 cut(s) 277, 651
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 607
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 5 cut(s) 186, 300, 428, 623, 655
SsiI CCGC 1 cut(s) 322
SspMI CTAG 2 cut(s) 270, 476
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 316, 390
StyI CCWWGG 2 cut(s) 122, 540
TaiI ACGT 1 cut(s) 588
TaqI TCGA 2 cut(s) 184, 327
TasI AATT 5 cut(s) 186, 300, 428, 623, 655
TatI WGTACW 1 cut(s) 304
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 200, 434
Tru1I TTAA 3 cut(s) 441, 560, 654
Tru9I TTAA 3 cut(s) 441, 560, 654
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 400, 462
TseI GCWGC 2 cut(s) 41, 619
Tsp45I GTSAC 2 cut(s) 400, 462
TspDTI ATGAA 4 cut(s) 225, 243, 266, 426
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 2 cut(s) 398, 554
Van91I CCANNNNNTGG 2 cut(s) 123, 397
VpaK11BI GGWCC 1 cut(s) 607
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 270, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.