Rroxscaffold_5G00345920
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000151
Physical Location & Seq
Reverse (-)
16539063 .. 16546162
7100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345920.1

Sequence Viewer

Length: 1077 bp
ATGGCATCAGAGAAAATCAGAGAAGCATATCCAATGAAAGGTGGAGATGGCCCCAATAGCTATGCCAAGAACTCTACTTACCAGAGAGAAGCTGTGAAGTCTATCAAAGAACTTGTAACCAACGAAATTGCAGAAAAAATTGACTTGTTACCTTCCAACGCCTTTAACATTGCTGATCTGGGTTGCTCTGTTGGTCCTAATACATTCTCTGCAGTTGAAAACATACTTGAAGCTGTGAAGCTCAAGTATCAAAGCCAAGGACTGATGAACCCCAAAATGCCTGAAGTTCAAGTTTTCTTTAATGATCATACCTCAAATGATTTTAACTTGCTCTTCAAATCCCTCCCTTCAAACAGGCAATACTATGCCGTGGGAGTTCCAGGTTCTTTCTTTGGCCGCCTCTTCCCAAGTGCTTCCATTCACTTGTTTCACTCTTCTTATGCCATTCAATGGCTTTCTGGAGTACCAAAAGAGATAGTGGACGAAAACTGTTCGGCTTGGAATAAGGGACGGATTCATTACCTAACTTCCACTGACGAAGTGGCAAGGGCTTATGGAACTCAATGTGCGGAGGACATGGAGTGTTTCCTGCATGCTAGGTCACAAGAACTTGTGTATGGAGGACTAATGGTACTTATCTTTCCAGCTGGCCCCCCACATGGTACCCCTGTTTCTCATACCATTGCGTATTTGACCATACATCTTTTAGAAGCTTGTCTTCTGGACATGGTTACAAAGGGAATAGTTAGCGAAGAGAAAGTAGATTCATTTAACTTACCTATGTATGCCTCGTCTCCCCAAGAACTGGAAGAAGTTGTAAAAGAAAATGGATGTTTTAGCATAGAGACATTAAAAACCTTTACTCGTGTGTTAGCAGATGACACCGTCTCAAACCCCAAACAATTTGCATCTCAAGGGAAAGCTGCCTTCGAGGGCCTAATCAAAGAGCATTTTGGAGAAGAAATCTTAGATGAGCTCTTCGACTTGTATCATAAGAAACTTGAGGAAGAACTCTCCATCGTTAAGCCAAGGAAGGCAACTAGCACTCTTGTCGTGCTTAGGCGCAAGGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

358

Amino Acids

39.89

Weight (kDa)

5.47

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 49 - 355 1.4e-103 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 662
AccB7I CCANNNNNTGG 2 cut(s) 450, 805
AciI CCGC 2 cut(s) 397, 569
AcoI YGGCCR 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 3 cut(s) 465, 633, 664
AfiI CCNNNNNNNGG 4 cut(s) 38, 450, 659, 805
AgsI TTSAA 6 cut(s) 218, 230, 290, 337, 351, 449
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 8 cut(s) 60, 92, 233, 241, 647, 713, 923, 976
AluI AGCT 8 cut(s) 60, 92, 233, 241, 647, 713, 923, 976
Alw21I GWGCWC 1 cut(s) 978
Alw26I GTCTC 3 cut(s) 798, 839, 892
AoxI GGCC 4 cut(s) 49, 394, 649, 934
ApeKI GCWGC 1 cut(s) 923
Asp718I GGTACC 1 cut(s) 662
AspLEI GCGC 1 cut(s) 1065
AspS9I GGNCC 4 cut(s) 50, 194, 650, 934
AvaII GGWCC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 654, 687
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 978
BauI CACGAG 1 cut(s) 864
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 978
BbvI GCAGC 1 cut(s) 910
BccI CCATC 2 cut(s) 41, 1025
BceAI ACGGC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 798, 839, 892
BfaI CTAG 2 cut(s) 597, 1041
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 397, 924
BlsI GCNGC 2 cut(s) 398, 925
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 4 cut(s) 50, 194, 650, 934
BmiI GGNNCC 3 cut(s) 52, 652, 664
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 14, 917
BpiI GAAGAC 1 cut(s) 710
BpmI CTGGAG 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 1058
BpuEI CTTGAG 3 cut(s) 227, 897, 1022
BsaJI CCNNGG 3 cut(s) 256, 369, 1028
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 450, 659, 805
Bse1I ACTGG 1 cut(s) 810
Bse3DI GCAATG 2 cut(s) 168, 681
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 256, 369, 1028
BseGI GGATG 1 cut(s) 836
BseLI CCNNNNNNNGG 4 cut(s) 38, 450, 659, 805
BseMI GCAATG 2 cut(s) 168, 681
BseNI ACTGG 1 cut(s) 810
BseXI GCAGC 1 cut(s) 910
BshFI GGCC 4 cut(s) 51, 396, 651, 936
BshNI GGYRCC 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 978
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 4 cut(s) 38, 450, 659, 805
BsmAI GTCTC 3 cut(s) 798, 839, 892
BsmBI CGTCTC 2 cut(s) 798, 892
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 4 cut(s) 51, 396, 651, 936
Bsp1286I GDGCHC 1 cut(s) 978
Bsp143I GATC 2 cut(s) 175, 304
BspACI CCGC 2 cut(s) 397, 569
BspANI GGCC 4 cut(s) 51, 396, 651, 936
BspLI GGNNCC 3 cut(s) 52, 652, 664
BspMAI CTGCAG 1 cut(s) 214
BspQI GCTCTTC 2 cut(s) 338, 983
BspT107I GGYRCC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 168, 681
BsrI ACTGG 1 cut(s) 810
BssECI CCNNGG 3 cut(s) 256, 369, 1028
BssMI GATC 2 cut(s) 175, 304
BssSI CACGAG 1 cut(s) 864
BssT1I CCWWGG 2 cut(s) 256, 1028
Bst2BI CACGAG 1 cut(s) 864
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 491, 886
Bst6I CTCTTC 5 cut(s) 338, 407, 439, 747, 983
BstC8I GCNNGC 2 cut(s) 594, 649
BstDEI CTNAG 2 cut(s) 967, 1058
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 836
BstHHI GCGC 1 cut(s) 1065
BstKTI GATC 2 cut(s) 178, 307
BstMAI GTCTC 3 cut(s) 798, 839, 892
BstMBI GATC 2 cut(s) 175, 304
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 910
BstV2I GAAGAC 1 cut(s) 710
BsuRI GGCC 4 cut(s) 51, 396, 651, 936
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 836
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 594, 649
CfoI GCGC 1 cut(s) 1065
Cfr13I GGNCC 4 cut(s) 50, 194, 650, 934
Csp6I GTAC 3 cut(s) 464, 632, 663
CviAII CATG 4 cut(s) 577, 593, 659, 727
CviQI GTAC 3 cut(s) 464, 632, 663
DdeI CTNAG 2 cut(s) 967, 1058
DpnI GATC 2 cut(s) 177, 306
DpnII GATC 2 cut(s) 175, 304
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 5 cut(s) 338, 407, 439, 747, 983
EarI CTCTTC 5 cut(s) 338, 407, 439, 747, 983
Ecl136II GAGCTC 1 cut(s) 976
Eco130I CCWWGG 2 cut(s) 256, 1028
Eco24I GRGCYC 1 cut(s) 978
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 976
EcoO109I RGGNCCY 1 cut(s) 934
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 256, 1028
EcoT38I GRGCYC 1 cut(s) 978
ErhI CCWWGG 2 cut(s) 256, 1028
Esp3I CGTCTC 2 cut(s) 798, 892
FaeI CATG 4 cut(s) 580, 596, 662, 730
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FaqI GGGAC 1 cut(s) 522
FatI CATG 4 cut(s) 576, 592, 658, 726
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 397, 924
FokI GGATG 1 cut(s) 843
FriOI GRGCYC 1 cut(s) 978
Fsp4HI GCNGC 2 cut(s) 397, 924
FspBI CTAG 2 cut(s) 597, 1041
GlaI GCGC 1 cut(s) 1064
GluI GCNGC 2 cut(s) 397, 924
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 4 cut(s) 51, 396, 651, 936
HhaI GCGC 1 cut(s) 1065
Hin1II CATG 4 cut(s) 580, 596, 662, 730
Hin6I GCGC 1 cut(s) 1063
HinP1I GCGC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 711
HinfI GANTC 2 cut(s) 514, 764
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 10, 20
Hpy188III TCNNGA 2 cut(s) 459, 722
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 162, 357, 937, 1027
HpyCH4III ACNGT 2 cut(s) 491, 886
HpyCH4V TGCA 4 cut(s) 131, 212, 592, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 967, 1058
Hsp92II CATG 4 cut(s) 580, 596, 662, 730
HspAI GCGC 1 cut(s) 1063
KpnI GGTACC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 175, 304
LguI GCTCTTC 2 cut(s) 338, 983
Lsp1109I GCAGC 1 cut(s) 910
LweI GCATC 2 cut(s) 14, 917
MaeI CTAG 2 cut(s) 597, 1041
MaeIII GTNAC 4 cut(s) 115, 147, 600, 730
MalI GATC 2 cut(s) 177, 306
MboI GATC 2 cut(s) 175, 304
MboII GAAGA 9 cut(s) 325, 394, 426, 710, 764, 821, 970, 971, 1019
MhlI GDGCHC 1 cut(s) 978
MluCI AATT 3 cut(s) 126, 138, 902
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 8 cut(s) 322, 353, 410, 565, 614, 799, 925, 997
MseI TTAA 6 cut(s) 165, 300, 324, 771, 851, 1023
MspA1I CMGCKG 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 2 cut(s) 175, 304
NlaIII CATG 4 cut(s) 580, 596, 662, 730
NlaIV GGNNCC 3 cut(s) 52, 652, 664
NmuCI GTSAC 1 cut(s) 600
NspI RCATGY 1 cut(s) 596
PaeI GCATGC 1 cut(s) 596
PciSI GCTCTTC 2 cut(s) 338, 983
PfeI GAWTC 2 cut(s) 514, 764
PflFI GACNNNGTC 1 cut(s) 884
PflMI CCANNNNNTGG 2 cut(s) 450, 805
PkrI GCNGC 2 cut(s) 398, 925
Psp124BI GAGCTC 1 cut(s) 978
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 3 cut(s) 52, 652, 664
PspPI GGNCC 4 cut(s) 50, 194, 650, 934
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstI CTGCAG 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 465, 633, 664
RsaNI GTAC 3 cut(s) 464, 632, 663
SacI GAGCTC 1 cut(s) 978
SapI GCTCTTC 2 cut(s) 338, 983
SaqAI TTAA 6 cut(s) 165, 300, 324, 771, 851, 1023
SatI GCNGC 2 cut(s) 397, 924
Sau3AI GATC 2 cut(s) 175, 304
Sau96I GGNCC 4 cut(s) 50, 194, 650, 934
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 978
SfaNI GCATC 2 cut(s) 14, 917
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 3 cut(s) 242, 912, 1001
SmoI CTYRAG 3 cut(s) 242, 912, 1001
SphI GCATGC 1 cut(s) 596
Sse9I AATT 3 cut(s) 126, 138, 902
SsiI CCGC 2 cut(s) 397, 569
SspMI CTAG 2 cut(s) 597, 1041
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 256, 1028
TaaI ACNGT 2 cut(s) 491, 886
TaqI TCGA 2 cut(s) 930, 981
TasI AATT 3 cut(s) 126, 138, 902
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 2 cut(s) 514, 764
Tru1I TTAA 6 cut(s) 165, 300, 324, 771, 851, 1023
Tru9I TTAA 6 cut(s) 165, 300, 324, 771, 851, 1023
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 1 cut(s) 923
Tsp45I GTSAC 1 cut(s) 600
TspDTI ATGAA 4 cut(s) 50, 281, 506, 756
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 1 cut(s) 538
Tth111I GACNNNGTC 1 cut(s) 884
Van91I CCANNNNNTGG 2 cut(s) 450, 805
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 2 cut(s) 597, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.