Rh7CG021000

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
1550139 .. 1550694
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG021000.1

Sequence Viewer

Length: 387 bp
ATGGTCTTACAGCTTTTAGGAGCCTCCCTCATGGACTTGGTTAGAAAGGGAGTAGTTAGCGAAGAGAGGGTAGATTCATTTAACATACCTGTGTATTCAATGTCTCCCAAAGAACTAGCAGCTGCTGTAGAAAGAAATGGATGTTTTAGCATAGAGATGGTGGCAGACTTGCTTGTTCCCCCGGTAGATGACACTAGCTCAATGCCACAACTAATTGCCTCTCACATTAGAGCTGGCATGGAGGGGATATTGAAGCAGCAAGTTGGAGAGGAACTTATAGATAAGCTCTTCGATTTGTATCGGGAAAAATGTGAAGAGCATATCTTCACCACAGACACAGGGAAGCCAGTTAACTTCCTTGTGGTGCTTAGACGCAAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

4.83

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 125 2.9e-27 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 99, 253
AluBI AGCT 5 cut(s) 13, 122, 198, 233, 286
AluI AGCT 5 cut(s) 13, 122, 198, 233, 286
Alw26I GTCTC 1 cut(s) 108
AlwNI CAGNNNCTG 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 119, 122, 256
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 319
BbvI GCAGC 3 cut(s) 109, 131, 268
BccI CCATC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 116, 195
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 3 cut(s) 120, 123, 257
BlsI GCNGC 3 cut(s) 121, 124, 258
Bme1390I CCNGG 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BpuMI CCSGG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 146
BseJI GATNNNNATC 1 cut(s) 297
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 3 cut(s) 109, 131, 268
BsiSI CCGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 22
BspQI GCTCTTC 2 cut(s) 293, 309
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 180
Bst6I CTCTTC 3 cut(s) 57, 293, 309
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 109, 131, 268
BtsCI GGATG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 125
CseI GACGC 1 cut(s) 381
CviAII CATG 2 cut(s) 31, 238
CviJI RGCY 7 cut(s) 13, 23, 122, 198, 233, 286, 346
CviKI_1 RGCY 7 cut(s) 13, 23, 122, 198, 233, 286, 346
DdeI CTNAG 1 cut(s) 368
Eam1104I CTCTTC 3 cut(s) 57, 293, 309
EarI CTCTTC 3 cut(s) 57, 293, 309
FaeI CATG 2 cut(s) 34, 241
FaiI YATR 6 cut(s) 32, 86, 152, 239, 278, 321
FatI CATG 2 cut(s) 30, 237
Fnu4HI GCNGC 3 cut(s) 120, 123, 257
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 120, 123, 257
FspBI CTAG 2 cut(s) 116, 195
GluI GCNGC 3 cut(s) 120, 123, 257
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 381
Hin1II CATG 2 cut(s) 34, 241
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 74
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 352
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 2 cut(s) 34, 241
KspAI GTTAAC 1 cut(s) 352
LguI GCTCTTC 2 cut(s) 293, 309
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 5 cut(s) 102, 195, 219, 324, 360
Lsp1109I GCAGC 3 cut(s) 109, 131, 268
MaeI CTAG 2 cut(s) 116, 195
MboII GAAGA 4 cut(s) 74, 280, 316, 326
MluCI AATT 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 34, 38, 60, 229, 235, 262
MseI TTAA 2 cut(s) 81, 351
MslI CAYNNNNRTG 2 cut(s) 89, 155
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 182
NciI CCSGG 1 cut(s) 182
NlaIII CATG 2 cut(s) 34, 241
NlaIV GGNNCC 1 cut(s) 22
PciSI GCTCTTC 2 cut(s) 293, 309
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 3 cut(s) 121, 124, 258
PspN4I GGNNCC 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 89, 155
SapI GCTCTTC 2 cut(s) 293, 309
SaqAI TTAA 2 cut(s) 81, 351
SatI GCNGC 3 cut(s) 120, 123, 257
ScrFI CCNGG 1 cut(s) 182
SetI ASST 6 cut(s) 15, 91, 124, 200, 235, 288
SfcI CTRYAG 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 89, 155
Sse9I AATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 116, 195
StyD4I CCNGG 1 cut(s) 180
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 213
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 81, 351
Tru9I TTAA 2 cut(s) 81, 351
TseI GCWGC 3 cut(s) 119, 122, 256
TspDTI ATGAA 1 cut(s) 66
XspI CTAG 2 cut(s) 116, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.