RLG00000009163

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000151
Physical Location & Seq
Forward (+)
47837971 .. 47839328
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009163

Sequence Viewer

Length: 990 bp
ATGGAGTCTGTCAAAGAACTTGTAACCAAAGGAATTGCAGAAAAGCTTGACATAGACCTTTTGTTACCTTCCAACTCCTTTCACATTGCGGATCTTGGTTGCTCTGTTGGTCCTAATACATTTTCTTCAGTTGAAAACATACTTGAAGCTGTGGAGCTCAAGTTTCAAGGCCAAGGACTCATGAATCCCCAAATCCCCGAATTTCAAGTTTTCTTCAATGATCATACCCCAAATGATTTTAACTTGCTCTTCAAATCCCTCAATCCCAACAGGCAATACTATGCTGTGGGAGTTCCAGGTTCTTTCTACGGCCGCCTATTCCCTAGTGCTTCAATTCACTTGTTTCACTCTTCTTTTGCTCTTCAGTGGCTTTCTGAAGTACCAAAAGATTTAGAGGACAAAAACTGTCCGGCTTGGAATAAAGGACGGATTCATTACCTCAGTTCGACTGATGAAGTAGTAAGGGCTTATAAAGCTCAATATGCTAAGAACATGGAGTCTTTTCTTCATGCTAGGGCACAAGAACTTGTGTATGGAGGACTAATGGTACTTATCATTCCTGGCTACCCACAGGGTACCCCTCTTTCTCATTCTGTGGCATATTTGACCTTACAACTCATAGAAGCCTGTCTAATTGACATGGTTAAAAAGGGAGTAATTAGCGAAGAGAAACTAGATTCATTCAACATACCAATGTATTCCATGTGCCCCCAAGAACTGGAAGCAGTTGTAGAACAAAATGGATCTTTTAGCATAGAGATATTGGAAACATTACCTCGTGTTTTAGCTGATGATGCTGTCTTAAATGCAAAACAATTTGCAGCTCACGGGAGAGCCGCTTTTGAGGGACTCATCAAACAGCAATTTGGAAAAGAAATCACAAATGAGCTCTTCGACTTGTATGGCAAGAAACTCGAGGAAGAACTCTCCATGTTTAAGCCAAGGAAGACAACTACCTTTCTTGTAGTGCTTAAGCGCAAGGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

330

Amino Acids

37.05

Weight (kDa)

5.57

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 16 - 326 1.5e-105 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
Acc65I GGTACC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 718
AciI CCGC 3 cut(s) 89, 313, 837
AclWI GGATC 2 cut(s) 99, 751
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 3 cut(s) 111, 347, 396
AfaI GTAC 3 cut(s) 381, 549, 577
AfiI CCNNNNNNNGG 1 cut(s) 718
AflII CTTAAG 1 cut(s) 971
AgsI TTSAA 8 cut(s) 134, 146, 167, 206, 217, 253, 333, 685
AjnI CCWGG 2 cut(s) 295, 559
AluBI AGCT 7 cut(s) 46, 149, 157, 476, 788, 824, 889
AluI AGCT 7 cut(s) 46, 149, 157, 476, 788, 824, 889
Alw21I GWGCWC 2 cut(s) 159, 891
AlwI GGATC 2 cut(s) 99, 751
Ama87I CYCGRG 1 cut(s) 914
AoxI GGCC 2 cut(s) 169, 310
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 575
AspLEI GCGC 1 cut(s) 978
AspS9I GGNCC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 914
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 2 cut(s) 520, 710
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 2 cut(s) 159, 891
BauI CACGAG 1 cut(s) 777
BbsI GAAGAC 1 cut(s) 953
Bbv12I GWGCWC 2 cut(s) 159, 891
BbvI GCAGC 1 cut(s) 833
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 895, 929
BciT130I CCWGG 2 cut(s) 297, 561
BclI TGATCA 1 cut(s) 220
BfaI CTAG 3 cut(s) 324, 513, 674
BfrI CTTAAG 1 cut(s) 971
BisI GCNGC 3 cut(s) 313, 822, 837
BlsI GCNGC 3 cut(s) 314, 823, 838
Bme1390I CCNGG 2 cut(s) 297, 561
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 914
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 2 cut(s) 297, 561
BmsI GCATC 1 cut(s) 784
BpiI GAAGAC 1 cut(s) 953
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 172, 941
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 723
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 297, 561
BseDI CCNNGG 2 cut(s) 172, 941
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 723
BseSI GKGCMC 2 cut(s) 520, 710
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 833
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 2 cut(s) 171, 312
BshNI GGYRCC 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 2 cut(s) 159, 891
BsiHKCI CYCGRG 1 cut(s) 914
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 861
BslI CCNNNNNNNGG 1 cut(s) 718
BsmFI GGGAC 1 cut(s) 861
BsnI GGCC 2 cut(s) 171, 312
BsoBI CYCGRG 1 cut(s) 914
Bsp1286I GDGCHC 4 cut(s) 159, 520, 710, 891
Bsp143I GATC 3 cut(s) 91, 220, 743
BspACI CCGC 3 cut(s) 89, 313, 837
BspANI GGCC 2 cut(s) 171, 312
BspCNI CTCAG 1 cut(s) 453
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 2 cut(s) 99, 751
BspQI GCTCTTC 3 cut(s) 254, 366, 896
BspT107I GGYRCC 1 cut(s) 575
BspTI CTTAAG 1 cut(s) 971
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 723
BssECI CCNNGG 2 cut(s) 172, 941
BssMI GATC 3 cut(s) 91, 220, 743
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 2 cut(s) 172, 941
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 297, 561
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 5 cut(s) 254, 355, 366, 660, 896
BstAFI CTTAAG 1 cut(s) 971
BstDEI CTNAG 2 cut(s) 440, 486
BstHHI GCGC 1 cut(s) 978
BstKTI GATC 3 cut(s) 94, 223, 746
BstMBI GATC 3 cut(s) 91, 220, 743
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 473, 482, 794
BstNI CCWGG 2 cut(s) 297, 561
BstSCI CCNGG 2 cut(s) 295, 559
BstSLI GKGCMC 2 cut(s) 520, 710
BstV1I GCAGC 1 cut(s) 833
BstV2I GAAGAC 1 cut(s) 953
BstX2I RGATCY 2 cut(s) 91, 743
BstYI RGATCY 2 cut(s) 91, 743
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 2 cut(s) 171, 312
BtsIMutI CAGTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 978
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 380, 548, 576
CviAII CATG 6 cut(s) 181, 493, 509, 640, 703, 931
CviQI GTAC 3 cut(s) 380, 548, 576
DdeI CTNAG 2 cut(s) 440, 486
DpnI GATC 3 cut(s) 93, 222, 745
DpnII GATC 3 cut(s) 91, 220, 743
EaeI YGGCCR 1 cut(s) 310
EagI CGGCCG 1 cut(s) 310
Eam1104I CTCTTC 5 cut(s) 254, 355, 366, 660, 896
EarI CTCTTC 5 cut(s) 254, 355, 366, 660, 896
Ecl136II GAGCTC 2 cut(s) 157, 889
EclXI CGGCCG 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 172, 941
Eco24I GRGCYC 2 cut(s) 159, 891
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 310
Eco53kI GAGCTC 2 cut(s) 157, 889
Eco57I CTGAAG 3 cut(s) 111, 347, 396
Eco88I CYCGRG 1 cut(s) 914
EcoICRI GAGCTC 2 cut(s) 157, 889
EcoRII CCWGG 2 cut(s) 295, 559
EcoT14I CCWWGG 2 cut(s) 172, 941
EcoT38I GRGCYC 2 cut(s) 159, 891
ErhI CCWWGG 2 cut(s) 172, 941
FaeI CATG 6 cut(s) 184, 496, 512, 643, 706, 934
FaqI GGGAC 1 cut(s) 861
FatI CATG 6 cut(s) 180, 492, 508, 639, 702, 930
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 313, 822, 837
FriOI GRGCYC 2 cut(s) 159, 891
Fsp4HI GCNGC 3 cut(s) 313, 822, 837
FspBI CTAG 3 cut(s) 324, 513, 674
GlaI GCGC 1 cut(s) 977
GluI GCNGC 3 cut(s) 313, 822, 837
HaeIII GGCC 2 cut(s) 171, 312
HapII CCGG 1 cut(s) 410
HhaI GCGC 1 cut(s) 978
Hin1II CATG 6 cut(s) 184, 496, 512, 643, 706, 934
Hin6I GCGC 1 cut(s) 976
HinP1I GCGC 1 cut(s) 976
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 7 cut(s) 5, 177, 184, 430, 497, 677, 849
HpaII CCGG 1 cut(s) 410
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 3 cut(s) 38, 809, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 482, 794
HpyF3I CTNAG 2 cut(s) 440, 486
Hsp92II CATG 6 cut(s) 184, 496, 512, 643, 706, 934
HspAI GCGC 1 cut(s) 976
KpnI GGTACC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 91, 220, 743
LguI GCTCTTC 3 cut(s) 254, 366, 896
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 9 cut(s) 256, 282, 309, 423, 546, 557, 573, 640, 704
Lsp1109I GCAGC 1 cut(s) 833
LweI GCATC 1 cut(s) 784
MaeI CTAG 3 cut(s) 324, 513, 674
MaeIII GTNAC 2 cut(s) 22, 63
MalI GATC 3 cut(s) 93, 222, 745
MboI GATC 3 cut(s) 91, 220, 743
MflI RGATCY 2 cut(s) 91, 743
MhlI GDGCHC 4 cut(s) 159, 520, 710, 891
MluCI AATT 7 cut(s) 33, 200, 333, 633, 657, 815, 863
MlyI GAGTC 4 cut(s) 14, 171, 506, 843
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 269, 388, 449, 530, 591, 786, 838, 910
MseI TTAA 5 cut(s) 240, 645, 803, 936, 972
MslI CAYNNNNRTG 1 cut(s) 692
MspCI CTTAAG 1 cut(s) 971
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 2 cut(s) 297, 561
MvaI CCWGG 2 cut(s) 297, 561
MwoI GCNNNNNNNGC 3 cut(s) 473, 482, 794
NdeII GATC 3 cut(s) 91, 220, 743
NlaIII CATG 6 cut(s) 184, 496, 512, 643, 706, 934
NlaIV GGNNCC 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 914
PagI TCATGA 1 cut(s) 180
PciSI GCTCTTC 3 cut(s) 254, 366, 896
PfeI GAWTC 3 cut(s) 184, 430, 677
PflMI CCANNNNNTGG 1 cut(s) 718
PkrI GCNGC 3 cut(s) 314, 823, 838
PleI GAGTC 4 cut(s) 13, 171, 505, 843
PpsI GAGTC 4 cut(s) 13, 171, 505, 843
PsiI TTATAA 1 cut(s) 471
Psp124BI GAGCTC 2 cut(s) 159, 891
Psp6I CCWGG 2 cut(s) 295, 559
PspGI CCWGG 2 cut(s) 295, 559
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 110
PspXI VCTCGAGB 1 cut(s) 914
PsuI RGATCY 2 cut(s) 91, 743
RsaI GTAC 3 cut(s) 381, 549, 577
RsaNI GTAC 3 cut(s) 380, 548, 576
RseI CAYNNNNRTG 1 cut(s) 692
SacI GAGCTC 2 cut(s) 159, 891
SapI GCTCTTC 3 cut(s) 254, 366, 896
SaqAI TTAA 5 cut(s) 240, 645, 803, 936, 972
SatI GCNGC 3 cut(s) 313, 822, 837
Sau3AI GATC 3 cut(s) 91, 220, 743
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 4 cut(s) 14, 171, 506, 843
ScrFI CCNGG 2 cut(s) 297, 561
SduI GDGCHC 4 cut(s) 159, 520, 710, 891
SfaNI GCATC 1 cut(s) 784
Sfr274I CTCGAG 1 cut(s) 914
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 914
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 3 cut(s) 158, 914, 971
SmoI CTYRAG 3 cut(s) 158, 914, 971
Sse9I AATT 7 cut(s) 33, 200, 333, 633, 657, 815, 863
SsiI CCGC 3 cut(s) 89, 313, 837
SspMI CTAG 3 cut(s) 324, 513, 674
SstI GAGCTC 2 cut(s) 159, 891
StyD4I CCNGG 2 cut(s) 295, 559
StyI CCWWGG 2 cut(s) 172, 941
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 3 cut(s) 446, 894, 915
TasI AATT 7 cut(s) 33, 200, 333, 633, 657, 815, 863
TauI GCSGC 2 cut(s) 315, 839
TfiI GAWTC 3 cut(s) 184, 430, 677
Tru1I TTAA 5 cut(s) 240, 645, 803, 936, 972
Tru9I TTAA 5 cut(s) 240, 645, 803, 936, 972
TscAI CASTG 1 cut(s) 371
TseI GCWGC 1 cut(s) 821
TspDTI ATGAA 5 cut(s) 197, 422, 468, 497, 669
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 718
Vha464I CTTAAG 1 cut(s) 971
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 914
XspI CTAG 3 cut(s) 324, 513, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.