RchiOBHm_Chr3g0486031

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000151
Physical Location & Seq
Reverse (-)
32933174 .. 32934125
952 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45057

Sequence Viewer

Length: 507 bp
ATGGCCGCAGAGGAAACTGGTAAATGCTCTGAAGCCTATCCAATGAAAGGAGTAATTGATGCTGCCAAAGAACTACTAAATAAGGCGATTGCAGAAAAGCTTGACATGGAAACATTTTCATCTGTCAGCTCCTTTCACATTGCAGATTTGGGTTGCTCAGTTGGGCCTAACACATTTTTTACAGTTGAAAACAAACTTGAAGTTGTTCTATTCAAGTATCAAAGCCGAGGGCTAAATTGTCAAATCCCTGAATTTCAAGTCTTCTTTAATGACCATACCTCAAATGACTTCAACATGCTCTTCAATTCCCTCCCTCAGAATAGGCAATACTATGCTGTGGGTGCGCCTAGTTCTTTCTATGGTCGAATACTCCCCGATGCTTCCATCCACCTTTTTCACTCTTCTTTTTCCCTTCATTGGCTTTCTAGAGTACCAAAAAATGTAACAGACAGCAACTCCCCTGCTTGGAAAAAAAGGACGAATACACTACTTAGACTCCACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

168

Amino Acids

19.02

Weight (kDa)

7.76

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 34 - 159 7.8e-47 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 3 cut(s) 47, 417, 465
AgsI TTSAA 6 cut(s) 188, 200, 214, 257, 292, 304
AluBI AGCT 2 cut(s) 100, 129
AluI AGCT 2 cut(s) 100, 129
AoxI GGCC 2 cut(s) 3, 164
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 392
BfaI CTAG 2 cut(s) 348, 426
BisI GCNGC 2 cut(s) 6, 63
BlsI GCNGC 2 cut(s) 7, 64
BmgT120I GGNCC 1 cut(s) 164
BmsI GCATC 2 cut(s) 49, 367
BpiI GAAGAC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 3 cut(s) 440, 470, 480
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 417, 465
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 47, 417, 465
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 171, 329
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 5, 166
BslI CCNNNNNNNGG 3 cut(s) 47, 417, 465
BsnI GGCC 2 cut(s) 5, 166
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 5, 166
BspCNI CTCAG 2 cut(s) 170, 328
BspQI GCTCTTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 305, 406
BstDEI CTNAG 3 cut(s) 157, 315, 491
BstF5I GGATG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 5, 166
BtsCI GGATG 1 cut(s) 384
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 431
CviAII CATG 2 cut(s) 106, 295
CviJI RGCY 8 cut(s) 5, 35, 100, 129, 166, 225, 232, 421
CviKI_1 RGCY 8 cut(s) 5, 35, 100, 129, 166, 225, 232, 421
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 3 cut(s) 157, 315, 491
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 305, 406
EarI CTCTTC 2 cut(s) 305, 406
Eco57I CTGAAG 1 cut(s) 51
FaeI CATG 2 cut(s) 109, 298
FaiI YATR 5 cut(s) 107, 276, 296, 333, 360
FatI CATG 2 cut(s) 105, 294
Fnu4HI GCNGC 2 cut(s) 6, 63
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 2 cut(s) 6, 63
FspBI CTAG 2 cut(s) 348, 426
GlaI GCGC 1 cut(s) 345
GluI GCNGC 2 cut(s) 6, 63
HaeIII GGCC 2 cut(s) 5, 166
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 109, 298
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 495
Hpy188I TCNGA 2 cut(s) 31, 318
Hpy188III TCNNGA 1 cut(s) 426
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 92, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 3 cut(s) 157, 315, 491
Hsp92II CATG 2 cut(s) 109, 298
HspAI GCGC 1 cut(s) 344
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 3 cut(s) 3, 261, 474
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 49, 367
MaeI CTAG 2 cut(s) 348, 426
MaeIII GTNAC 1 cut(s) 442
MboII GAAGA 3 cut(s) 253, 292, 393
MluCI AATT 4 cut(s) 54, 235, 251, 304
MlyI GAGTC 1 cut(s) 489
MnlI CCTC 5 cut(s) 4, 221, 289, 320, 324
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 341
NlaIII CATG 2 cut(s) 109, 298
NmeAIII GCCGAG 1 cut(s) 251
NspI RCATGY 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 7, 64
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 164
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 6, 63
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 489
SetI ASST 4 cut(s) 102, 131, 281, 393
SfaNI GCATC 2 cut(s) 49, 367
Sse9I AATT 4 cut(s) 54, 235, 251, 304
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 348, 426
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 364
TasI AATT 4 cut(s) 54, 235, 251, 304
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 59, 108, 404
XapI RAATTY 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 425
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 348, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.