Rorug03G0223300

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000151
Physical Location & Seq
Reverse (-)
20365635 .. 20367739
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0223300.1

Sequence Viewer

Length: 759 bp
ATGGGAGACTATCACTACATCTACAAGGACTTGGACGGAGCCTCCACCCAGTGGGACGATATTCAGGCAAAGCTCGGCAATCTTCCGCCGAAGAAGCCGGCGTTTAAGCCTCCGCCCTTCACTCCGGCCGACGACGAAGCCTCTCTTCCCAAAGACAAGTCTTGGATCGATGACAAGACCGAGCAGGACCTCGAAGATCTCGAAGACGATCCCGATCTCGACGACGATCGCTTCCTCGAAGAATACAGGAGGAAGAGGCTGTCGGAATTGAGAGAAGCAGCGAAGGTTGCAAGGTTTGGGTCAGTGGTTCCGATTTCGGGATCAGATTTTGTGCGTGAGGTTTCGCAAGCTCCACCTGACGTTTGGGTGGTGGTGATTCTCTACAAAGAAGGAATTGCAGAGTGTGGATTGTTGATGCAGTGTCTGGAAGATTTGGCAACCAAGTACCCAGCAACCAAATTTGTGAAAATAATATCCACAGACTGCATTCCTAACTACCCGGATCGTAATCTTCCCACTCTTTTAGTGTACAACAGTGGCGCTGTCAAGGCCAATCACGTTGGGTTGCGCAGCTTTGGTCGGAGGTGCACACCTGAAGGTGTGGCATTAGTTCTCTGTCAATCAGATCCTGTACTTAATGATGGGCAGAGTGTTAATGGTCGATCAAGGGAAGCTGTGATTGAGGGAGTTCGCAAGAGGTTCATAGAGAAAGTTGTGACACAACATGAAGATAAGGACGATGGATATTCAAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

252

Amino Acids

28.28

Weight (kDa)

4.79

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosducin PF02114 70 - 187 3.1e-15 Phosducin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 2 cut(s) 86, 113
AclWI GGATC 5 cut(s) 173, 203, 328, 510, 620
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 3 cut(s) 446, 530, 633
AfiI CCNNNNNNNGG 2 cut(s) 51, 317
AgsI TTSAA 1 cut(s) 750
AluBI AGCT 4 cut(s) 73, 350, 573, 674
AluI AGCT 4 cut(s) 73, 350, 573, 674
Alw21I GWGCWC 1 cut(s) 590
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 5 cut(s) 173, 203, 328, 510, 620
AlwNI CAGNNNCTG 2 cut(s) 424, 629
AoxI GGCC 2 cut(s) 126, 549
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 278, 570
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 2 cut(s) 542, 570
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 290, 582
BccI CCATC 2 cut(s) 635, 734
BcnI CCSGG 1 cut(s) 500
BfaI CTAG 1 cut(s) 757
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 279, 571
BlsI GCNGC 2 cut(s) 280, 572
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 40, 309
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 213, 507
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 317
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 2 cut(s) 213, 507
BseCI ATCGAT 1 cut(s) 168
BseJI GATNNNNATC 2 cut(s) 213, 507
BseLI CCNNNNNNNGG 2 cut(s) 51, 317
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 590
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 290, 582
BseYI CCCAGC 1 cut(s) 448
Bsh1285I CGRYCG 2 cut(s) 129, 229
BshFI GGCC 2 cut(s) 128, 551
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 129, 229
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 3 cut(s) 98, 125, 500
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 51, 317
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 128, 551
Bsp1286I GDGCHC 1 cut(s) 590
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
BspACI CCGC 2 cut(s) 86, 113
BspANI GGCC 2 cut(s) 128, 551
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 40, 309
BspPI GGATC 5 cut(s) 173, 203, 328, 510, 620
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 150, 248
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 99, 348
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 2 cut(s) 542, 570
BstKTI GATC 9 cut(s) 168, 199, 211, 217, 229, 323, 505, 628, 665
BstMBI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
BstMCI CGRYCG 2 cut(s) 129, 229
BstMWI GCNNNNNNNGC 3 cut(s) 94, 287, 548
BstSCI CCNGG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 2 cut(s) 290, 582
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 196, 625
BstYI RGATCY 2 cut(s) 196, 625
BstZI CGGCCG 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 2 cut(s) 128, 551
BsuTUI ATCGAT 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 4 cut(s) 56, 309, 425, 541
Cac8I GCNNGC 2 cut(s) 99, 348
CaiI CAGNNNCTG 2 cut(s) 424, 629
CfoI GCGC 2 cut(s) 542, 570
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 3 cut(s) 445, 529, 632
CviAII CATG 1 cut(s) 725
CviQI GTAC 3 cut(s) 445, 529, 632
DpnI GATC 9 cut(s) 167, 198, 210, 216, 228, 322, 504, 627, 664
DpnII GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 150, 248
EarI CTCTTC 2 cut(s) 150, 248
EciI GGCGGA 2 cut(s) 75, 102
EclXI CGGCCG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 187
FaeI CATG 1 cut(s) 728
FaiI YATR 2 cut(s) 704, 726
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 279, 571
Fsp4HI GCNGC 2 cut(s) 279, 571
FspBI CTAG 1 cut(s) 757
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 2 cut(s) 541, 569
GluI GCNGC 2 cut(s) 279, 571
GsaI CCCAGC 1 cut(s) 452
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 128, 551
HapII CCGG 3 cut(s) 98, 125, 500
HhaI GCGC 2 cut(s) 542, 570
Hin1II CATG 1 cut(s) 728
Hin6I GCGC 2 cut(s) 540, 568
HinP1I GCGC 2 cut(s) 540, 568
HinfI GANTC 1 cut(s) 376
HpaII CCGG 3 cut(s) 98, 125, 500
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 529, 588
Hpy188I TCNGA 5 cut(s) 265, 312, 325, 582, 625
Hpy188III TCNNGA 5 cut(s) 200, 212, 218, 318, 425
Hpy8I GTNNAC 2 cut(s) 529, 588
Hpy99I CGWCG 4 cut(s) 134, 137, 224, 227
HpyAV CCTTC 4 cut(s) 127, 277, 383, 590
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 360, 558
HpyCH4V TGCA 5 cut(s) 290, 398, 418, 486, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 287, 548
HpySE526I ACGT 2 cut(s) 360, 558
Hsp92II CATG 1 cut(s) 728
HspAI GCGC 2 cut(s) 540, 568
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
LmnI GCTCC 2 cut(s) 38, 355
Lsp1109I GCAGC 2 cut(s) 290, 582
LweI GCATC 1 cut(s) 405
MaeI CTAG 1 cut(s) 757
MaeII ACGT 2 cut(s) 360, 558
MaeIII GTNAC 2 cut(s) 715, 752
MalI GATC 9 cut(s) 167, 198, 210, 216, 228, 322, 504, 627, 664
MboI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
MflI RGATCY 2 cut(s) 196, 625
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 3 cut(s) 266, 393, 458
MmeI TCCRAC 2 cut(s) 243, 560
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 3 cut(s) 105, 636, 654
MspI CCGG 3 cut(s) 98, 125, 500
MspR9I CCNGG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 94, 287, 548
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 500
NdeII GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 2 cut(s) 40, 309
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 715, 752
NsbI TGCGCA 1 cut(s) 569
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 2 cut(s) 280, 572
Ple19I CGATCG 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 40, 309
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 424, 629
PsuI RGATCY 2 cut(s) 196, 625
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 3 cut(s) 446, 530, 633
RsaNI GTAC 3 cut(s) 445, 529, 632
SaqAI TTAA 3 cut(s) 105, 636, 654
SatI GCNGC 2 cut(s) 279, 571
Sau3AI GATC 9 cut(s) 165, 196, 208, 214, 226, 320, 502, 625, 662
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 1 cut(s) 405
SinI GGWCC 1 cut(s) 187
Sse9I AATT 3 cut(s) 266, 393, 458
SsiI CCGC 2 cut(s) 86, 113
SspMI CTAG 1 cut(s) 757
StyD4I CCNGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 2 cut(s) 363, 561
TaqI TCGA 6 cut(s) 168, 192, 201, 219, 237, 661
TaqII GACCGA 1 cut(s) 194
TasI AATT 3 cut(s) 266, 393, 458
TatI WGTACW 2 cut(s) 528, 631
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 105, 636, 654
Tru9I TTAA 3 cut(s) 105, 636, 654
TscAI CASTG 4 cut(s) 56, 309, 425, 541
TseFI GTSAC 2 cut(s) 715, 752
TseI GCWGC 2 cut(s) 278, 570
Tsp45I GTSAC 2 cut(s) 715, 752
TspDTI ATGAA 2 cut(s) 691, 741
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 56, 309, 425, 541
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.