RchiOBHm_Chr7g0178321

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Reverse (-)
1029137 .. 1030088
952 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15891

Sequence Viewer

Length: 696 bp
ATGAGAAATGCTATAGATGCTGCCAAGGAACTGATCAAAGAGGCAGTTATCGACAAGCTTGACATCGAAAGCTTCTCATCCTCAAACGCCTTTCGAGTTATAGATCTAGGCTGTGCAGTGGGGCCTAACACGTTCGTAGCTGTGCAAAACATACTTGAAGCTGTGGAGGAAAAGTACCGAACCCGAGGGCGCAATTCTGAGCTCTTCCAATCCCTCACGCCAGACAGGAACTACTTCTCAACTGGCGTACCAGGATCTTTTTACTCTCGCTTGTTTCCCAAGGCACATCTTCACTCTGTATACTCTTCATTTTCTCTGCAATGTCTCTCTAAAGTGCCTGAGGAAGTTCTGGACAGGAGTTCCCCTGCTTGGAACAAAGGCAGGATTCATTACTCAAATTCTGCACACCAAGTTGTCGAGGCATATTCAGCTCAATATGCCAAAGACATGGAGTGCTTTCTAAGTGCTCGAGCACAAGAGAACGTCGGTGGAGGGTTGATGGCGTTTGTTGTTCCCGGCCGCCCTGATGAAACCCCTCATGCACAAAACTATTACAACATGGGACTAGACCTATTTGGTTCCTGCCTCATGGACGTGGCCAAGAAGGGTATCATTGCCGAAGACAAAATGGACTCCTTCAATCTACCGATATATAAATATATAATGCTTCTCTCCAAGAAGTGGAAGCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

231

Amino Acids

25.9

Weight (kDa)

6.96

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 19 - 70 3.7e-11 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 75 - 219 3.7e-51 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 681
AccI GTMKAC 1 cut(s) 300
AciI CCGC 1 cut(s) 520
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 2 cut(s) 517, 597
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 2 cut(s) 176, 249
AfiI CCNNNNNNNGG 2 cut(s) 369, 681
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 158, 640
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 6 cut(s) 58, 72, 140, 161, 202, 431
AluI AGCT 6 cut(s) 58, 72, 140, 161, 202, 431
Alw21I GWGCWC 3 cut(s) 204, 469, 475
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 2 cut(s) 183, 468
AoxI GGCC 3 cut(s) 122, 517, 597
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 397
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 516
AvaI CYCGRG 2 cut(s) 183, 468
AxyI CCTNAGG 1 cut(s) 339
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BalI TGGCCA 1 cut(s) 599
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 3 cut(s) 204, 469, 475
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 2 cut(s) 107, 566
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 103
BisI GCNGC 2 cut(s) 21, 520
BlsI GCNGC 2 cut(s) 22, 521
Bme1390I CCNGG 2 cut(s) 252, 516
BmeT110I CYCGRG 2 cut(s) 183, 468
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 123, 580
BmrFI CCNGG 2 cut(s) 252, 516
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 516
BsaJI CCNNGG 3 cut(s) 24, 184, 279
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 681
Bse1I ACTGG 1 cut(s) 247
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 2 cut(s) 326, 612
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 24, 184, 279
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 369, 681
BseMI GCAATG 2 cut(s) 326, 612
BseMII CTCAG 2 cut(s) 189, 330
BseNI ACTGG 1 cut(s) 247
BseX3I CGGCCG 1 cut(s) 517
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 2 cut(s) 135, 387
Bsh1285I CGRYCG 1 cut(s) 520
BshFI GGCC 3 cut(s) 124, 519, 599
BsiEI CGRYCG 1 cut(s) 520
BsiHKAI GWGCWC 3 cut(s) 204, 469, 475
BsiHKCI CYCGRG 2 cut(s) 183, 468
BsiSI CCGG 1 cut(s) 516
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 369, 681
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 3 cut(s) 124, 519, 599
BsoBI CYCGRG 2 cut(s) 183, 468
Bsp1286I GDGCHC 3 cut(s) 204, 469, 475
Bsp143I GATC 3 cut(s) 33, 103, 254
BspACI CCGC 1 cut(s) 520
BspANI GGCC 3 cut(s) 124, 519, 599
BspCNI CTCAG 2 cut(s) 190, 331
BspLI GGNNCC 2 cut(s) 123, 580
BspPI GGATC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 326, 612
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 24, 184, 279
BssMI GATC 3 cut(s) 33, 103, 254
BssNAI GTATAC 1 cut(s) 301
BssT1I CCWWGG 2 cut(s) 24, 279
Bst1107I GTATAC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 252
Bst6I CTCTTC 2 cut(s) 209, 310
BstDEI CTNAG 3 cut(s) 198, 339, 461
BstF5I GGATG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 36, 106, 257
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 3 cut(s) 33, 103, 254
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 3 cut(s) 17, 428, 437
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 250, 514
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 2 cut(s) 103, 254
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 2 cut(s) 103, 254
BstZ17I GTATAC 1 cut(s) 301
BstZI CGGCCG 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 3 cut(s) 124, 519, 599
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 175, 248
CviAII CATG 4 cut(s) 448, 539, 559, 589
CviQI GTAC 2 cut(s) 175, 248
DdeI CTNAG 3 cut(s) 198, 339, 461
DpnI GATC 3 cut(s) 35, 105, 256
DpnII GATC 3 cut(s) 33, 103, 254
EaeI YGGCCR 2 cut(s) 517, 597
EagI CGGCCG 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 209, 310
EarI CTCTTC 2 cut(s) 209, 310
Ecl136II GAGCTC 1 cut(s) 202
EclXI CGGCCG 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 24, 279
Eco24I GRGCYC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 183, 468
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 24, 279
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 2 cut(s) 24, 279
FaeI CATG 4 cut(s) 451, 542, 562, 592
FaqI GGGAC 1 cut(s) 576
FatI CATG 4 cut(s) 447, 538, 558, 588
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 21, 520
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 21, 520
FspBI CTAG 2 cut(s) 107, 566
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 21, 520
HaeIII GGCC 3 cut(s) 124, 519, 599
HapII CCGG 1 cut(s) 516
HhaI GCGC 1 cut(s) 192
Hin1II CATG 4 cut(s) 451, 542, 562, 592
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 56, 70
HinfI GANTC 2 cut(s) 385, 632
HpaII CCGG 1 cut(s) 516
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 598, 646
HpyCH4IV ACGT 3 cut(s) 131, 483, 594
HpyCH4V TGCA 5 cut(s) 116, 145, 319, 404, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 428, 437
HpyF3I CTNAG 3 cut(s) 198, 339, 461
HpySE526I ACGT 3 cut(s) 131, 483, 594
Hsp92II CATG 4 cut(s) 451, 542, 562, 592
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 3 cut(s) 33, 103, 254
LguI GCTCTTC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 7
MaeI CTAG 2 cut(s) 107, 566
MaeII ACGT 3 cut(s) 131, 483, 594
MalI GATC 3 cut(s) 35, 105, 256
MboI GATC 3 cut(s) 33, 103, 254
MboII GAAGA 4 cut(s) 196, 281, 297, 632
MflI RGATCY 2 cut(s) 103, 254
MhlI GDGCHC 3 cut(s) 204, 469, 475
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 2 cut(s) 193, 397
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 1 cut(s) 626
Mox20I TGGCCA 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 599
MslI CAYNNNNRTG 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 599
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 2 cut(s) 252, 516
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 17, 428, 437
NciI CCSGG 1 cut(s) 516
NdeII GATC 3 cut(s) 33, 103, 254
NlaIII CATG 4 cut(s) 451, 542, 562, 592
NlaIV GGNNCC 2 cut(s) 123, 580
PaeR7I CTCGAG 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 2 cut(s) 22, 521
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 123, 580
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 468
PsuI RGATCY 2 cut(s) 103, 254
RsaI GTAC 2 cut(s) 176, 249
RsaNI GTAC 2 cut(s) 175, 248
RseI CAYNNNNRTG 1 cut(s) 593
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 2 cut(s) 21, 520
Sau3AI GATC 3 cut(s) 33, 103, 254
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 2 cut(s) 252, 516
SduI GDGCHC 3 cut(s) 204, 469, 475
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 2 cut(s) 193, 397
SsiI CCGC 1 cut(s) 520
SspMI CTAG 2 cut(s) 107, 566
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 250, 514
StyI CCWWGG 2 cut(s) 24, 279
TaiI ACGT 3 cut(s) 134, 486, 597
TaqI TCGA 5 cut(s) 51, 66, 94, 417, 469
TasI AATT 2 cut(s) 193, 397
TauI GCSGC 1 cut(s) 522
TfiI GAWTC 1 cut(s) 385
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 297, 377, 543
TspRI CASTG 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 681
XapI RAATTY 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 2 cut(s) 107, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.