Rroxscaffold_3G00274450

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000151
Physical Location & Seq
Reverse (-)
66108337 .. 66109365
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274450.1

Sequence Viewer

Length: 447 bp
ATGGTACTTATCTTTCCAGGCCGCCCCAATGGCTCCGCTAGTTCTCAAGCTTGGGCAAATATGAGCTTCCAAGTTTTGGGATCTTGCCTCATGGACTTGGTTAGAAAGGGAGTTATTAGCGAAGAGAAAGTAGATTCATTCAACATGCCTATATATTCCATGACTCCTCAAGAACTTGAAGATGCTGTGAAACAGAATGGAGGCTTTAGCGTAGAGATAATGGCAAACTTACCTCATCCCTTGGTAGATGACACTCTTTCAGTACCGCAACTACTTGCCTCTCACCTGAGAACTGGCGTGGAGGGGATGGTCAAGAAGCAATTTGGAGAAGAAATATTAGATGAGCTCTTCGATTTGTATCGGGAAAAATGTGAGCATGATGTGCTCAACTTTCTTGCTGTGCTTGGACACAACTTTATTGTTGTTCTTAGACGTAAGGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

148

Amino Acids

16.52

Weight (kDa)

5.03

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 145 1.8e-29 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AciI CCGC 3 cut(s) 22, 36, 266
AclWI GGATC 1 cut(s) 88
AfaI GTAC 2 cut(s) 6, 264
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 142, 179
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 50, 66, 346
AluI AGCT 3 cut(s) 50, 66, 346
Alw21I GWGCWC 2 cut(s) 348, 387
AlwI GGATC 1 cut(s) 88
AoxI GGCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 275
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 348, 387
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 30
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 172
BpuEI CTTGAG 2 cut(s) 30, 153
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 235, 312
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 348, 387
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 348, 387
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 3 cut(s) 22, 36, 266
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 117, 353
BstAPI GCANNNNNTGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 287, 428
BstF5I GGATG 2 cut(s) 235, 312
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 30, 382
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 235, 312
Csp6I GTAC 2 cut(s) 5, 263
CviAII CATG 4 cut(s) 91, 145, 160, 377
CviJI RGCY 6 cut(s) 21, 33, 50, 66, 204, 346
CviKI_1 RGCY 6 cut(s) 21, 33, 50, 66, 204, 346
CviQI GTAC 2 cut(s) 5, 263
DdeI CTNAG 2 cut(s) 287, 428
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 117, 353
EarI CTCTTC 2 cut(s) 117, 353
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 94, 148, 163, 380
FaiI YATR 7 cut(s) 62, 92, 146, 152, 154, 161, 378
FatI CATG 4 cut(s) 90, 144, 159, 376
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 222, 319
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 4 cut(s) 94, 148, 163, 380
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 2 cut(s) 134, 163
HphI GGTGA 1 cut(s) 275
Hpy188III TCNNGA 3 cut(s) 170, 313, 362
HpyCH4IV ACGT 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 382
HpyF3I CTNAG 2 cut(s) 287, 428
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 4 cut(s) 94, 148, 163, 380
Kzo9I GATC 1 cut(s) 80
LguI GCTCTTC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 3, 30, 279, 299
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 433
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 4 cut(s) 134, 191, 340, 341
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 348, 387
MluCI AATT 1 cut(s) 320
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 6 cut(s) 98, 177, 194, 243, 289, 295
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 30, 382
NdeII GATC 1 cut(s) 80
NlaIII CATG 4 cut(s) 94, 148, 163, 380
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 6, 264
RsaNI GTAC 2 cut(s) 5, 263
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 353
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 80
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 2 cut(s) 348, 387
SetI ASST 6 cut(s) 52, 68, 235, 288, 348, 436
SfaNI GCATC 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 45, 168
SmoI CTYRAG 2 cut(s) 45, 168
Sse9I AATT 1 cut(s) 320
SsiI CCGC 3 cut(s) 22, 36, 266
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 436
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 320
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 148
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.