pycom14g19380

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
20721777 .. 20722064
288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g19380.1

Sequence Viewer

Length: 288 bp
ATGACTCCCCAAGAACTGGAAGCTGCTGTAGAAAGAAATGAATATTTTAGTTTAAAGAAGTTGGAAACAGTACCTCACACTCCGATTCCTCCCACTGTCTCTCCAATCCAACTCGTTGTATCTCACGCGAGAGCTGCCTTTGAGGAAGTCATCAAGCAGCAATTCGGAGAAGAAATCTTAGATGAGCTCTTTGACTCGTATCTCAAGAAACTTGAAGAGCAACCCTCCATCATTGCGTCAGGGACTGAAACTGCAGTTATCTTTCTTGCCGTTCTTAAGCGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.72

Weight (kDa)

4.98

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 94 7.9e-12 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 128
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 16
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 3 cut(s) 23, 134, 187
AluI AGCT 3 cut(s) 23, 134, 187
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 103
AlwNI CAGNNNCTG 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 23, 134, 157
AspLEI GCGC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 10, 121, 169
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 103
BfmI CTRYAG 2 cut(s) 27, 252
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 3 cut(s) 24, 135, 158
BlsI GCNGC 3 cut(s) 25, 136, 159
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuEI CTTGAG 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 3 cut(s) 10, 121, 169
Bsh1236I CGCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 189
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 189
BspFNI CGCG 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 70, 97
Bst6I CTCTTC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSFI CTRYAG 2 cut(s) 27, 252
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 10, 121, 169
BtsIMutI CAGTG 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 282
CseI GACGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 3 cut(s) 23, 134, 187
CviKI_1 RGCY 3 cut(s) 23, 134, 187
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 178
DraI TTTAAA 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 189
FaqI GGGAC 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 24, 135, 158
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 24, 135, 158
GlaI GCGC 1 cut(s) 281
GluI GCNGC 3 cut(s) 24, 135, 158
HgaI GACGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 3 cut(s) 4, 85, 194
Hpy188I TCNGA 2 cut(s) 84, 167
Hpy188III TCNNGA 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 70, 97
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 178
HspAI GCGC 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 210
LpnPI CCDG 2 cut(s) 2, 225
Lsp1109I GCAGC 3 cut(s) 10, 121, 169
MboII GAAGA 2 cut(s) 182, 227
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 42, 133
MnlI CCTC 4 cut(s) 84, 99, 136, 235
MseI TTAA 2 cut(s) 53, 276
MspCI CTTAAG 1 cut(s) 275
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 3 cut(s) 25, 136, 159
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 53, 276
SatI GCNGC 3 cut(s) 24, 135, 158
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 25, 76, 136, 189
SfcI CTRYAG 2 cut(s) 27, 252
SmlI CTYRAG 2 cut(s) 203, 275
SmoI CTYRAG 2 cut(s) 203, 275
Sse9I AATT 1 cut(s) 161
SspI AATATT 1 cut(s) 44
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 2 cut(s) 70, 97
TasI AATT 1 cut(s) 161
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 53, 276
Tru9I TTAA 2 cut(s) 53, 276
TscAI CASTG 1 cut(s) 100
TseI GCWGC 3 cut(s) 23, 134, 157
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 16
Vha464I CTTAAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.