pycom15g22380

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
16481188 .. 16481547
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22380.1

Sequence Viewer

Length: 360 bp
ATGTATTTTGCCATAATGCAGGGAAAAGTTAGTGAAGAGAAAATTGATTCATTCAATATACCTATATATTTCATGTCTCCGGAAGAGGTGGAAGTTGCTGTAGACAGAAATGGAAACTTCAACATAGAGAGAATACAAATCTTACCAAATGTATTGACAAGTACTACTCTCTCTAATGCCTCAATATTTACATCTCACCTTAGAGCTGTCGTGGAAACACTCCTCAAGGAGCACTTTGGAGACGAAATGTTAGATGAGCTCTTCAACTTATATCACAAGAAAGTTGCAGAGCAACCCTCCAAGTTTGGATCGGGGAAGGCTATTATTTCTCTCTTTGTGCTTAAACGCAAGGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.6

Weight (kDa)

5.6

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 6 - 116 3.6e-24 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 79
AclWI GGATC 1 cut(s) 316
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 3 cut(s) 55, 121, 265
AluBI AGCT 2 cut(s) 206, 259
AluI AGCT 2 cut(s) 206, 259
Alw21I GWGCWC 2 cut(s) 234, 261
Alw26I GTCTC 2 cut(s) 81, 234
AlwI GGATC 1 cut(s) 316
Aor13HI TCCGGA 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 188
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 234, 261
BcoDI GTCTC 2 cut(s) 81, 234
BfmI CTRYAG 1 cut(s) 99
BmcAI AGTACT 1 cut(s) 163
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpuEI CTTGAG 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 234, 261
BsiSI CCGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 81, 234
BsmBI CGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 234, 261
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 1 cut(s) 308
BspEI TCCGGA 1 cut(s) 79
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 266
BssMI GATC 1 cut(s) 308
Bst6I CTCTTC 3 cut(s) 30, 78, 266
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 2 cut(s) 81, 234
BstMBI GATC 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 99
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 206, 259, 320
CviKI_1 RGCY 3 cut(s) 206, 259, 320
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
Eam1104I CTCTTC 3 cut(s) 30, 78, 266
EarI CTCTTC 3 cut(s) 30, 78, 266
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 1 cut(s) 76
FaiI YATR 7 cut(s) 14, 59, 65, 67, 74, 125, 271
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 261
HapII CCGG 1 cut(s) 80
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 19, 287
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 1 cut(s) 76
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 308
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 2 cut(s) 5, 93
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 3 cut(s) 47, 95, 253
MhlI GDGCHC 2 cut(s) 234, 261
MluCI AATT 2 cut(s) 42, 355
MnlI CCTC 4 cut(s) 79, 190, 233, 307
MroI TCCGGA 1 cut(s) 79
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 80
NdeII GATC 1 cut(s) 308
NlaIII CATG 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 261
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 1 cut(s) 308
ScaI AGTACT 1 cut(s) 163
SduI GDGCHC 2 cut(s) 234, 261
SetI ASST 5 cut(s) 64, 90, 201, 208, 261
SfcI CTRYAG 1 cut(s) 99
SgeI CNNG 9 cut(s) 32, 85, 92, 171, 223, 238, 289, 313, 324
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 42, 355
SspI AATATT 1 cut(s) 186
SstI GAGCTC 1 cut(s) 261
TasI AATT 2 cut(s) 42, 355
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 39, 61
XmiI GTMKAC 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.