RchiOBHm_Chr7g0179001

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Forward (+)
1475803 .. 1484112
8310 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15952

Sequence Viewer

Length: 990 bp
ATGTTAAAAGGAGTTTTGGATGTGGCCAAAGAACTTATAAGAAAGGCAATTGCAGAAAAGCTTGACATAGACATCTTGTCATCTTCCACCTCCTTCAAAATTGCAGACCTGGGTTGCTCTGTTGGACCCAATACATTTTTCGCAGTTGAAAACATAGTTGAAGCTGTGGAACTGATGTACCAAGGGCAAGGGATGAATTCTCAAATCCCTGAATTTCAAGTATTCTTTAATGATCATACCTCAAATGACTTTAACATGCTCTTCAAGTCCCTCCCTCAGAACAGGCGATACTATGCAGCTGGTGTGCCGGGTTCTTTCTATGCTCGGGTATTTCCTAATGCTTCCATCTACGTTGTTCACTCTTCTTTTGCCATTCAATGGCTTTCTAGAGTGCCAAAAGAGGTATTGGATAGAAACAGTCCTGCTTGGAATAAAGGACACATCTGTTACTCAAACTCCACAGATGAAGTAGTGAGGGCTTACAAAGCTCAATATGCCGAGGACATGGAATGCTTCCTGCATGCTAGGGCGCAAGAAATTGTGCATGGAGGACTGATGCTACTTACTCTTCCAGGCAGCCCCGATCACTCTACTCATTCTCATTCTCTTGTGAGCTTGGAACTTCTTGGATCTTGCCTCATGGACTTGGTTAGAAAGGGAGTTGTTAGCGAAGAGAAGGTGGATTCATTTAACATGCCTATGTATTCCATGTCACCTCAAGAACTTGAAGTTGCTGTCAAACGAAATGGATGCTTTAGCATAGACATAATGGCAGAGTTACCTCGTCCCTTGGTACACGACACTCTTTCAATATCCCAAATGATTGCTTCTCACATAAGAGCTGGTATGGAGGAGATGATAAAGAAGCAATTTGGAGAAGAAATCTTAGATGAGCTTTTCGACTTGTACCGACAAAAATGTGAACAATCGGTAATTAACACTCTGGTTGGACACACCTTTCTTGTTGTTCTTAGACGTAAAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

329

Amino Acids

37.02

Weight (kDa)

5.68

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 21 - 325 3.4e-104 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 378
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 2 cut(s) 196, 212
AfaI GTAC 3 cut(s) 179, 795, 908
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 8 cut(s) 97, 149, 161, 218, 265, 377, 728, 810
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 2 cut(s) 108, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 7 cut(s) 61, 164, 299, 488, 615, 842, 895
AluI AGCT 7 cut(s) 61, 164, 299, 488, 615, 842, 895
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 296, 576
ApoI RAATTY 2 cut(s) 196, 212
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 705
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 161, 194
BalI TGGCCA 1 cut(s) 26
BbvI GCAGC 2 cut(s) 308, 588
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 732, 766
BciT130I CCWGG 2 cut(s) 110, 573
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 309
BfaI CTAG 2 cut(s) 387, 525
BisI GCNGC 2 cut(s) 297, 577
BlsI GCNGC 2 cut(s) 298, 578
Bme1390I CCNGG 3 cut(s) 110, 309, 573
Bme18I GGWCC 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 3 cut(s) 110, 309, 573
BmsI GCATC 2 cut(s) 546, 740
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 109, 181, 498, 789
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 110, 573
BseDI CCNNGG 4 cut(s) 109, 181, 498, 789
BseGI GGATG 3 cut(s) 25, 198, 755
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 2 cut(s) 308, 588
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 2 cut(s) 253, 771
BslI CCNNNNNNNGG 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 253, 771
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 324
Bsp143I GATC 3 cut(s) 232, 583, 629
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 109, 181, 498, 789
BssMI GATC 3 cut(s) 232, 583, 629
BssT1I CCWWGG 2 cut(s) 181, 789
Bst2UI CCWGG 2 cut(s) 110, 573
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 4 cut(s) 266, 367, 573, 666
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 3 cut(s) 276, 886, 971
BstF5I GGATG 3 cut(s) 25, 198, 755
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 3 cut(s) 235, 586, 632
BstMBI GATC 3 cut(s) 232, 583, 629
BstMWI GCNNNNNNNGC 2 cut(s) 485, 494
BstNI CCWGG 2 cut(s) 110, 573
BstNSI RCATGY 3 cut(s) 259, 524, 697
BstSCI CCNGG 3 cut(s) 108, 307, 571
BstV1I GCAGC 2 cut(s) 308, 588
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 3 cut(s) 25, 198, 755
Cac8I GCNNGC 1 cut(s) 522
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 178, 794, 907
CviAII CATG 7 cut(s) 256, 505, 521, 545, 640, 694, 709
CviQI GTAC 3 cut(s) 178, 794, 907
DdeI CTNAG 3 cut(s) 276, 886, 971
DpnI GATC 3 cut(s) 234, 585, 631
DpnII GATC 3 cut(s) 232, 583, 629
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 4 cut(s) 266, 367, 573, 666
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 4 cut(s) 266, 367, 573, 666
Eco130I CCWWGG 2 cut(s) 181, 789
Eco47I GGWCC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 108, 571
EcoT14I CCWWGG 2 cut(s) 181, 789
ErhI CCWWGG 2 cut(s) 181, 789
FaeI CATG 7 cut(s) 259, 508, 524, 548, 643, 697, 712
FaqI GGGAC 2 cut(s) 253, 771
FatI CATG 7 cut(s) 255, 504, 520, 544, 639, 693, 708
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 297, 577
FokI GGATG 3 cut(s) 32, 205, 762
Fsp4HI GCNGC 2 cut(s) 297, 577
FspBI CTAG 2 cut(s) 387, 525
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 297, 577
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 308
HhaI GCGC 1 cut(s) 532
Hin1II CATG 7 cut(s) 259, 508, 524, 548, 643, 697, 712
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 1 cut(s) 683
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 705
Hpy166II GTNNAC 3 cut(s) 358, 796, 923
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 2 cut(s) 387, 719
Hpy8I GTNNAC 3 cut(s) 358, 796, 923
HpyAV CCTTC 2 cut(s) 103, 670
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 2 cut(s) 351, 976
HpyCH4V TGCA 5 cut(s) 53, 104, 296, 520, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 494
HpyF3I CTNAG 3 cut(s) 276, 886, 971
HpySE526I ACGT 2 cut(s) 351, 976
Hsp92II CATG 7 cut(s) 259, 508, 524, 548, 643, 697, 712
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 232, 583, 629
LguI GCTCTTC 1 cut(s) 266
Lsp1109I GCAGC 2 cut(s) 308, 588
LweI GCATC 2 cut(s) 546, 740
MaeI CTAG 2 cut(s) 387, 525
MaeII ACGT 2 cut(s) 351, 976
MaeIII GTNAC 3 cut(s) 446, 711, 777
MalI GATC 3 cut(s) 234, 585, 631
MboI GATC 3 cut(s) 232, 583, 629
MboII GAAGA 6 cut(s) 75, 253, 354, 560, 683, 890
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 629
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 7 cut(s) 48, 99, 196, 212, 537, 869, 933
MluNI TGGCCA 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 103, 928
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 5 cut(s) 5, 228, 252, 690, 936
MslI CAYNNNNRTG 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 3 cut(s) 110, 309, 573
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 2 cut(s) 110, 573
MwoI GCNNNNNNNGC 2 cut(s) 485, 494
NciI CCSGG 1 cut(s) 309
NdeII GATC 3 cut(s) 232, 583, 629
NlaIII CATG 7 cut(s) 259, 508, 524, 548, 643, 697, 712
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 711
NspI RCATGY 3 cut(s) 259, 524, 697
PaeI GCATGC 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 683
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 2 cut(s) 298, 578
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 108, 571
PspGI CCWGG 2 cut(s) 108, 571
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 125
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PsuI RGATCY 1 cut(s) 629
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 3 cut(s) 179, 795, 908
RsaNI GTAC 3 cut(s) 178, 794, 907
RseI CAYNNNNRTG 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 5 cut(s) 5, 228, 252, 690, 936
SatI GCNGC 2 cut(s) 297, 577
Sau3AI GATC 3 cut(s) 232, 583, 629
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 3 cut(s) 110, 309, 573
SfaNI GCATC 2 cut(s) 546, 740
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
SphI GCATGC 1 cut(s) 524
Sse9I AATT 7 cut(s) 48, 99, 196, 212, 537, 869, 933
SspMI CTAG 2 cut(s) 387, 525
StyD4I CCNGG 3 cut(s) 108, 307, 571
StyI CCWWGG 2 cut(s) 181, 789
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 2 cut(s) 354, 979
TaqI TCGA 1 cut(s) 900
TasI AATT 7 cut(s) 48, 99, 196, 212, 537, 869, 933
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 5 cut(s) 5, 228, 252, 690, 936
Tru9I TTAA 5 cut(s) 5, 228, 252, 690, 936
TseFI GTSAC 1 cut(s) 711
TseI GCWGC 2 cut(s) 296, 576
Tsp45I GTSAC 1 cut(s) 711
TspDTI ATGAA 3 cut(s) 209, 480, 675
Van91I CCANNNNNTGG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 196, 212
XbaI TCTAGA 1 cut(s) 386
XceI RCATGY 3 cut(s) 259, 524, 697
XspI CTAG 2 cut(s) 387, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.