Rorug02G0337300

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
41914488 .. 41918138
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0337300.1

Sequence Viewer

Length: 462 bp
ATGGCGAATAGCAATCTCCCTCGACGAATTATCAAGGAGACGCAGAGGCTTCTCAGCGAACCAGCTCCGGGAATTAGTGCTTCTCCTTCTGAAGAAAACATGCGGTATTTCAATGTAATGATTCTTGGTCCAGCTCAGTCTCCTTATGAAGGTGGAGTTTTCAAGTTGGAGTTGTTTTTGCCTGAAGAATATCCAATGGCACCTCCCAAGGTCCGCTTCCTGACCAAAATATACCATCCTAACATTGATAAGCTTGGTAGGATATGCCTTGATATTCTGAAAGACAAATGGAGCCCAGCCCTCCAAATCCGAACAGTATTGCTGAGCATCCAAGCACTTCTGAGTGCTCCAAACCCTGATGACCCACTTTCCGAGAACATTGCAAAGCACTGGAAGTCAAATGAAACAGAAGCTGTTGACACAGCCAAGGAGTGGACCCGCATATACGCCAGTGGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.29

Weight (kDa)

6.16

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 145 2.8e-51 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 432
AciI CCGC 3 cut(s) 103, 214, 439
AcuI CTGAAG 2 cut(s) 111, 204
AfiI CCNNNNNNNGG 3 cut(s) 68, 149, 432
AgsI TTSAA 2 cut(s) 112, 163
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 65, 134, 253, 413
AluI AGCT 4 cut(s) 65, 134, 253, 413
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 32, 144
AlwNI CAGNNNCTG 1 cut(s) 413
AspS9I GGNCC 3 cut(s) 128, 211, 435
AsuC2I CCSGG 1 cut(s) 69
AvaII GGWCC 3 cut(s) 128, 211, 435
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 349
BccI CCATC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 32, 144
BlpI GCTNAGC 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 3 cut(s) 128, 211, 435
BmgT120I GGNCC 3 cut(s) 128, 211, 435
BmiI GGNNCC 3 cut(s) 201, 293, 437
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 207, 426
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 149, 432
Bse1I ACTGG 2 cut(s) 395, 450
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 207, 426
BseGI GGATG 2 cut(s) 235, 327
BseLI CCNNNNNNNGG 3 cut(s) 68, 149, 432
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 4 cut(s) 67, 149, 314, 332
BseNI ACTGG 2 cut(s) 395, 450
BseYI CCCAGC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 68, 149, 432
BsmAI GTCTC 2 cut(s) 32, 144
BsmBI CGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 296, 349
Bsp1720I GCTNAGC 1 cut(s) 323
BspACI CCGC 3 cut(s) 103, 214, 439
BspCNI CTCAG 4 cut(s) 66, 148, 315, 333
BspLI GGNNCC 3 cut(s) 201, 293, 437
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 2 cut(s) 395, 450
BssECI CCNNGG 2 cut(s) 207, 426
BssT1I CCWWGG 2 cut(s) 207, 426
Bst4CI ACNGT 1 cut(s) 316
BstDEI CTNAG 4 cut(s) 53, 135, 323, 341
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 235, 327
BstMAI GTCTC 2 cut(s) 32, 144
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 235, 327
BtsIMutI CAGTG 2 cut(s) 388, 457
CaiI CAGNNNCTG 1 cut(s) 413
Cfr13I GGNCC 3 cut(s) 128, 211, 435
CseI GACGC 1 cut(s) 49
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 49, 65, 134, 253, 294, 299, 413, 425
CviKI_1 RGCY 8 cut(s) 49, 65, 134, 253, 294, 299, 413, 425
DdeI CTNAG 4 cut(s) 53, 135, 323, 341
Eco130I CCWWGG 2 cut(s) 207, 426
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 3 cut(s) 128, 211, 435
Eco57I CTGAAG 2 cut(s) 111, 204
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 207, 426
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 207, 426
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 103
FaiI YATR 6 cut(s) 101, 147, 232, 265, 443, 445
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 446
FokI GGATG 2 cut(s) 222, 314
FriOI GRGCYC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 299
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 418, 435
Hpy188I TCNGA 5 cut(s) 91, 279, 311, 342, 373
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 418, 435
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 96, 143
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 383
HpyF3I CTNAG 4 cut(s) 53, 135, 323, 341
Hsp92II CATG 1 cut(s) 103
LmnI GCTCC 3 cut(s) 70, 291, 352
LpnPI CCDG 8 cut(s) 75, 81, 144, 195, 233, 309, 369, 376
LweI GCATC 1 cut(s) 336
MboII GAAGA 2 cut(s) 104, 197
MhlI GDGCHC 2 cut(s) 296, 349
MluCI AATT 2 cut(s) 27, 72
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 30, 39, 213, 311
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 69
NciI CCSGG 1 cut(s) 69
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 201, 293, 437
NspI RCATGY 1 cut(s) 103
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 432
PfoI TCCNGGA 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 201, 293, 437
PspPI GGNCC 3 cut(s) 128, 211, 435
PstNI CAGNNNCTG 1 cut(s) 413
Sau96I GGNCC 3 cut(s) 128, 211, 435
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 296, 349
SetI ASST 7 cut(s) 67, 136, 154, 205, 213, 255, 415
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 3 cut(s) 128, 211, 435
Sse9I AATT 2 cut(s) 27, 72
SsiI CCGC 3 cut(s) 103, 214, 439
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 207, 426
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 27, 72
TfiI GAWTC 1 cut(s) 121
TscAI CASTG 2 cut(s) 395, 457
TspDTI ATGAA 2 cut(s) 162, 417
TspRI CASTG 2 cut(s) 395, 457
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 3 cut(s) 128, 211, 435
XagI CCTNNNNNAGG 1 cut(s) 147
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.