Prupe.5G228400_v2.0.a1

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000151
Physical Location & Seq
Reverse (-)
17525442 .. 17527231
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G228400.1

Sequence Viewer

Length: 1059 bp
ATGGCAGATTTGGTGGCATATTCTATGAACGGTGGACATGGCCTCTACAGCTACAGCAAAAACTCTACTTTTCAGAGAAAAGCTATAGATGCTGGCAAGGAACTGATCAAAGAAGCAATTTCTGAAAAGCTTGATATCAAAAGCTTCTCTTCTTCAAACACCTTTCGAGTTACAGATTTAGGCTGCGCTGTAGGGCCTAACACATTCCATGCAGTGCAAAACATAGTGGACGCTGTGGAGCAAAAGTATCAAAGCCAAGGACACAATTCTCAACTCCCTGAGTTCCAAGTTTTTTTCAGTGATCACATCTCCAATGATTTCAATGCGCTCTTCCAATCTCTGCCTCCAGACAGGCGTTACTACGCCACGGGTGTTCCCGGCTCTTTTTATTCTCGTTTATTTCCCAAGGCCTTTCTTCACTTTGCTTACTCTTCATATGCTCTCCAATGTCTCTCTAAAGTGCCAGAAGAAGTGGTGGACATGAACTCTCCTGCTTGGAACAAAGGGAGGATTCATTACTCGAAGTCTGCAGACCAAGTTGTGAAGGCATACACAACTCAGTATGCCAAGGACATGGAGTGCTTTCTAAACGCTAGAGCCCAAGAGATTGTGTGTGGAGGATTGATGGCCTTTGTTGTCCCAGGCCGCCCCAATGGAATCCCTCATACAGAAGTTTTCGTCAATACAGCGAAAGAACTCTTTGGATCCTGCCTCATGGACATGGCCAAGAAGGGTATCATCTCTGAAGAAAAAGTGGACTGCTTTAATATACCACAATATATCGCTTCTCTGGAAGAAGTAGAAGCGATTGTGAAAGCGAATGGATATTTCAGCGTAGAAATGATGGAAAACTTGACACAGGAAAAACCACCTCCTAAGGTGTTTGCCATTGGTGTGAGATCCGGAATGGAGGGAATGATTCGGAAGCATTTCGGAGATGAGATTATGGATGAGCTTTTTGATTCATTTGGCAAGAAACTTGAAGAATCCTCCTCCGTCCTCGAATCAAAGAAATCAGTTAGCTTGTTTGTTTTACTCAAACGCAGAGCAACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

353

Amino Acids

39.36

Weight (kDa)

6.11

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 902
AciI CCGC 1 cut(s) 646
AclWI GGATC 3 cut(s) 699, 712, 894
AcoI YGGCCR 1 cut(s) 723
AcuI CTGAAG 1 cut(s) 765
AgsI TTSAA 3 cut(s) 156, 322, 983
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 6 cut(s) 51, 83, 130, 144, 955, 1023
AluI AGCT 6 cut(s) 51, 83, 130, 144, 955, 1023
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 3 cut(s) 699, 712, 894
Aor13HI TCCGGA 1 cut(s) 902
AoxI GGCC 6 cut(s) 40, 194, 408, 627, 643, 723
ApeKI GCWGC 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 929
AspLEI GCGC 2 cut(s) 188, 328
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 378
AxyI CCTNAGG 1 cut(s) 876
BalI TGGCCA 1 cut(s) 725
BamHI GGATCC 1 cut(s) 704
BanII GRGCYC 1 cut(s) 601
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 619, 838
BciT130I CCWGG 1 cut(s) 642
BclI TGATCA 2 cut(s) 105, 301
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 5 cut(s) 46, 52, 84, 189, 528
BisI GCNGC 2 cut(s) 184, 646
BlsI GCNGC 2 cut(s) 185, 647
Bme1390I CCNGG 2 cut(s) 378, 642
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 2 cut(s) 378, 642
BmsI GCATC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 5 cut(s) 256, 366, 405, 567, 640
BsaWI WCCGGW 1 cut(s) 902
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bse21I CCTNAGG 1 cut(s) 876
BseAI TCCGGA 1 cut(s) 902
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 5 cut(s) 256, 366, 405, 567, 640
BseGI GGATG 1 cut(s) 955
BseMII CTCAG 3 cut(s) 270, 572, 1044
BseRI GAGGAG 1 cut(s) 982
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 6 cut(s) 42, 196, 410, 629, 645, 725
BsiSI CCGG 2 cut(s) 378, 903
BslFI GGGAC 1 cut(s) 623
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 623
BsnI GGCC 6 cut(s) 42, 196, 410, 629, 645, 725
Bsp1286I GDGCHC 1 cut(s) 601
Bsp13I TCCGGA 1 cut(s) 902
Bsp143I GATC 4 cut(s) 105, 301, 704, 899
BspACI CCGC 1 cut(s) 646
BspANI GGCC 6 cut(s) 42, 196, 410, 629, 645, 725
BspCNI CTCAG 3 cut(s) 271, 571, 1045
BspEI TCCGGA 1 cut(s) 902
BspLI GGNNCC 1 cut(s) 706
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 3 cut(s) 699, 712, 894
BspQI GCTCTTC 1 cut(s) 335
BssECI CCNNGG 5 cut(s) 256, 366, 405, 567, 640
BssMI GATC 4 cut(s) 105, 301, 704, 899
BssT1I CCWWGG 3 cut(s) 256, 405, 567
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 154, 335, 436
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 4 cut(s) 279, 558, 876, 1053
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 955
BstHHI GCGC 2 cut(s) 188, 328
BstKTI GATC 4 cut(s) 108, 304, 707, 902
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 4 cut(s) 105, 301, 704, 899
BstMWI GCNNNNNNNGC 2 cut(s) 48, 89
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 2 cut(s) 376, 640
BstSFI CTRYAG 5 cut(s) 46, 52, 84, 189, 528
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 2 cut(s) 704, 899
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 2 cut(s) 704, 899
Bsu36I CCTNAGG 1 cut(s) 876
BsuRI GGCC 6 cut(s) 42, 196, 410, 629, 645, 725
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 955
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 304
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 2 cut(s) 188, 328
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 239
CviAII CATG 6 cut(s) 38, 209, 481, 574, 715, 721
DdeI CTNAG 4 cut(s) 279, 558, 876, 1053
DpnI GATC 4 cut(s) 107, 303, 706, 901
DpnII GATC 4 cut(s) 105, 301, 704, 899
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 3 cut(s) 154, 335, 436
EarI CTCTTC 3 cut(s) 154, 335, 436
Eco130I CCWWGG 3 cut(s) 256, 405, 567
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 765
Eco81I CCTNAGG 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 3 cut(s) 256, 405, 567
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 3 cut(s) 256, 405, 567
FaeI CATG 6 cut(s) 41, 212, 484, 577, 718, 724
FalI AAGNNNNNCTT 2 cut(s) 133, 165
FaqI GGGAC 1 cut(s) 623
FatI CATG 6 cut(s) 37, 208, 480, 573, 714, 720
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 2 cut(s) 105, 301
Fnu4HI GCNGC 2 cut(s) 184, 646
FokI GGATG 1 cut(s) 962
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 2 cut(s) 184, 646
FspBI CTAG 1 cut(s) 594
GlaI GCGC 2 cut(s) 187, 327
GluI GCNGC 2 cut(s) 184, 646
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 6 cut(s) 42, 196, 410, 629, 645, 725
HapII CCGG 2 cut(s) 378, 903
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 188, 328
Hin1II CATG 6 cut(s) 41, 212, 484, 577, 718, 724
Hin6I GCGC 2 cut(s) 186, 326
HinP1I GCGC 2 cut(s) 186, 326
HindIII AAGCTT 2 cut(s) 128, 142
HinfI GANTC 6 cut(s) 511, 657, 919, 962, 986, 1004
HpaII CCGG 2 cut(s) 378, 903
Hpy166II GTNNAC 4 cut(s) 35, 229, 478, 757
Hpy188I TCNGA 5 cut(s) 75, 124, 745, 924, 935
Hpy188III TCNNGA 3 cut(s) 347, 791, 903
Hpy8I GTNNAC 4 cut(s) 35, 229, 478, 757
HpyAV CCTTC 2 cut(s) 538, 724
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 212, 217, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 89
HpyF3I CTNAG 4 cut(s) 279, 558, 876, 1053
Hsp92II CATG 6 cut(s) 41, 212, 484, 577, 718, 724
HspAI GCGC 2 cut(s) 186, 326
Kpn2I TCCGGA 1 cut(s) 902
Ksp22I TGATCA 2 cut(s) 105, 301
Kzo9I GATC 4 cut(s) 105, 301, 704, 899
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 169, 356
MalI GATC 4 cut(s) 107, 303, 706, 901
MboI GATC 4 cut(s) 105, 301, 704, 899
MboII GAAGA 9 cut(s) 141, 144, 322, 407, 423, 479, 758, 806, 995
MflI RGATCY 2 cut(s) 704, 899
MhlI GDGCHC 1 cut(s) 601
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 2 cut(s) 117, 265
MluNI TGGCCA 1 cut(s) 725
Mox20I TGGCCA 1 cut(s) 725
MroI TCCGGA 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 929
MscI TGGCCA 1 cut(s) 725
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 2 cut(s) 719, 893
Msp20I TGGCCA 1 cut(s) 725
MspI CCGG 2 cut(s) 378, 903
MspR9I CCNGG 2 cut(s) 378, 642
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 2 cut(s) 48, 89
NciI CCSGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 105, 301, 704, 899
NlaIII CATG 6 cut(s) 41, 212, 484, 577, 718, 724
NlaIV GGNNCC 1 cut(s) 706
PceI AGGCCT 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 6 cut(s) 511, 657, 919, 962, 986, 1004
PkrI GCNGC 2 cut(s) 185, 647
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 2 cut(s) 704, 899
RseI CAYNNNNRTG 2 cut(s) 719, 893
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 2 cut(s) 184, 646
Sau3AI GATC 4 cut(s) 105, 301, 704, 899
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 378, 642
SduI GDGCHC 1 cut(s) 601
SetI ASST 9 cut(s) 53, 85, 132, 146, 164, 874, 882, 957, 1025
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 5 cut(s) 46, 52, 84, 189, 528
SmiMI CAYNNNNRTG 2 cut(s) 719, 893
Sse9I AATT 2 cut(s) 117, 265
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 1 cut(s) 646
SspMI CTAG 1 cut(s) 594
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 376, 640
StyI CCWWGG 3 cut(s) 256, 405, 567
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 166, 521, 1002
TasI AATT 2 cut(s) 117, 265
TauI GCSGC 1 cut(s) 648
TfiI GAWTC 6 cut(s) 511, 657, 919, 962, 986, 1004
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 2 cut(s) 219, 304
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 5 cut(s) 41, 423, 497, 503, 954
TspGWI ACGGA 1 cut(s) 985
TspRI CASTG 2 cut(s) 219, 304
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.