Rorug01G0064800

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000151
Physical Location & Seq
Reverse (-)
10522753 .. 10523484
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0064800.1

Sequence Viewer

Length: 732 bp
ATGCCAAAGACTGCAAACCCGGGGAGGAGACATGCCACCTTGCTCAAGAAGGCCAATGAGTTATCTATTCTATGTGATGCAGAGGTCGCCGTCATCGCTTTTTCACCTGATGGAGAACTCCATGAATACTCGAGCACAAGCATGGAACACACTCTTGAAAGATACAAGAACAGGACTGGCCTCGTCCTCCCAAGCAGGGTCGAGTCTCCGGCGCCAGAAGAGCACCGCCATGAACCTGCAAAGCAGGAACTGCAGGAAAGACATAAAGCACTACGATTGGAGAAATTGCGGAGAATGGGAAAGGAGTTGGATGGCCTGAGTTCGGAAGCGCTGTCTACGCTTTTGGAACAACAAACTAAAGGGTTATTAGCTGTTCAGAGCAAGAAAGTGGAACTGCTTGAGGAGAAGTTGCAGATATCTAGGTCGAGAGAAGAGCAGGCTATGCATGAGAATGAACTGCTTGAGGAGAAGTTGCTGAGATCTAGATCAAGAGAAGAGCAGACTATGCACGAGAATGAGAGTCTGCGCAGAAGGATCAGGGGGTTCATGATGAGGCAAAACTACAAGCGACACATCCTTCCATGCCATCCAGCCAATTATTTGGATAGAAATTATGGAAATAGGATGGGTTTCTGCACAAGCTCAAGAGCTGCTGTTTCTGTTTCCAACTATCCATCGGAGGGAACCGATGACCATTTAGACATGACCACTTTGCGGTTGTGGCCGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

243

Amino Acids

28.11

Weight (kDa)

8.39

Isoelectric Point (pI)

82.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 9 - 43 4.2e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 335
AciI CCGC 3 cut(s) 226, 289, 715
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 4 cut(s) 196, 322, 680, 714
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 3 cut(s) 371, 642, 650
AluI AGCT 3 cut(s) 371, 642, 650
Alw21I GWGCWC 2 cut(s) 137, 225
Alw26I GTCTC 2 cut(s) 22, 210
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 2 cut(s) 19, 130
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 4 cut(s) 51, 178, 313, 722
ApeKI GCWGC 1 cut(s) 650
AspLEI GCGC 3 cut(s) 214, 331, 528
AsuC2I CCSGG 2 cut(s) 20, 21
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 2 cut(s) 19, 130
BanI GGYRCC 1 cut(s) 211
BauI CACGAG 1 cut(s) 509
Bbv12I GWGCWC 2 cut(s) 137, 225
BbvI GCAGC 1 cut(s) 637
BccI CCATC 5 cut(s) 104, 305, 594, 619, 682
BceAI ACGGC 2 cut(s) 74, 709
BcnI CCSGG 2 cut(s) 20, 21
BcoDI GTCTC 2 cut(s) 22, 210
BfaI CTAG 2 cut(s) 420, 483
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 2 cut(s) 215, 332
BfuAI ACCTGC 1 cut(s) 244
BglII AGATCT 1 cut(s) 479
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
Bme1390I CCNGG 2 cut(s) 20, 21
BmeT110I CYCGRG 2 cut(s) 19, 130
BmiI GGNNCC 2 cut(s) 213, 685
BmrFI CCNGG 2 cut(s) 20, 21
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 4 cut(s) 29, 419, 482, 628
BpuMI CCSGG 2 cut(s) 20, 21
BsaBI GATNNNNATC 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 19, 20
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 322, 680, 714
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 19, 20
BseGI GGATG 4 cut(s) 316, 573, 586, 630
BseJI GATNNNNATC 1 cut(s) 484
BseLI CCNNNNNNNGG 4 cut(s) 196, 322, 680, 714
BseMII CTCAG 2 cut(s) 308, 467
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 3 cut(s) 40, 416, 479
BseXI GCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 619
BshFI GGCC 4 cut(s) 53, 180, 315, 724
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 137, 225
BsiHKCI CYCGRG 2 cut(s) 19, 130
BsiSI CCGG 2 cut(s) 20, 209
BslI CCNNNNNNNGG 4 cut(s) 196, 322, 680, 714
BsmAI GTCTC 2 cut(s) 22, 210
BsnI GGCC 4 cut(s) 53, 180, 315, 724
BsoBI CYCGRG 2 cut(s) 19, 130
Bsp1286I GDGCHC 2 cut(s) 137, 225
Bsp143I GATC 3 cut(s) 479, 485, 534
BspACI CCGC 3 cut(s) 226, 289, 715
BspANI GGCC 4 cut(s) 53, 180, 315, 724
BspCNI CTCAG 2 cut(s) 309, 468
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 213, 685
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 3 cut(s) 213, 426, 489
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 19, 20
BssMI GATC 3 cut(s) 479, 485, 534
BssNI GRCGYC 1 cut(s) 212
BssSI CACGAG 1 cut(s) 509
Bst2BI CACGAG 1 cut(s) 509
Bst6I CTCTTC 3 cut(s) 213, 426, 489
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 3 cut(s) 250, 442, 505
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 317, 476
BstF5I GGATG 4 cut(s) 316, 573, 586, 630
BstH2I RGCGCY 2 cut(s) 215, 332
BstHHI GCGC 3 cut(s) 214, 331, 528
BstKTI GATC 3 cut(s) 482, 488, 537
BstMAI GTCTC 2 cut(s) 22, 210
BstMBI GATC 3 cut(s) 479, 485, 534
BstMWI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 18, 19
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 479
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 1 cut(s) 479
BsuRI GGCC 4 cut(s) 53, 180, 315, 724
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 4 cut(s) 316, 573, 586, 630
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 546
CfoI GCGC 3 cut(s) 214, 331, 528
Cfr9I CCCGGG 1 cut(s) 19
CviAII CATG 8 cut(s) 32, 122, 142, 230, 446, 547, 582, 703
CviJI RGCY 9 cut(s) 53, 180, 315, 371, 440, 593, 642, 650, 724
CviKI_1 RGCY 9 cut(s) 53, 180, 315, 371, 440, 593, 642, 650, 724
DdeI CTNAG 2 cut(s) 317, 476
DinI GGCGCC 1 cut(s) 213
DpnI GATC 3 cut(s) 481, 487, 536
DpnII GATC 3 cut(s) 479, 485, 534
EaeI YGGCCR 1 cut(s) 722
Eam1104I CTCTTC 3 cut(s) 213, 426, 489
EarI CTCTTC 3 cut(s) 213, 426, 489
Eco32I GATATC 1 cut(s) 417
Eco47III AGCGCT 1 cut(s) 330
Eco88I CYCGRG 2 cut(s) 19, 130
EcoRV GATATC 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 447
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
FatI CATG 8 cut(s) 31, 121, 141, 229, 445, 546, 581, 702
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 4 cut(s) 323, 560, 573, 637
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 2 cut(s) 420, 483
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 3 cut(s) 213, 330, 527
GluI GCNGC 1 cut(s) 651
HaeII RGCGCY 2 cut(s) 215, 332
HaeIII GGCC 4 cut(s) 53, 180, 315, 724
HapII CCGG 2 cut(s) 20, 209
HhaI GCGC 3 cut(s) 214, 331, 528
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
Hin6I GCGC 3 cut(s) 212, 329, 526
HinP1I GCGC 3 cut(s) 212, 329, 526
HinfI GANTC 2 cut(s) 203, 520
HpaII CCGG 2 cut(s) 20, 209
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 325, 378, 679
Hpy188III TCNNGA 7 cut(s) 46, 155, 426, 483, 489, 547, 645
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 43, 525, 587
HpyCH4V TGCA 8 cut(s) 14, 80, 239, 253, 412, 445, 508, 636
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
HpyF3I CTNAG 2 cut(s) 317, 476
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
HspAI GCGC 3 cut(s) 212, 329, 526
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 479, 485, 534
LguI GCTCTTC 3 cut(s) 213, 426, 489
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 420, 483
MalI GATC 3 cut(s) 481, 487, 536
MboI GATC 3 cut(s) 479, 485, 534
MboII GAAGA 3 cut(s) 230, 443, 506
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 2 cut(s) 137, 225
MluCI AATT 3 cut(s) 284, 595, 610
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 2 cut(s) 212, 529
MmeI TCCRAC 2 cut(s) 288, 690
MnlI CCTC 8 cut(s) 18, 76, 191, 197, 394, 457, 546, 673
Mph1103I ATGCAT 1 cut(s) 447
MslI CAYNNNNRTG 4 cut(s) 140, 228, 450, 513
MspI CCGG 2 cut(s) 20, 209
MspR9I CCNGG 2 cut(s) 20, 21
MwoI GCNNNNNNNGC 8 cut(s) 86, 95, 220, 250, 337, 442, 505, 721
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 20, 21
NdeII GATC 3 cut(s) 479, 485, 534
NlaIII CATG 8 cut(s) 35, 125, 145, 233, 449, 550, 585, 706
NlaIV GGNNCC 2 cut(s) 213, 685
NsbI TGCGCA 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 130
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 3 cut(s) 213, 426, 489
PkrI GCNGC 1 cut(s) 652
PleI GAGTC 2 cut(s) 211, 528
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 2 cut(s) 211, 528
PspN4I GGNNCC 2 cut(s) 213, 685
PspXI VCTCGAGB 1 cut(s) 130
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 479
RseI CAYNNNNRTG 4 cut(s) 140, 228, 450, 513
SapI GCTCTTC 3 cut(s) 213, 426, 489
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 3 cut(s) 479, 485, 534
SchI GAGTC 2 cut(s) 212, 529
ScrFI CCNGG 2 cut(s) 20, 21
SduI GDGCHC 2 cut(s) 137, 225
SetI ASST 8 cut(s) 41, 87, 109, 238, 373, 425, 644, 652
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmaI CCCGGG 1 cut(s) 21
SmiMI CAYNNNNRTG 4 cut(s) 140, 228, 450, 513
SmlI CTYRAG 5 cut(s) 44, 130, 398, 461, 643
SmoI CTYRAG 5 cut(s) 44, 130, 398, 461, 643
Sse9I AATT 3 cut(s) 284, 595, 610
SsiI CCGC 3 cut(s) 226, 289, 715
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 2 cut(s) 420, 483
StyD4I CCNGG 2 cut(s) 18, 19
TaqI TCGA 3 cut(s) 131, 201, 425
TasI AATT 3 cut(s) 284, 595, 610
TseI GCWGC 1 cut(s) 650
TspDTI ATGAA 4 cut(s) 138, 246, 468, 535
TspMI CCCGGG 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 2 cut(s) 420, 483
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.