Rorug02G0279500

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
30177648 .. 30178705
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0279500.1

Sequence Viewer

Length: 903 bp
ATGGTTCAGCTTCAGCTCTCTCTCCTTTTTGTTGCCGGATTTGCATTCATCTTCCAACAAGTCTATGGAGGGAAGGTGATGATGGAGTACATTGGAGCCACTGGTGTTTCGGTATCATTTGACGATGTACCAATTAATGATGGAATCGACTTTCATTTCATACTTGGCTTTGCTATTGATGCAGATGAAGCAGGCAACTTCCAAAACGGAAAATTTTCACCATATTGGATACCTGAATTAACCCCAATGTCTGTTGCAGCTATAAAAAAAGTCCACCCTAACGTAAAAGTCATGGTAAGCCTGTCTGGTTGGAGTATAGGCACGAAAACTTTACACTGGTACATCCCAGAAAACTCCGAAAAATGGATAAGTAATGCCGTCTCATCTCTCACTTCCATCATCACCACTTACCATCTTGATGGCATTGACATAGACTACGAAAAGTTCCGCAACAGTTCTAAAACCAATGCTAATTTTGCTTATTGCATTGGCGAGCTTATCACACGTTTGAAAGACCAGGGTGTCATTTCCGTGGCCAGCATTGCACCGTTTTACAGCACAGTTGCGCCTTACATTGCACTCTATCAGGGTTATGGACATGCCATAGACTATGTCAATCACCAGTTCTACACTGACAAGGTAAAGACTCCGAAAGGATATTTGAAGGCGTTCGAGCTACGAGCCAACCAATTTGACAAGACAAAGCTGTTGCCAGCCTATGAAGTGAACGGAAGAGGAATTCAGGGCGATATTTTCTTTGATGCTTTAAGCCTATTGGAGGAAAATGGATTCCTAATTAATGGGGTGATGATCTTCTCAGCTGATGCTTCTTCTGAGAATAAGTATCACTATGAGAGGAAATCACAGGCTTTCTTGCTCAATTCTACTAGCACATCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

300

Amino Acids

33.48

Weight (kDa)

5.63

Isoelectric Point (pI)

18.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 83 - 210 1.7e-11 Glycosyl hydrolases family 18
TIM-barrel_EndoS PF23916 108 - 225 2.5e-06 Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AciI CCGC 1 cut(s) 448
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 2 cut(s) 212, 738
AfaI GTAC 3 cut(s) 89, 129, 341
AfiI CCNNNNNNNGG 2 cut(s) 363, 778
AflIII ACRYGT 1 cut(s) 503
AgsI TTSAA 2 cut(s) 511, 664
AjnI CCWGG 1 cut(s) 516
AleI CACNNNNGTG 1 cut(s) 896
AluBI AGCT 7 cut(s) 10, 16, 260, 496, 676, 706, 821
AluI AGCT 7 cut(s) 10, 16, 260, 496, 676, 706, 821
Alw26I GTCTC 1 cut(s) 385
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 212, 738
AseI ATTAAT 2 cut(s) 135, 798
Asp700I GAANNNNTTC 2 cut(s) 214, 668
AspLEI GCGC 1 cut(s) 568
AsuHPI GGTGA 5 cut(s) 88, 210, 394, 611, 817
BalI TGGCCA 1 cut(s) 536
BbvI GCAGC 1 cut(s) 269
BccI CCATC 5 cut(s) 76, 134, 404, 413, 420
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 888
BfuI GTATCC 1 cut(s) 222
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 3 cut(s) 169, 751, 814
BsaJI CCNNGG 2 cut(s) 517, 531
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 778
Bse1I ACTGG 3 cut(s) 106, 341, 622
Bse3DI GCAATG 2 cut(s) 540, 573
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 517, 531
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 363, 778
BseMI GCAATG 2 cut(s) 540, 573
BseMII CTCAG 2 cut(s) 825, 831
BseNI ACTGG 3 cut(s) 106, 341, 622
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 363, 778
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 536
Bsp143I GATC 1 cut(s) 810
BspACI CCGC 1 cut(s) 448
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 2 cut(s) 826, 830
BspLI GGNNCC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 540, 573
BsrI ACTGG 3 cut(s) 106, 341, 622
BssECI CCNNGG 2 cut(s) 517, 531
BssMI GATC 1 cut(s) 810
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 3 cut(s) 455, 549, 562
Bst6I CTCTTC 1 cut(s) 727
BstC8I GCNNGC 4 cut(s) 193, 494, 538, 714
BstDEI CTNAG 2 cut(s) 817, 834
BstDSI CCRYGG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 1 cut(s) 813
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 810
BstMWI GCNNNNNNNGC 5 cut(s) 41, 179, 188, 476, 542
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 419
BsuI GTATCC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 99, 334, 630
Cac8I GCNNGC 4 cut(s) 193, 494, 538, 714
CfoI GCGC 1 cut(s) 568
Csp6I GTAC 3 cut(s) 88, 128, 340
CviAII CATG 2 cut(s) 292, 599
CviQI GTAC 3 cut(s) 88, 128, 340
DdeI CTNAG 2 cut(s) 817, 834
DpnI GATC 1 cut(s) 812
DpnII GATC 1 cut(s) 810
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 727
EarI CTCTTC 1 cut(s) 727
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoRI GAATTC 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 2 cut(s) 295, 602
FatI CATG 2 cut(s) 291, 598
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 888
GlaI GCGC 1 cut(s) 567
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 568
Hin1II CATG 2 cut(s) 295, 602
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HinfI GANTC 3 cut(s) 144, 646, 789
HpaII CCGG 1 cut(s) 36
HphI GGTGA 5 cut(s) 88, 210, 394, 611, 817
Hpy166II GTNNAC 2 cut(s) 274, 727
Hpy188I TCNGA 3 cut(s) 358, 651, 835
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 2 cut(s) 274, 727
HpyAV CCTTC 2 cut(s) 67, 658
HpyCH4III ACNGT 3 cut(s) 455, 549, 562
HpyCH4IV ACGT 2 cut(s) 282, 505
HpyCH4V TGCA 6 cut(s) 44, 182, 257, 486, 545, 578
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 179, 188, 476, 542
HpyF3I CTNAG 2 cut(s) 817, 834
HpySE526I ACGT 2 cut(s) 282, 505
Hsp92II CATG 2 cut(s) 295, 602
HspAI GCGC 1 cut(s) 566
Kzo9I GATC 1 cut(s) 810
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 3 cut(s) 169, 751, 814
MaeI CTAG 1 cut(s) 888
MaeII ACGT 2 cut(s) 282, 505
MalI GATC 1 cut(s) 812
MboI GATC 1 cut(s) 810
MboII GAAGA 4 cut(s) 43, 744, 805, 822
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 8 cut(s) 132, 212, 236, 472, 689, 738, 795, 880
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 2 cut(s) 79, 290
MnlI CCTC 4 cut(s) 62, 728, 772, 849
Mox20I TGGCCA 1 cut(s) 536
MroXI GAANNNNTTC 2 cut(s) 214, 668
MscI TGGCCA 1 cut(s) 536
MseI TTAA 4 cut(s) 135, 239, 767, 798
MslI CAYNNNNRTG 3 cut(s) 417, 530, 896
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 5 cut(s) 41, 179, 188, 476, 542
NdeII GATC 1 cut(s) 810
NlaIII CATG 2 cut(s) 295, 602
NlaIV GGNNCC 1 cut(s) 97
NspI RCATGY 1 cut(s) 602
OliI CACNNNNGTG 1 cut(s) 896
PctI GAATGC 1 cut(s) 44
PdmI GAANNNNTTC 2 cut(s) 214, 668
PfeI GAWTC 2 cut(s) 144, 789
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
PshBI ATTAAT 2 cut(s) 135, 798
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 89, 129, 341
RsaNI GTAC 3 cut(s) 88, 128, 340
RseI CAYNNNNRTG 3 cut(s) 417, 530, 896
SaqAI TTAA 4 cut(s) 135, 239, 767, 798
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 810
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 1 cut(s) 518
SfaNI GCATC 3 cut(s) 169, 751, 814
SmiMI CAYNNNNRTG 3 cut(s) 417, 530, 896
Sse9I AATT 8 cut(s) 132, 212, 236, 472, 689, 738, 795, 880
SsiI CCGC 1 cut(s) 448
SspMI CTAG 1 cut(s) 888
StyD4I CCNGG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 455, 549, 562
TaiI ACGT 2 cut(s) 285, 508
TaqI TCGA 2 cut(s) 147, 672
TasI AATT 8 cut(s) 132, 212, 236, 472, 689, 738, 795, 880
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 2 cut(s) 144, 789
Tru1I TTAA 4 cut(s) 135, 239, 767, 798
Tru9I TTAA 4 cut(s) 135, 239, 767, 798
TscAI CASTG 3 cut(s) 106, 341, 637
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 5 cut(s) 37, 143, 148, 201, 735
TspGWI ACGGA 3 cut(s) 222, 520, 744
TspRI CASTG 3 cut(s) 106, 341, 637
Tth111I GACNNNGTC 1 cut(s) 611
VspI ATTAAT 2 cut(s) 135, 798
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 2 cut(s) 212, 738
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 214, 668
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.