pycom09g16970

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
17405650 .. 17406578
929 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16970.1

Sequence Viewer

Length: 594 bp
ATGGACAAAAACAGTCGTGCTTGGAATAAAGGACGAATCCACTACTCAAATAACCAAGACGAAGTATTCAAGGCATATCAAGCTCAATATGCTGAGGACATGGAGTGTTTCCTCCGCGCAAGAGCACTAGAGACTGTGCATCGAGGATTGATGGTGCTTAACCTTTTAGGACTCCCTCGTCCCTTTGTTGAAATTGTGGGTTTTGACATTTTAGGATCTTGCTTCCTGGAGATGGCTGGGAAGGGGGTAATTAGTGAAGAAACAGTAGATTCATTTAACATCCCTTGCTACTTCGTGTCTCCCCAAGAACTGGAAGTCATTGTGGAACGAAATGGATGCTTTAGCATAGAGAGGTTGGAAACCTTACCTCAGCATGTCGTGAAACATGGCGCTCTCAGTGCTTCTGCTATAGCTAAAGTTGCTGCATCTACCCTGAGAGCTGCCATAGAGGGACTGATCAAGCAACATTTTGGAGAAGAAATCTTAGATGATCTCTTCAGCTTGTATCAGCAGAAAATCGAAGAGCAAATCTCAATATATGAGTCAAAGACGCCATTTGTCCTTTTTGTTGTGCTTAAACGCAAGACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

198

Amino Acids

22.32

Weight (kDa)

5.59

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 194 5.9e-51 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 310
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 232, 310
AgsI TTSAA 2 cut(s) 70, 191
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 4 cut(s) 83, 413, 440, 501
AluI AGCT 4 cut(s) 83, 413, 440, 501
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 125, 303
AlwI GGATC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 422, 440
AspLEI GCGC 2 cut(s) 119, 392
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 2 cut(s) 93, 369
BbvI GCAGC 2 cut(s) 409, 427
BccI CCATC 2 cut(s) 145, 226
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 125, 303
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 393
BisI GCNGC 2 cut(s) 423, 441
BlsI GCNGC 2 cut(s) 424, 442
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 3 cut(s) 148, 326, 434
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 2 cut(s) 93, 369
BsaHI GRCGYC 1 cut(s) 551
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 310
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 279, 341
BseLI CCNNNNNNNGG 2 cut(s) 232, 310
BseMII CTCAG 4 cut(s) 84, 383, 409, 425
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 409, 427
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 127
BslFI GGGAC 2 cut(s) 165, 465
BslI CCNNNNNNNGG 2 cut(s) 232, 310
BsmAI GTCTC 2 cut(s) 125, 303
BsmFI GGGAC 2 cut(s) 165, 465
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 3 cut(s) 215, 456, 490
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 4 cut(s) 85, 382, 408, 426
BspFNI CGCG 1 cut(s) 117
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 516
BsrI ACTGG 1 cut(s) 315
BssMI GATC 3 cut(s) 215, 456, 490
BssNI GRCGYC 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 14, 136, 265
Bst6I CTCTTC 2 cut(s) 500, 516
BstACI GRCGYC 1 cut(s) 551
BstDEI CTNAG 5 cut(s) 93, 369, 395, 434, 484
BstF5I GGATG 2 cut(s) 279, 341
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 2 cut(s) 119, 392
BstKTI GATC 3 cut(s) 218, 459, 493
BstMAI GTCTC 2 cut(s) 125, 303
BstMBI GATC 3 cut(s) 215, 456, 490
BstMWI GCNNNNNNNGC 4 cut(s) 80, 89, 398, 419
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 409, 427
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtsCI GGATG 2 cut(s) 279, 341
BtsIMutI CAGTG 1 cut(s) 403
CfoI GCGC 2 cut(s) 119, 392
CseI GACGC 1 cut(s) 559
CviAII CATG 3 cut(s) 100, 374, 386
CviJI RGCY 5 cut(s) 83, 236, 413, 440, 501
CviKI_1 RGCY 5 cut(s) 83, 236, 413, 440, 501
DdeI CTNAG 5 cut(s) 93, 369, 395, 434, 484
DpnI GATC 3 cut(s) 217, 458, 492
DpnII GATC 3 cut(s) 215, 456, 490
DrdI GACNNNNNNGTC 1 cut(s) 177
DseDI GACNNNNNNGTC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 500, 516
EarI CTCTTC 2 cut(s) 500, 516
Eco57I CTGAAG 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 103, 377, 389
FaqI GGGAC 2 cut(s) 165, 465
FatI CATG 3 cut(s) 99, 373, 385
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 423, 441
FokI GGATG 2 cut(s) 266, 348
Fsp4HI GCNGC 2 cut(s) 423, 441
FspBI CTAG 1 cut(s) 128
GlaI GCGC 2 cut(s) 118, 391
GluI GCNGC 2 cut(s) 423, 441
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 393
HgaI GACGC 1 cut(s) 559
HhaI GCGC 2 cut(s) 119, 392
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 3 cut(s) 103, 377, 389
Hin6I GCGC 2 cut(s) 117, 390
HinP1I GCGC 2 cut(s) 117, 390
HinfI GANTC 4 cut(s) 36, 171, 269, 542
Hpy188III TCNNGA 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 3 cut(s) 14, 136, 265
HpyCH4V TGCA 2 cut(s) 139, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 89, 398, 419
HpyF3I CTNAG 5 cut(s) 93, 369, 395, 434, 484
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 3 cut(s) 103, 377, 389
HspAI GCGC 2 cut(s) 117, 390
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 3 cut(s) 215, 456, 490
LguI GCTCTTC 1 cut(s) 516
LpnPI CCDG 5 cut(s) 212, 222, 239, 296, 446
Lsp1109I GCAGC 2 cut(s) 409, 427
LweI GCATC 3 cut(s) 148, 326, 434
MaeI CTAG 1 cut(s) 128
MalI GATC 3 cut(s) 217, 458, 492
MboI GATC 3 cut(s) 215, 456, 490
MboII GAAGA 4 cut(s) 269, 487, 488, 533
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 3 cut(s) 192, 249, 589
MlyI GAGTC 2 cut(s) 165, 551
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 7 cut(s) 88, 122, 137, 186, 345, 378, 442
MseI TTAA 3 cut(s) 159, 276, 576
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 4 cut(s) 80, 89, 398, 419
NdeII GATC 3 cut(s) 215, 456, 490
NlaIII CATG 3 cut(s) 103, 377, 389
NspI RCATGY 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 36, 269
PflMI CCANNNNNTGG 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 2 cut(s) 424, 442
PleI GAGTC 2 cut(s) 165, 550
PpsI GAGTC 2 cut(s) 165, 550
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 159, 276, 576
SatI GCNGC 2 cut(s) 423, 441
Sau3AI GATC 3 cut(s) 215, 456, 490
SchI GAGTC 2 cut(s) 165, 551
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 127
SetI ASST 8 cut(s) 85, 165, 356, 365, 370, 415, 442, 503
SfaNI GCATC 3 cut(s) 148, 326, 434
SfcI CTRYAG 1 cut(s) 408
Sse9I AATT 3 cut(s) 192, 249, 589
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 14, 136, 265
TaqI TCGA 2 cut(s) 142, 519
TasI AATT 3 cut(s) 192, 249, 589
TfiI GAWTC 2 cut(s) 36, 269
Tru1I TTAA 3 cut(s) 159, 276, 576
Tru9I TTAA 3 cut(s) 159, 276, 576
TscAI CASTG 1 cut(s) 403
TseI GCWGC 2 cut(s) 422, 440
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 310
XceI RCATGY 1 cut(s) 377
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.