RLG00000005390

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000151
Physical Location & Seq
Reverse (-)
67266395 .. 67267110
716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005390

Sequence Viewer

Length: 597 bp
ATGGATAGTAGCAGTCCTGCTTGGAACAAAGGTCGAATTCATTACTCAGATTCCACAGATGAAGTAATAAGGGCTTATGAAACTCAATATACTGAGGACATGAAATGCTTCCTGCAAGCTAGGGCACATGAGATTGTGTATGGAGGACTAATGGTACTCACCTTTCCAGGCCGCCTCGATGGCACCCCACATTCTGATGCTCCTCCAAATGTGATCTTCCAACTTTTAGGATCTTCCATCCAGGACTTGGTCACAAAGGGAGTTGTTAGCAAAGAGAAATTGGATTCATTTAGCATACCAACATATAACATGTCACCCCAAGAACTAGTAGCTGTTGTAGAACAAAATAAATGCATTAGCATAGAGAAAATGGTAGATGTACCTCTTCCCTTGGTACATGACACCGTCTTAAAGGCACAGCTACTTGCCTCTCACGTGAGAGCTGGCATGGAGGGGGACCTCAAGCAGCAATTTGGAGAAGAAATCTTAGACGAGCTCTTCAATTTGTTTCTCAAAAAATGTGAAGATCATGACTCCAGATTTGATCCAGAGAAATCAGTCAACTTTCTGGTTGTGCTTAGACGCAAGGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

199

Amino Acids

22.3

Weight (kDa)

5.14

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 195 3.3e-49 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 247
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 238, 539
AcsI RAATTY 1 cut(s) 36
AcvI CACGTG 1 cut(s) 436
AfaI GTAC 3 cut(s) 156, 381, 396
AfiI CCNNNNNNNGG 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 502
AhlI ACTAGT 1 cut(s) 325
AjnI CCWGG 2 cut(s) 166, 240
AluBI AGCT 5 cut(s) 119, 332, 421, 443, 496
AluI AGCT 5 cut(s) 119, 332, 421, 443, 496
Alw21I GWGCWC 1 cut(s) 498
AlwI GGATC 2 cut(s) 238, 539
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 2 cut(s) 151, 306
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 498
BbrPI CACGTG 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 173, 245
BciT130I CCWGG 2 cut(s) 168, 242
BcuI ACTAGT 1 cut(s) 325
BfaI CTAG 2 cut(s) 120, 326
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 172, 467
BlsI GCNGC 2 cut(s) 173, 468
Bme1390I CCNGG 2 cut(s) 168, 242
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 184, 458
BmrFI CCNGG 2 cut(s) 168, 242
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseBI CCWGG 2 cut(s) 168, 242
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 2 cut(s) 60, 84
BseRI GAGGAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 498
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 127, 498
Bsp143I GATC 4 cut(s) 213, 230, 526, 544
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 59, 85
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 184, 458
BspPI GGATC 2 cut(s) 238, 539
BspQI GCTCTTC 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 4 cut(s) 213, 230, 526, 544
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 168, 242
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 390, 503
BstBAI YACGTR 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 117, 445
BstDEI CTNAG 4 cut(s) 46, 93, 487, 578
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 4 cut(s) 216, 233, 529, 547
BstMBI GATC 4 cut(s) 213, 230, 526, 544
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 2 cut(s) 168, 242
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 166, 240
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 117, 445
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 591
Csp6I GTAC 3 cut(s) 155, 380, 395
CviAII CATG 6 cut(s) 100, 128, 310, 398, 448, 530
CviJI RGCY 7 cut(s) 74, 119, 171, 332, 421, 443, 496
CviKI_1 RGCY 7 cut(s) 74, 119, 171, 332, 421, 443, 496
CviQI GTAC 3 cut(s) 155, 380, 395
DdeI CTNAG 4 cut(s) 46, 93, 487, 578
DpnI GATC 4 cut(s) 215, 232, 528, 546
DpnII GATC 4 cut(s) 213, 230, 526, 544
Eam1104I CTCTTC 2 cut(s) 390, 503
EarI CTCTTC 2 cut(s) 390, 503
Ecl136II GAGCTC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 496
Eco72I CACGTG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 166, 240
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 6 cut(s) 103, 131, 313, 401, 451, 533
FaqI GGGAC 1 cut(s) 470
FatI CATG 6 cut(s) 99, 127, 309, 397, 447, 529
Fnu4HI GCNGC 2 cut(s) 172, 467
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 172, 467
FspBI CTAG 2 cut(s) 120, 326
GluI GCNGC 2 cut(s) 172, 467
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 1 cut(s) 171
HgaI GACGC 1 cut(s) 591
Hin1II CATG 6 cut(s) 103, 131, 313, 401, 451, 533
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 3 cut(s) 50, 284, 533
HphI GGTGA 2 cut(s) 151, 306
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 2 cut(s) 49, 196
Hpy188III TCNNGA 3 cut(s) 530, 537, 548
Hpy8I GTNNAC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 115, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 4 cut(s) 46, 93, 487, 578
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 6 cut(s) 103, 131, 313, 401, 451, 533
Kzo9I GATC 4 cut(s) 213, 230, 526, 544
LguI GCTCTTC 1 cut(s) 503
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 120, 326
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 250, 312
MalI GATC 4 cut(s) 215, 232, 528, 546
MboI GATC 4 cut(s) 213, 230, 526, 544
MboII GAAGA 6 cut(s) 208, 225, 377, 490, 491, 536
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 2 cut(s) 127, 498
MluCI AATT 4 cut(s) 36, 278, 470, 502
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 8 cut(s) 88, 137, 185, 213, 393, 439, 445, 470
Mph1103I ATGCAT 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 2 cut(s) 410, 595
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 168, 242
MvaI CCWGG 2 cut(s) 168, 242
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 4 cut(s) 213, 230, 526, 544
NlaIII CATG 6 cut(s) 103, 131, 313, 401, 451, 533
NlaIV GGNNCC 2 cut(s) 184, 458
NmuCI GTSAC 2 cut(s) 250, 312
NsiI ATGCAT 1 cut(s) 356
NspI RCATGY 1 cut(s) 313
PagI TCATGA 1 cut(s) 529
PciI ACATGT 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 50, 284
PflFI GACNNNGTC 2 cut(s) 248, 404
PflMI CCANNNNNTGG 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 2 cut(s) 173, 468
PleI GAGTC 1 cut(s) 527
PmaCI CACGTG 1 cut(s) 436
PmlI CACGTG 1 cut(s) 436
PpsI GAGTC 1 cut(s) 527
Ppu21I YACGTR 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 457
PscI ACATGT 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 166, 240
PspCI CACGTG 1 cut(s) 436
PspGI CCWGG 2 cut(s) 166, 240
PspN4I GGNNCC 2 cut(s) 184, 458
PspPI GGNCC 1 cut(s) 457
PspPPI RGGWCCY 1 cut(s) 457
PsuI RGATCY 1 cut(s) 230
PsyI GACNNNGTC 2 cut(s) 248, 404
RsaI GTAC 3 cut(s) 156, 381, 396
RsaNI GTAC 3 cut(s) 155, 380, 395
RseI CAYNNNNRTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 498
SapI GCTCTTC 1 cut(s) 503
SaqAI TTAA 2 cut(s) 410, 595
SatI GCNGC 2 cut(s) 172, 467
Sau3AI GATC 4 cut(s) 213, 230, 526, 544
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 168, 242
SduI GDGCHC 2 cut(s) 127, 498
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SpeI ACTAGT 1 cut(s) 325
Sse9I AATT 4 cut(s) 36, 278, 470, 502
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 120, 326
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 166, 240
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 34, 177
TasI AATT 4 cut(s) 36, 278, 470, 502
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 50, 284
Tru1I TTAA 2 cut(s) 410, 595
Tru9I TTAA 2 cut(s) 410, 595
TseFI GTSAC 2 cut(s) 250, 312
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 2 cut(s) 250, 312
TspDTI ATGAA 5 cut(s) 29, 75, 93, 116, 276
Tth111I GACNNNGTC 2 cut(s) 248, 404
Van91I CCANNNNNTGG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 1 cut(s) 36
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 120, 326
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.