Rorug04G0027600

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000151
Physical Location & Seq
Forward (+)
3827931 .. 3830300
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0027600.1

Sequence Viewer

Length: 573 bp
ATGGAACTCATTGATTTCTGGTTTCATAAGAAATGGTCATGTGAAGTCAGCTTGGAAATGTTCAGTGAGATGCAAAAGAGTGATCTTGTCTCTTGGAACACTATAATTGGTGCTCTGTTCCAAGAGAGCAAGTTTGGGGAAGCAATTGAACTTTTCAGGGTGATTCAGATTGAGGGAATAAGAGGAGATAGGGTGACCATGGTGGAGGCTGCATCTGCCTGCGGATATCTAGGAGCTCTTGATCTTGCAAAATGTGGTGACCTTCAAAGTGCAGTGAAGGTGTTCGATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCCATGCAAGGAAATGGGGAGTCAGCTATAGAGCTTTTTGATGACATGCTTAAGCAAAGGGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGCCATACACAAGGATTCAACAAACGCAGAGGATCTGATAGTCGGAGGTTGGCTACATGCATGATGATGAGATCAGGGAGGAAAGAGGTGCCACTGGGAATGGGTGCAGATCTTCCCAACTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

190

Amino Acids

21.15

Weight (kDa)

5.34

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 28 - 66 9.8e-06 PPR repeat family
PPR_2 PF13041 101 - 149 3.7e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 532
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 339
AfaI GTAC 1 cut(s) 432
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 149, 266, 463, 569
AluBI AGCT 4 cut(s) 51, 236, 365, 373
AluI AGCT 4 cut(s) 51, 236, 365, 373
Alw21I GWGCWC 2 cut(s) 115, 238
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 484
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 3 cut(s) 209, 323, 444
Asp700I GAANNNNTTC 1 cut(s) 281
AsuHPI GGTGA 4 cut(s) 172, 205, 269, 412
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 115, 238
BbvI GCAGC 3 cut(s) 196, 335, 456
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 389
BglII AGATCT 1 cut(s) 553
BisI GCNGC 3 cut(s) 210, 324, 445
BlsI GCNGC 3 cut(s) 211, 325, 446
BmcAI AGTACT 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 534
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 60, 221
BmuI ACTGGG 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 3 cut(s) 196, 335, 456
BsgI GTGCAG 2 cut(s) 291, 570
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 532
BsiHKAI GWGCWC 2 cut(s) 115, 238
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 115, 238
Bsp143I GATC 5 cut(s) 82, 241, 476, 515, 553
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 532
BspTI CTTAAG 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 5 cut(s) 82, 241, 476, 515, 553
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 220, 442
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 2 cut(s) 193, 257
BstKTI GATC 5 cut(s) 85, 244, 479, 518, 556
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 5 cut(s) 82, 241, 476, 515, 553
BstMWI GCNNNNNNNGC 3 cut(s) 215, 320, 332
BstNSI RCATGY 3 cut(s) 388, 444, 504
BstPI GGTNACC 2 cut(s) 193, 257
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 196, 335, 456
BstX2I RGATCY 2 cut(s) 476, 553
BstYI RGATCY 2 cut(s) 476, 553
BsuRI GGCC 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 3 cut(s) 70, 279, 536
Cac8I GCNNGC 2 cut(s) 220, 442
Csp6I GTAC 1 cut(s) 431
CviAII CATG 8 cut(s) 39, 199, 292, 343, 385, 441, 501, 505
CviJI RGCY 9 cut(s) 51, 209, 236, 326, 341, 365, 373, 447, 497
CviKI_1 RGCY 9 cut(s) 51, 209, 236, 326, 341, 365, 373, 447, 497
CviQI GTAC 1 cut(s) 431
DpnI GATC 5 cut(s) 84, 243, 478, 517, 555
DpnII GATC 5 cut(s) 82, 241, 476, 515, 553
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 236
Eco91I GGTNACC 2 cut(s) 193, 257
EcoICRI GAGCTC 1 cut(s) 236
EcoO65I GGTNACC 2 cut(s) 193, 257
EcoRV GATATC 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 8 cut(s) 42, 202, 295, 346, 388, 444, 504, 508
FatI CATG 8 cut(s) 38, 198, 291, 342, 384, 440, 500, 504
Fnu4HI GCNGC 3 cut(s) 210, 324, 445
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 210, 324, 445
FspBI CTAG 1 cut(s) 230
GluI GCNGC 3 cut(s) 210, 324, 445
HaeIII GGCC 1 cut(s) 341
Hin1II CATG 8 cut(s) 42, 202, 295, 346, 388, 444, 504, 508
HinfI GANTC 3 cut(s) 163, 359, 459
HphI GGTGA 4 cut(s) 172, 205, 269, 412
Hpy188I TCNGA 3 cut(s) 168, 481, 489
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 271, 272
HpyCH4V TGCA 8 cut(s) 73, 212, 248, 272, 346, 444, 504, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 320, 332
Hsp92II CATG 8 cut(s) 42, 202, 295, 346, 388, 444, 504, 508
Kzo9I GATC 5 cut(s) 82, 241, 476, 515, 553
LmnI GCTCC 2 cut(s) 233, 332
LpnPI CCDG 6 cut(s) 4, 142, 232, 420, 504, 524
Lsp1109I GCAGC 3 cut(s) 196, 335, 456
LweI GCATC 2 cut(s) 60, 221
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 193, 257
MalI GATC 5 cut(s) 84, 243, 478, 517, 555
MboI GATC 5 cut(s) 82, 241, 476, 515, 553
MboII GAAGA 2 cut(s) 312, 548
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 2 cut(s) 476, 553
MhlI GDGCHC 2 cut(s) 115, 238
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 2 cut(s) 105, 144
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 7 cut(s) 166, 176, 199, 467, 483, 516, 523
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 389
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 215, 320, 332
NcoI CCATGG 1 cut(s) 198
NdeII GATC 5 cut(s) 82, 241, 476, 515, 553
NlaIII CATG 8 cut(s) 42, 202, 295, 346, 388, 444, 504, 508
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 2 cut(s) 193, 257
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 3 cut(s) 388, 444, 504
PaeI GCATGC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 163, 459
PkrI GCNGC 3 cut(s) 211, 325, 446
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 238
PspEI GGTNACC 2 cut(s) 193, 257
PspN4I GGNNCC 1 cut(s) 534
PsuI RGATCY 2 cut(s) 476, 553
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 210, 324, 445
Sau3AI GATC 5 cut(s) 82, 241, 476, 515, 553
ScaI AGTACT 1 cut(s) 432
SchI GAGTC 1 cut(s) 368
SduI GDGCHC 2 cut(s) 115, 238
SetI ASST 8 cut(s) 53, 238, 264, 282, 367, 375, 494, 534
SfaNI GCATC 2 cut(s) 60, 221
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SphI GCATGC 1 cut(s) 444
Sse9I AATT 2 cut(s) 105, 144
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 238
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 105, 144
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 2 cut(s) 163, 459
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 3 cut(s) 70, 279, 543
TseFI GTSAC 2 cut(s) 193, 257
TseI GCWGC 3 cut(s) 209, 323, 444
Tsp45I GTSAC 2 cut(s) 193, 257
TspDTI ATGAA 2 cut(s) 14, 426
TspRI CASTG 3 cut(s) 70, 279, 543
Vha464I CTTAAG 1 cut(s) 389
XceI RCATGY 3 cut(s) 388, 444, 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.