Rh1AG082400

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000151
Physical Location & Seq
Reverse (-)
14138394 .. 14140120
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG082400.1

Sequence Viewer

Length: 786 bp
ATGGATACTTTCAGATCAACGCTTGGAATAAACAAGATTACAAAATTCGCACTTCTAATTTTGCAGAGGAGTTGTGGGTGTTGTAAAGAGCTTCTAAACAAGGCAATTCTAGAAAAGCTTGACATAGACATCACGCTGTTGTCCAACACCTTTCACATTGCAGATCTGGGTTGCTCTGTTGGTCCAAATACATTTTATTCAGTGGAAAATATACTTGAAGCAGTGCAGTCCAAGTATCAAATCCAGGGGCAGAATTCCCAAATCCCAGAATTTCAAGTTTTCTTCAATGATCATGCTCAAAATGATTTCAACATGCTTTTCAAATCCATCCCTCAGAACAGGCAATACTTTGCAGTTGGTGTGCCTGGTTCTTTCCACGGCCGGCTATTTCCTAAAGCTTCGATTCACATTGTTCACTCTTCTTATGCCATTCAATGGCTTTCTAGAGTACCAGAAGCGGTAGTGGACAGCAGCAGTTCTGCTTGGAATAAAGGACGAATCCATTATTCAAATTCCACAGATGAAGTAATAAGGGCTCATGAAACTCAATATAGTGAGGACATGGAGTGCTTCCTGCATTCCAGGGCACAAGAGATTATGTATGGAGGACTGATGATACTTATGATTCCAGGCCGCCCCGATGGAACTCCTCACTCCCATTCTCAGGCAAATATGACCTTACAATTTCTAGGATCATGCCTCATGGACATGGCTAGAAAGGGAGACGTTAGTGAAGAGAAAGTAGATTCATTTAACATACCTATGTATACCATGTCTCCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

261

Amino Acids

29.44

Weight (kDa)

6.04

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 42 - 260 1e-85 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 435
AccI GTMKAC 1 cut(s) 767
AciI CCGC 2 cut(s) 458, 634
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 4 cut(s) 44, 253, 269, 511
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 435, 664
AgsI TTSAA 7 cut(s) 218, 275, 286, 310, 322, 434, 510
AjnI CCWGG 4 cut(s) 243, 364, 581, 628
AluBI AGCT 3 cut(s) 91, 118, 398
AluI AGCT 3 cut(s) 91, 118, 398
Alw26I GTCTC 2 cut(s) 717, 780
AlwI GGATC 1 cut(s) 700
AoxI GGCC 2 cut(s) 379, 631
ApeKI GCWGC 1 cut(s) 471
ApoI RAATTY 4 cut(s) 44, 253, 269, 511
AspS9I GGNCC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 483
BccI CCATC 2 cut(s) 335, 635
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 4 cut(s) 245, 366, 583, 630
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 717, 780
BfaI CTAG 4 cut(s) 110, 444, 689, 714
BglII AGATCT 1 cut(s) 163
BisI GCNGC 2 cut(s) 472, 634
BlsI GCNGC 2 cut(s) 473, 635
Bme1390I CCNGG 4 cut(s) 245, 366, 583, 630
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 4 cut(s) 245, 366, 583, 630
BsaJI CCNNGG 3 cut(s) 244, 376, 582
BsaXI ACNNNNNCTCC 1 cut(s) 760
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 664
Bse118I RCCGGY 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 4 cut(s) 245, 366, 583, 630
BseDI CCNNGG 3 cut(s) 244, 376, 582
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 435, 664
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 347, 677
BseRI GAGGAG 2 cut(s) 82, 639
BseSI GKGCMC 1 cut(s) 589
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 483
BsgI GTGCAG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 2 cut(s) 381, 633
BsiEI CGRYCG 1 cut(s) 382
BsiSI CCGG 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 435, 664
BsmAI GTCTC 2 cut(s) 717, 780
BsmBI CGTCTC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 2 cut(s) 381, 633
Bsp1286I GDGCHC 2 cut(s) 538, 589
Bsp143I GATC 4 cut(s) 14, 163, 289, 692
BspACI CCGC 2 cut(s) 458, 634
BspANI GGCC 2 cut(s) 381, 633
BspCNI CTCAG 2 cut(s) 346, 676
BspHI TCATGA 1 cut(s) 538
BspPI GGATC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 3 cut(s) 244, 376, 582
BssMI GATC 4 cut(s) 14, 163, 289, 692
BssNAI GTATAC 1 cut(s) 768
Bst1107I GTATAC 1 cut(s) 768
Bst2UI CCWGG 4 cut(s) 245, 366, 583, 630
Bst6I CTCTTC 2 cut(s) 424, 729
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 333, 663
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 4 cut(s) 17, 166, 292, 695
BstMAI GTCTC 2 cut(s) 717, 780
BstMBI GATC 4 cut(s) 14, 163, 289, 692
BstMCI CGRYCG 1 cut(s) 382
BstNI CCWGG 4 cut(s) 245, 366, 583, 630
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 4 cut(s) 243, 364, 581, 628
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BstZ17I GTATAC 1 cut(s) 768
BstZI CGGCCG 1 cut(s) 379
BsuRI GGCC 2 cut(s) 381, 633
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 207, 228
Cac8I GCNNGC 1 cut(s) 383
CciI TCATGA 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 449
CviAII CATG 8 cut(s) 293, 313, 539, 562, 696, 703, 709, 772
CviJI RGCY 9 cut(s) 91, 118, 381, 385, 398, 439, 536, 633, 713
CviKI_1 RGCY 9 cut(s) 91, 118, 381, 385, 398, 439, 536, 633, 713
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 333, 663
DpnI GATC 4 cut(s) 16, 165, 291, 694
DpnII GATC 4 cut(s) 14, 163, 289, 692
EaeI YGGCCR 1 cut(s) 379
EagI CGGCCG 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 424, 729
EarI CTCTTC 2 cut(s) 424, 729
EclXI CGGCCG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 182
Eco52I CGGCCG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 4 cut(s) 243, 364, 581, 628
EcoT38I GRGCYC 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 717
FaeI CATG 8 cut(s) 296, 316, 542, 565, 699, 706, 712, 775
FatI CATG 8 cut(s) 292, 312, 538, 561, 695, 702, 708, 771
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 2 cut(s) 472, 634
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 472, 634
FspBI CTAG 4 cut(s) 110, 444, 689, 714
GluI GCNGC 2 cut(s) 472, 634
HaeIII GGCC 2 cut(s) 381, 633
HapII CCGG 1 cut(s) 382
Hin1II CATG 8 cut(s) 296, 316, 542, 565, 699, 706, 712, 775
HindIII AAGCTT 2 cut(s) 116, 396
HinfI GANTC 4 cut(s) 403, 498, 625, 746
HpaII CCGG 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 415, 466, 768
Hpy188I TCNGA 2 cut(s) 14, 336
Hpy188III TCNNGA 3 cut(s) 110, 444, 539
Hpy8I GTNNAC 3 cut(s) 415, 466, 768
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 5 cut(s) 64, 161, 226, 353, 577
HpyF3I CTNAG 2 cut(s) 333, 663
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 8 cut(s) 296, 316, 542, 565, 699, 706, 712, 775
KroI GCCGGC 1 cut(s) 381
KroNI GCCGGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 14, 163, 289, 692
Lsp1109I GCAGC 1 cut(s) 483
MaeI CTAG 4 cut(s) 110, 444, 689, 714
MaeII ACGT 1 cut(s) 726
MalI GATC 4 cut(s) 16, 165, 291, 694
MboI GATC 4 cut(s) 14, 163, 289, 692
MboII GAAGA 3 cut(s) 274, 411, 746
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 538, 589
MluCI AATT 7 cut(s) 44, 57, 105, 253, 269, 511, 683
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 6 cut(s) 60, 342, 550, 599, 660, 710
MroNI GCCGGC 1 cut(s) 381
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 2 cut(s) 707, 761
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 4 cut(s) 245, 366, 583, 630
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 4 cut(s) 245, 366, 583, 630
NaeI GCCGGC 1 cut(s) 383
NdeII GATC 4 cut(s) 14, 163, 289, 692
NgoMIV GCCGGC 1 cut(s) 381
NlaIII CATG 8 cut(s) 296, 316, 542, 565, 699, 706, 712, 775
NspI RCATGY 1 cut(s) 316
PagI TCATGA 1 cut(s) 538
PctI GAATGC 1 cut(s) 577
PdiI GCCGGC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 403, 498, 625, 746
PflMI CCANNNNNTGG 1 cut(s) 435
PkrI GCNGC 2 cut(s) 473, 635
Psp6I CCWGG 4 cut(s) 243, 364, 581, 628
PspGI CCWGG 4 cut(s) 243, 364, 581, 628
PspPI GGNCC 1 cut(s) 182
PsrI GAACNNNNNNTAC 2 cut(s) 329, 361
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 2 cut(s) 707, 761
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 2 cut(s) 472, 634
Sau3AI GATC 4 cut(s) 14, 163, 289, 692
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 4 cut(s) 245, 366, 583, 630
SduI GDGCHC 2 cut(s) 538, 589
SetI ASST 7 cut(s) 93, 120, 152, 400, 680, 729, 763
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 707, 761
Sse9I AATT 7 cut(s) 44, 57, 105, 253, 269, 511, 683
SsiI CCGC 2 cut(s) 458, 634
SspMI CTAG 4 cut(s) 110, 444, 689, 714
StyD4I CCNGG 4 cut(s) 243, 364, 581, 628
TaiI ACGT 1 cut(s) 729
TaqI TCGA 1 cut(s) 401
TasI AATT 7 cut(s) 44, 57, 105, 253, 269, 511, 683
TauI GCSGC 1 cut(s) 636
TfiI GAWTC 4 cut(s) 403, 498, 625, 746
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 2 cut(s) 207, 228
TseI GCWGC 1 cut(s) 471
TspDTI ATGAA 3 cut(s) 537, 555, 738
TspRI CASTG 2 cut(s) 207, 228
Van91I CCANNNNNTGG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 4 cut(s) 44, 253, 269, 511
XbaI TCTAGA 2 cut(s) 109, 443
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 4 cut(s) 110, 444, 689, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.