Rmu_co8337425.1_g000001
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8337425.1
OG0000151
Physical Location & Seq
Reverse (-)
54 .. 921
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8337425.1_g000001.1.cds

Sequence Viewer

Length: 750 bp
atgctcttccagtccctccctcccaacagacaatactatgcaatgggtgtgcccggttctttctatggtcgtctatttcctaaagcttcggttcactttgttcactcttcttacgccattcattggctttcaagggtaccgaagcaggtacttgataaaaatagccccgcttggaacaaaggacgaatccattacctaaattccacagatgcagtagtgagggcatttgaagctcaatatgctgaggacatggcgtgcttcctgcatgccagggcacaagagattgtctgtggaggattgatggtacttatcattccaggtcacattcaagatacacatcattcccaatctttcagaaatatgacctatcaactactagggtcttgcctcatggacttggctaggaagggagtagttagcgaggagaaggtagattcgtttaatatacctatttactatatgtctccccaagaactggaagcttctgtagaaagaaatggctgttttagcatagagggtatggaaaacttacgtaagatctcaaaacttggcagtgtcaccgaaagtgcccaactaattgcatctcacggaagagctgtcatggagggactgttcaggcagcaatttggagatgaaattttagatgagctctttgacttgtaccgcaagaaacttgaagagaatccctgcatctttgagtcaatggatgcaactctctttcttgccgtgcttaaacgcaacgcaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

249

Amino Acids

28.28

Weight (kDa)

6.5

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AccB7I CCANNNNNTGG 2 cut(s) 123, 475
AciI CCGC 2 cut(s) 168, 664
AcsI RAATTY 2 cut(s) 199, 636
AfaI GTAC 4 cut(s) 138, 150, 306, 662
AfiI CCNNNNNNNGG 2 cut(s) 123, 475
AgsI TTSAA 4 cut(s) 132, 230, 329, 677
AjnI CCWGG 2 cut(s) 269, 316
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 5 cut(s) 86, 233, 482, 596, 649
AluI AGCT 5 cut(s) 86, 233, 482, 596, 649
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 619
ApoI RAATTY 2 cut(s) 199, 636
Asp718I GGTACC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 550
BaeGI GKGCMC 3 cut(s) 54, 277, 571
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 631
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 710
BciT130I CCWGG 2 cut(s) 271, 318
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 2 cut(s) 377, 402
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 537
BisI GCNGC 1 cut(s) 620
BlsI GCNGC 1 cut(s) 621
Bme1390I CCNGG 3 cut(s) 54, 271, 318
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 3 cut(s) 54, 271, 318
BmsI GCATC 4 cut(s) 199, 590, 697, 699
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 475
Bse1I ACTGG 2 cut(s) 10, 480
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 2 cut(s) 271, 318
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 712
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 123, 475
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 10, 480
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 3 cut(s) 54, 277, 571
BseXI GCAGC 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 123, 475
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 621
Bsp1286I GDGCHC 4 cut(s) 54, 277, 571, 651
Bsp143I GATC 1 cut(s) 537
BspACI CCGC 2 cut(s) 168, 664
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 136
BspQI GCTCTTC 2 cut(s) 11, 586
BspT107I GGYRCC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 2 cut(s) 10, 480
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 271, 318
Bst4CI ACNGT 1 cut(s) 612
Bst6I CTCTTC 4 cut(s) 11, 112, 586, 672
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 256, 267
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 712
BstKTI GATC 1 cut(s) 540
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 1 cut(s) 537
BstMWI GCNNNNNNNGC 3 cut(s) 230, 239, 507
BstNI CCWGG 2 cut(s) 271, 318
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 52, 269, 316
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 3 cut(s) 54, 277, 571
BstSNI TACGTA 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
BtsCI GGATG 1 cut(s) 712
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 256, 267
Csp6I GTAC 4 cut(s) 137, 149, 305, 661
CviAII CATG 4 cut(s) 250, 266, 391, 601
CviJI RGCY 9 cut(s) 86, 127, 165, 233, 401, 482, 501, 596, 649
CviKI_1 RGCY 9 cut(s) 86, 127, 165, 233, 401, 482, 501, 596, 649
CviQI GTAC 4 cut(s) 137, 149, 305, 661
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 539
DpnII GATC 1 cut(s) 537
Eam1104I CTCTTC 4 cut(s) 11, 112, 586, 672
EarI CTCTTC 4 cut(s) 11, 112, 586, 672
Ecl136II GAGCTC 1 cut(s) 649
Eco105I TACGTA 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 269, 316
EcoT38I GRGCYC 1 cut(s) 651
FaeI CATG 4 cut(s) 253, 269, 394, 604
FaqI GGGAC 1 cut(s) 621
FatI CATG 4 cut(s) 249, 265, 390, 600
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 620
FokI GGATG 1 cut(s) 719
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 1 cut(s) 620
FspBI CTAG 2 cut(s) 377, 402
GluI GCNGC 1 cut(s) 620
HapII CCGG 1 cut(s) 54
Hin1II CATG 4 cut(s) 253, 269, 394, 604
HindIII AAGCTT 2 cut(s) 84, 480
HinfI GANTC 4 cut(s) 186, 434, 682, 698
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 94, 103
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 2 cut(s) 94, 103
HpyAV CCTTC 2 cut(s) 400, 421
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 6 cut(s) 41, 212, 265, 581, 690, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 239, 507
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 4 cut(s) 253, 269, 394, 604
KpnI GGTACC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 537
LguI GCTCTTC 2 cut(s) 11, 586
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 4 cut(s) 199, 590, 697, 699
MaeI CTAG 2 cut(s) 377, 402
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 2 cut(s) 320, 556
MalI GATC 1 cut(s) 539
MboI GATC 1 cut(s) 537
MboII GAAGA 3 cut(s) 99, 603, 689
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 4 cut(s) 54, 277, 571, 651
MluCI AATT 5 cut(s) 199, 576, 623, 636, 745
MlyI GAGTC 1 cut(s) 707
MnlI CCTC 9 cut(s) 26, 30, 213, 238, 287, 398, 415, 508, 598
MseI TTAA 2 cut(s) 441, 732
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 3 cut(s) 54, 271, 318
MvaI CCWGG 2 cut(s) 271, 318
MwoI GCNNNNNNNGC 3 cut(s) 230, 239, 507
NciI CCSGG 1 cut(s) 54
NdeII GATC 1 cut(s) 537
NlaIII CATG 4 cut(s) 253, 269, 394, 604
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 320, 556
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PciSI GCTCTTC 2 cut(s) 11, 586
PfeI GAWTC 3 cut(s) 186, 434, 682
PflMI CCANNNNNTGG 2 cut(s) 123, 475
PkrI GCNGC 1 cut(s) 621
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
Ppu21I YACGTR 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 269, 316
PspGI CCWGG 2 cut(s) 269, 316
PspN4I GGNNCC 1 cut(s) 138
PsuI RGATCY 1 cut(s) 537
RsaI GTAC 4 cut(s) 138, 150, 306, 662
RsaNI GTAC 4 cut(s) 137, 149, 305, 661
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 2 cut(s) 11, 586
SaqAI TTAA 2 cut(s) 441, 732
SatI GCNGC 1 cut(s) 620
Sau3AI GATC 1 cut(s) 537
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 3 cut(s) 54, 271, 318
SduI GDGCHC 4 cut(s) 54, 277, 571, 651
SfaNI GCATC 4 cut(s) 199, 590, 697, 699
SfcI CTRYAG 1 cut(s) 486
SnaBI TACGTA 1 cut(s) 533
SphI GCATGC 1 cut(s) 269
Sse9I AATT 5 cut(s) 199, 576, 623, 636, 745
SsiI CCGC 2 cut(s) 168, 664
SspMI CTAG 2 cut(s) 377, 402
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 3 cut(s) 52, 269, 316
TaaI ACNGT 1 cut(s) 612
TaiI ACGT 1 cut(s) 535
TasI AATT 5 cut(s) 199, 576, 623, 636, 745
TfiI GAWTC 3 cut(s) 186, 434, 682
Tru1I TTAA 2 cut(s) 441, 732
Tru9I TTAA 2 cut(s) 441, 732
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 2 cut(s) 320, 556
TseI GCWGC 1 cut(s) 619
Tsp45I GTSAC 2 cut(s) 320, 556
TspDTI ATGAA 2 cut(s) 110, 648
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 2 cut(s) 123, 475
XapI RAATTY 2 cut(s) 199, 636
XceI RCATGY 1 cut(s) 269
XspI CTAG 2 cut(s) 377, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.