RLG00000005394

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000151
Physical Location & Seq
Reverse (-)
67321244 .. 67321818
575 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005394

Sequence Viewer

Length: 426 bp
ATGCGTAAAGAGGTTGCAGTTGCTGCCAAGGAACTTGTAGACAAGGCAATTGTAGAAAAGCTCGACGTGAAATTCTTGTTATCATCTTCCACCACCTTTCAGTTTGCAGATCTGGGTTGCTCTATAGGGCCTAATACATTTTTGTCTGTCGAAAACATACTCCAAGCTGTGAAATTCAAGTATCATAGCCAAGGGTGGCGATGTTCCGATCAAATCCTTGAATTTCAAGTTTTTTTCAGTGACCATACTTCAAATGACTTCAATATGCTTTTCAAATCCCTCCCTAAGAACCGACAGTACTATGCCGCGGGTGTGCCTGGTTCTTTTTATGGTCGCCTATTTCCTAAAGCTTCTATCCATATCTTTCATGCTTCTTATGCCATTCATTGGCTAGGTAGCGGACAGAAACAGTCCAGCTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

8.89

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 28 - 132 1.5e-41 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 387
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 308
AciI CCGC 3 cut(s) 306, 308, 399
AcsI RAATTY 3 cut(s) 71, 173, 221
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 6 cut(s) 178, 221, 227, 252, 262, 274
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 4 cut(s) 61, 167, 350, 417
AluI AGCT 4 cut(s) 61, 167, 350, 417
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 71, 173, 221
AspS9I GGNCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 318
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 123
BglII AGATCT 1 cut(s) 109
BisI GCNGC 2 cut(s) 24, 306
BlsI GCNGC 2 cut(s) 25, 307
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 318
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 27, 190, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 27, 190, 306
BseLI CCNNNNNNNGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 387
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 109, 208
BspACI CCGC 3 cut(s) 306, 308, 399
BspANI GGCC 1 cut(s) 130
BspFNI CGCG 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 27, 190, 306
BssMI GATC 2 cut(s) 109, 208
BssT1I CCWWGG 2 cut(s) 27, 190
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 297, 411
BstAPI GCANNNNNTGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 2 cut(s) 112, 211
BstMBI GATC 2 cut(s) 109, 208
BstMWI GCNNNNNNNGC 2 cut(s) 23, 377
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 128
Cfr42I CCGCGG 1 cut(s) 309
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 368
CviJI RGCY 7 cut(s) 61, 130, 167, 189, 350, 391, 417
CviKI_1 RGCY 7 cut(s) 61, 130, 167, 189, 350, 391, 417
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 111, 210
DpnII GATC 2 cut(s) 109, 208
Eco130I CCWWGG 2 cut(s) 27, 190
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 27, 190
ErhI CCWWGG 2 cut(s) 27, 190
FaeI CATG 1 cut(s) 371
FatI CATG 1 cut(s) 367
FauI CCCGC 1 cut(s) 301
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 24, 306
Fsp4HI GCNGC 2 cut(s) 24, 306
FspBI CTAG 1 cut(s) 392
GluI GCNGC 2 cut(s) 24, 306
HaeIII GGCC 1 cut(s) 130
Hin1II CATG 1 cut(s) 371
HindIII AAGCTT 1 cut(s) 348
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 297, 411
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 17, 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 377
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 371
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 2 cut(s) 109, 208
LpnPI CCDG 3 cut(s) 98, 303, 330
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 111, 210
MboI GATC 2 cut(s) 109, 208
MboII GAAGA 1 cut(s) 78
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 109
MluCI AATT 4 cut(s) 48, 71, 173, 221
MnlI CCTC 2 cut(s) 4, 290
MspA1I CMGCKG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 23, 377
NdeII GATC 2 cut(s) 109, 208
NlaIII CATG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 2 cut(s) 25, 307
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 128
PsrI GAACNNNNNNTAC 2 cut(s) 281, 313
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacII CCGCGG 1 cut(s) 309
SatI GCNGC 2 cut(s) 24, 306
Sau3AI GATC 2 cut(s) 109, 208
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 318
SetI ASST 8 cut(s) 15, 63, 69, 98, 169, 352, 397, 419
SfcI CTRYAG 1 cut(s) 123
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
Sse9I AATT 4 cut(s) 48, 71, 173, 221
SsiI CCGC 3 cut(s) 306, 308, 399
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 27, 190
TaaI ACNGT 2 cut(s) 297, 411
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 63, 150
TasI AATT 4 cut(s) 48, 71, 173, 221
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 308
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 356, 374
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 387
XapI RAATTY 3 cut(s) 71, 173, 221
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.