RLG00000009164

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000151
Physical Location & Seq
Forward (+)
47892079 .. 47893596
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009164

Sequence Viewer

Length: 945 bp
ATGTGTGGCTCCTTTAACCAAAAGCAGCTAGATTTGGTAATTCTGACAGGTCTTGACAACAAATTTGAAAACTATGCATCCCCTGAACTAAACAATGACATCGGACAATATCCATTTTGGCAGAGAAAAGAAATGGAGTATGTTAAAGAACTTGTTACCAAAGGAATTGCAGAAAAGCTTGACATAGACCTTTTGTTACCTTCCAACTCCTTTCACATTGCGGATCTTGGTTGCTCTGTTGGTCCTAATACATTTTCTTCAGTTGAAAACATACTTGAAGCTGTACAGCTCAAGTTTCAAAGCCAAGGACTCATGAATCACCGAATCCCTGAATTTCAAGTTTTCTTCAATGATCATACCCCAAATGATTTTAACTTGCTCTTCAAATCCCTCCCTTCCAACAGGCAATACTATGCTGTGGGAGTTCCAGTCCGGCTTGGAATAAAGGACGGATTCATTACCTGGGTTCGATGTACTGATGAAGTAGTGAGGGCTTATAAAGCTCAATATTCTGAGAATATGGAGTCTTTCCTGCATGCTAGGGCACAAGAACTTGTGTATGGAGGACTAATGGTACTTATCATTCCTGGCTACCCACAGGGGATTAGTGAAGAGAAACTAGATTCATTCAATATACCAATGTATTCCGTCTGCCCCCAAGAACTCGAAGCAGTTGTAGAACAAAATGGATCTTTTAGCATAGAGACATTGGAGACAAATCAGACAATACCTCATGTCTTAGCTGATGATGCTGTCTTAAATGCAAAACAACTTGCAGCTCATGGAAGAGCCGTCTTGGAGGGACTCATCAAACAGCAGTTTGGAAAAGAAATCGCAGATGAGCTCTTCGACTTGTATGGCAAGAAAATGGAGGAAGAACTCTCCATTTTTAAGCAAAGGAAGACAACTAACTTTCTTGTCGTGCTTAAGCGCAAGGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

315

Amino Acids

35.66

Weight (kDa)

5.21

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 60 - 143 2.1e-24 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 159 - 198 4e-10 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 202 - 311 1.3e-24 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AciI CCGC 1 cut(s) 221
AclWI GGATC 2 cut(s) 231, 697
AcsI RAATTY 2 cut(s) 62, 332
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 285, 475, 576
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 8 cut(s) 68, 266, 278, 299, 338, 349, 385, 631
AjnI CCWGG 2 cut(s) 461, 586
AluBI AGCT 8 cut(s) 28, 178, 281, 289, 503, 743, 779, 844
AluI AGCT 8 cut(s) 28, 178, 281, 289, 503, 743, 779, 844
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 2 cut(s) 698, 707
AlwI GGATC 2 cut(s) 231, 697
ApeKI GCWGC 2 cut(s) 25, 776
ApoI RAATTY 2 cut(s) 62, 332
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 1 cut(s) 846
BbvI GCAGC 2 cut(s) 37, 788
BceAI ACGGC 1 cut(s) 776
BciT130I CCWGG 2 cut(s) 463, 588
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 698, 707
BfaI CTAG 3 cut(s) 29, 540, 620
BfrI CTTAAG 1 cut(s) 926
BisI GCNGC 2 cut(s) 26, 777
BlsI GCNGC 2 cut(s) 27, 778
Bme1390I CCNGG 2 cut(s) 463, 588
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 463, 588
BmsI GCATC 2 cut(s) 86, 739
BpiI GAAGAC 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 304, 462
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 2 cut(s) 463, 588
BseDI CCNNGG 2 cut(s) 304, 462
BseGI GGATG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 428
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 2 cut(s) 37, 788
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 1 cut(s) 816
BsmAI GTCTC 2 cut(s) 698, 707
BsmFI GGGAC 1 cut(s) 816
Bsp1286I GDGCHC 2 cut(s) 547, 846
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 223, 352, 689
BspACI CCGC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 505
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 2 cut(s) 231, 697
BspQI GCTCTTC 3 cut(s) 386, 781, 851
BspTI CTTAAG 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 216
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 304, 462
BssMI GATC 3 cut(s) 223, 352, 689
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 463, 588
Bst6I CTCTTC 4 cut(s) 386, 606, 781, 851
BstAFI CTTAAG 1 cut(s) 926
BstAUI TGTACA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 513, 739
BstF5I GGATG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 3 cut(s) 226, 355, 692
BstMAI GTCTC 2 cut(s) 698, 707
BstMBI GATC 3 cut(s) 223, 352, 689
BstMWI GCNNNNNNNGC 2 cut(s) 500, 749
BstNI CCWGG 2 cut(s) 463, 588
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 461, 586
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 37, 788
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 2 cut(s) 223, 689
BstYI RGATCY 2 cut(s) 223, 689
BtsCI GGATG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 537
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 933
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 284, 474, 575
CviAII CATG 4 cut(s) 313, 536, 734, 782
CviQI GTAC 3 cut(s) 284, 474, 575
DdeI CTNAG 2 cut(s) 513, 739
DpnI GATC 3 cut(s) 225, 354, 691
DpnII GATC 3 cut(s) 223, 352, 689
Eam1104I CTCTTC 4 cut(s) 386, 606, 781, 851
EarI CTCTTC 4 cut(s) 386, 606, 781, 851
Ecl136II GAGCTC 1 cut(s) 844
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 461, 586
EcoT14I CCWWGG 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 846
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 4 cut(s) 316, 539, 737, 785
FaqI GGGAC 1 cut(s) 816
FatI CATG 4 cut(s) 312, 535, 733, 781
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 26, 777
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 2 cut(s) 26, 777
FspBI CTAG 3 cut(s) 29, 540, 620
GlaI GCGC 1 cut(s) 932
GluI GCNGC 2 cut(s) 26, 777
HapII CCGG 1 cut(s) 433
HhaI GCGC 1 cut(s) 933
Hin1II CATG 4 cut(s) 316, 539, 737, 785
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 7 cut(s) 309, 316, 324, 453, 524, 623, 804
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 45, 104, 514, 723
Hpy188III TCNNGA 2 cut(s) 53, 313
HpyAV CCTTC 2 cut(s) 210, 405
HpyCH4V TGCA 5 cut(s) 77, 170, 535, 764, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 749
HpyF3I CTNAG 2 cut(s) 513, 739
Hsp92II CATG 4 cut(s) 316, 539, 737, 785
HspAI GCGC 1 cut(s) 931
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 223, 352, 689
LguI GCTCTTC 3 cut(s) 386, 781, 851
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 2 cut(s) 37, 788
LweI GCATC 2 cut(s) 86, 739
MaeI CTAG 3 cut(s) 29, 540, 620
MaeIII GTNAC 2 cut(s) 154, 195
MalI GATC 3 cut(s) 225, 354, 691
MboI GATC 3 cut(s) 223, 352, 689
MboII GAAGA 8 cut(s) 249, 337, 373, 623, 798, 838, 887, 913
MflI RGATCY 2 cut(s) 223, 689
MhlI GDGCHC 2 cut(s) 547, 846
MluCI AATT 4 cut(s) 39, 62, 165, 332
MlyI GAGTC 3 cut(s) 303, 533, 798
MmeI TCCRAC 2 cut(s) 228, 423
MnlI CCTC 6 cut(s) 401, 483, 557, 741, 793, 865
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 6 cut(s) 15, 144, 372, 758, 891, 927
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 2 cut(s) 463, 588
MvaI CCWGG 2 cut(s) 463, 588
MwoI GCNNNNNNNGC 2 cut(s) 500, 749
NdeII GATC 3 cut(s) 223, 352, 689
NlaIII CATG 4 cut(s) 316, 539, 737, 785
NlaIV GGNNCC 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 539
PaeI GCATGC 1 cut(s) 539
PagI TCATGA 1 cut(s) 312
PciSI GCTCTTC 3 cut(s) 386, 781, 851
PfeI GAWTC 4 cut(s) 316, 324, 453, 623
PkrI GCNGC 2 cut(s) 27, 778
PleI GAGTC 3 cut(s) 303, 532, 798
PpsI GAGTC 3 cut(s) 303, 532, 798
PsiI TTATAA 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 2 cut(s) 461, 586
PspGI CCWGG 2 cut(s) 461, 586
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 223, 689
RsaI GTAC 3 cut(s) 285, 475, 576
RsaNI GTAC 3 cut(s) 284, 474, 575
SacI GAGCTC 1 cut(s) 846
SapI GCTCTTC 3 cut(s) 386, 781, 851
SaqAI TTAA 6 cut(s) 15, 144, 372, 758, 891, 927
SatI GCNGC 2 cut(s) 26, 777
Sau3AI GATC 3 cut(s) 223, 352, 689
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 3 cut(s) 303, 533, 798
ScrFI CCNGG 2 cut(s) 463, 588
SduI GDGCHC 2 cut(s) 547, 846
SfaNI GCATC 2 cut(s) 86, 739
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 290, 926
SmoI CTYRAG 2 cut(s) 290, 926
SphI GCATGC 1 cut(s) 539
Sse9I AATT 4 cut(s) 39, 62, 165, 332
SsiI CCGC 1 cut(s) 221
SspI AATATT 1 cut(s) 509
SspMI CTAG 3 cut(s) 29, 540, 620
SstI GAGCTC 1 cut(s) 846
StyD4I CCNGG 2 cut(s) 461, 586
StyI CCWWGG 1 cut(s) 304
TaqI TCGA 3 cut(s) 469, 666, 849
TasI AATT 4 cut(s) 39, 62, 165, 332
TatI WGTACW 2 cut(s) 283, 473
TfiI GAWTC 4 cut(s) 316, 324, 453, 623
Tru1I TTAA 6 cut(s) 15, 144, 372, 758, 891, 927
Tru9I TTAA 6 cut(s) 15, 144, 372, 758, 891, 927
TseI GCWGC 2 cut(s) 25, 776
TspDTI ATGAA 4 cut(s) 329, 445, 495, 615
TspGWI ACGGA 2 cut(s) 465, 637
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 2 cut(s) 62, 332
XceI RCATGY 1 cut(s) 539
XspI CTAG 3 cut(s) 29, 540, 620
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.