RLG00000023105

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000151
Physical Location & Seq
Forward (+)
18160188 .. 18164053
3866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023105

Sequence Viewer

Length: 1299 bp
ATGTTTCTAATAATTGATTCATCTCAACTTGGCTTCCAGCTCACAATAGGTGGCTCTGATAATTGTTGCCTTGATTGGGTATTCAATCTTGGAGTTGAAATCCCACTCGAACAGATTCCAATAGTCCAAGAGGAAATAACTCAATGTGATGAACCAGTTTCAAAGAAACTGTGTGCTTACCCATCATGGACTACACACAATCAACAAGAGCTATTAGATTGCAAAACACCAGCAGAGGTTTTAAAGAGCTTGGAAAAGAAGACATTTGATGTAGTATTCAAACCTGAAAACCTGAACAAGAAAGGAGTAATTGATGCTGCCAAAGAACTTCTAAATAAGGCGATTGCAGAAAAGCTTGACATTGAAACATTTTCATCTGCCAACTCCTTTCACATTGCAGATTTGGGTTGCTCAGTTGGGCCCAATACATTTTTGGCAGTTGAAAATATACTTGAAGCTGTGCTATTCAAGTATCAAAGCCGAGGGCTGAATTGTCAAATCCCTGAATTTCAAGTCTTCTTTAATGATCATACCTCAAATGACTTCAACATGCTCTTCAATTCCCTCCCTCAGAATAGGCAATACCATGTTGCGGGTTTGCCCGGTTCTTTCTATGGTCGAATACTCCCCAATGCTTCTATCCACTTTTTCCACTCTTCTATTTCCCTTCATTGGCTTTCTAGAGTACCAAAAGATGTAACAGACAGCAATTCCCCTGCTTGGAATAAAGGGCGAATACATTACTTAGACTCCACAGATGAAGTAGTGAGGGCTTACGAAGCGCAGTATGCCGAGGACATGGAGTGCTTTCTGCATGCCAGGGCACAAGAGACAGTACATGGAGGACTGATGGTAATTACTACTCATGGCTACCCAGCTGATACACCACCTTCTCATTCTTGGGCAAATATCATTTATCAAATTTTAGGATCTTGCCTCATTGACATGGCTAGGAAGGGAGTAGTCAGCGAGGAGAAACTAGATTCATTTAATGTACCTATATACTATGTGTGTCCCCGAGAGCTGGAAGCTGCTGTAGAACGAAATGGATGTTTTAGCATAGAGATAATGGAACACTTGCCTACCGTGATGGAACAAGATACTATTTCAAAAAATAGCAAACTCATTGTATCTCATACGAGAGCCGTCATGGAGGGACTCTTCAAGCAGCACTTCGGAGAAGAAATCATAGATGAGCTCTTCGACTTGTTTCTCAAGAAAGTTGAAGAGCAGCACTCTGCATTTGAGTCAGGGAAGGTAGTGGACATCCTCATTGCGCTTAAACGCAAGGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

433

Amino Acids

48.75

Weight (kDa)

5.17

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 119 - 429 1.6e-107 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 593
AclWI GGATC 1 cut(s) 937
AcsI RAATTY 2 cut(s) 506, 921
AfaI GTAC 3 cut(s) 687, 837, 996
AfiI CCNNNNNNNGG 5 cut(s) 76, 592, 672, 720, 1024
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 9 cut(s) 40, 211, 249, 355, 458, 878, 1024, 1031, 1198
AluI AGCT 9 cut(s) 40, 211, 249, 355, 458, 878, 1024, 1031, 1198
Alw21I GWGCWC 1 cut(s) 1200
Alw26I GTCTC 1 cut(s) 824
AlwI GGATC 1 cut(s) 937
Ama87I CYCGRG 1 cut(s) 1017
AoxI GGCC 1 cut(s) 419
ApaI GGGCCC 1 cut(s) 423
ApeKI GCWGC 4 cut(s) 317, 1031, 1168, 1231
ApoI RAATTY 2 cut(s) 506, 921
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 2 cut(s) 784, 1279
AspS9I GGNCC 2 cut(s) 419, 420
AsuC2I CCSGG 1 cut(s) 603
AvaI CYCGRG 1 cut(s) 1017
BaeGI GKGCMC 2 cut(s) 423, 826
BanII GRGCYC 2 cut(s) 423, 1200
BbsI GAAGAC 2 cut(s) 266, 508
Bbv12I GWGCWC 1 cut(s) 1200
BbvI GCAGC 4 cut(s) 304, 1018, 1180, 1243
BccI CCATC 3 cut(s) 190, 844, 1084
BceAI ACGGC 1 cut(s) 1130
BciT130I CCWGG 1 cut(s) 820
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 824
BfaI CTAG 3 cut(s) 681, 951, 980
BfmI CTRYAG 1 cut(s) 1035
BisI GCNGC 4 cut(s) 318, 1032, 1169, 1232
BlsI GCNGC 4 cut(s) 319, 1033, 1170, 1233
Bme1390I CCNGG 2 cut(s) 603, 820
BmeT110I CYCGRG 1 cut(s) 1017
BmgT120I GGNCC 2 cut(s) 419, 420
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 2 cut(s) 603, 820
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 266, 508
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpuEI CTTGAG 1 cut(s) 1199
BpuMI CCSGG 1 cut(s) 603
BsaJI CCNNGG 3 cut(s) 481, 792, 819
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 592, 672, 720, 1024
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 2 cut(s) 393, 1272
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 3 cut(s) 481, 792, 819
BseGI GGATG 2 cut(s) 1055, 1266
BseLI CCNNNNNNNGG 5 cut(s) 76, 592, 672, 720, 1024
BseMI GCAATG 2 cut(s) 393, 1272
BseMII CTCAG 2 cut(s) 426, 584
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 986
BseSI GKGCMC 2 cut(s) 423, 826
BseXI GCAGC 4 cut(s) 304, 1018, 1180, 1243
BseYI CCCAGC 1 cut(s) 874
BshFI GGCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 1200
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 2 cut(s) 999, 1170
BslI CCNNNNNNNGG 5 cut(s) 76, 592, 672, 720, 1024
BsmAI GTCTC 1 cut(s) 824
BsmFI GGGAC 2 cut(s) 999, 1170
BsnI GGCC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 1017
Bsp120I GGGCCC 1 cut(s) 419
Bsp1286I GDGCHC 3 cut(s) 423, 826, 1200
Bsp143I GATC 2 cut(s) 526, 929
BspACI CCGC 1 cut(s) 593
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 2 cut(s) 425, 583
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 1 cut(s) 937
BspQI GCTCTTC 3 cut(s) 560, 1205, 1221
BsrDI GCAATG 2 cut(s) 393, 1272
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 481, 792, 819
BssMI GATC 2 cut(s) 526, 929
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 3 cut(s) 171, 835, 1087
Bst6I CTCTTC 5 cut(s) 560, 661, 1166, 1205, 1221
BstC8I GCNNGC 1 cut(s) 816
BstDEI CTNAG 3 cut(s) 412, 570, 745
BstF5I GGATG 2 cut(s) 1055, 1266
BstHHI GCGC 2 cut(s) 784, 1279
BstKTI GATC 2 cut(s) 529, 932
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 2 cut(s) 526, 929
BstMWI GCNNNNNNNGC 2 cut(s) 779, 788
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 2 cut(s) 553, 818
BstSCI CCNGG 2 cut(s) 601, 818
BstSFI CTRYAG 1 cut(s) 1035
BstSLI GKGCMC 2 cut(s) 423, 826
BstV1I GCAGC 4 cut(s) 304, 1018, 1180, 1243
BstV2I GAAGAC 2 cut(s) 266, 508
BstX2I RGATCY 1 cut(s) 929
BstYI RGATCY 1 cut(s) 929
BsuRI GGCC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 1055, 1266
Cac8I GCNNGC 1 cut(s) 816
CfoI GCGC 2 cut(s) 784, 1279
Cfr13I GGNCC 2 cut(s) 419, 420
Csp6I GTAC 3 cut(s) 686, 836, 995
CviAII CATG 9 cut(s) 186, 550, 587, 799, 815, 839, 866, 946, 1150
CviQI GTAC 3 cut(s) 686, 836, 995
DdeI CTNAG 3 cut(s) 412, 570, 745
DpnI GATC 2 cut(s) 528, 931
DpnII GATC 2 cut(s) 526, 929
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 5 cut(s) 560, 661, 1166, 1205, 1221
EarI CTCTTC 5 cut(s) 560, 661, 1166, 1205, 1221
Ecl136II GAGCTC 1 cut(s) 1198
Eco24I GRGCYC 2 cut(s) 423, 1200
Eco53kI GAGCTC 1 cut(s) 1198
Eco88I CYCGRG 1 cut(s) 1017
EcoICRI GAGCTC 1 cut(s) 1198
EcoRII CCWGG 1 cut(s) 818
EcoT38I GRGCYC 2 cut(s) 423, 1200
FaeI CATG 9 cut(s) 189, 553, 590, 802, 818, 842, 869, 949, 1153
FalI AAGNNNNNCTT 2 cut(s) 1157, 1189
FaqI GGGAC 2 cut(s) 999, 1170
FatI CATG 9 cut(s) 185, 549, 586, 798, 814, 838, 865, 945, 1149
FauI CCCGC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 4 cut(s) 318, 1032, 1169, 1232
FokI GGATG 2 cut(s) 1062, 1253
FriOI GRGCYC 2 cut(s) 423, 1200
Fsp4HI GCNGC 4 cut(s) 318, 1032, 1169, 1232
FspBI CTAG 3 cut(s) 681, 951, 980
GlaI GCGC 2 cut(s) 783, 1278
GluI GCNGC 4 cut(s) 318, 1032, 1169, 1232
GsaI CCCAGC 1 cut(s) 878
HaeIII GGCC 1 cut(s) 421
HapII CCGG 1 cut(s) 603
HhaI GCGC 2 cut(s) 784, 1279
Hin1II CATG 9 cut(s) 189, 553, 590, 802, 818, 842, 869, 949, 1153
Hin6I GCGC 2 cut(s) 782, 1277
HinP1I GCGC 2 cut(s) 782, 1277
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 17, 115, 749, 983, 1158, 1247
HpaII CCGG 1 cut(s) 603
Hpy166II GTNNAC 1 cut(s) 1264
Hpy188I TCNGA 3 cut(s) 58, 573, 1178
Hpy188III TCNNGA 2 cut(s) 681, 1216
Hpy8I GTNNAC 1 cut(s) 1264
HpyAV CCTTC 4 cut(s) 677, 900, 949, 1249
HpyCH4III ACNGT 3 cut(s) 171, 835, 1087
HpyCH4V TGCA 5 cut(s) 222, 347, 398, 814, 1241
HpyF10VI GCNNNNNNNGC 2 cut(s) 779, 788
HpyF3I CTNAG 3 cut(s) 412, 570, 745
Hsp92II CATG 9 cut(s) 189, 553, 590, 802, 818, 842, 869, 949, 1153
HspAI GCGC 2 cut(s) 782, 1277
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 2 cut(s) 526, 929
LguI GCTCTTC 3 cut(s) 560, 1205, 1221
Lsp1109I GCAGC 4 cut(s) 304, 1018, 1180, 1243
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 681, 951, 980
MaeIII GTNAC 1 cut(s) 697
MalI GATC 2 cut(s) 528, 931
MboI GATC 2 cut(s) 526, 929
MboII GAAGA 8 cut(s) 271, 508, 547, 648, 1153, 1192, 1193, 1238
MflI RGATCY 1 cut(s) 929
MhlI GDGCHC 3 cut(s) 423, 826, 1200
MlyI GAGTC 3 cut(s) 743, 1152, 1256
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 4 cut(s) 242, 522, 990, 1281
MslI CAYNNNNRTG 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 603, 820
MvaI CCWGG 1 cut(s) 820
MwoI GCNNNNNNNGC 2 cut(s) 779, 788
NciI CCSGG 1 cut(s) 603
NdeII GATC 2 cut(s) 526, 929
NlaIII CATG 9 cut(s) 189, 553, 590, 802, 818, 842, 869, 949, 1153
NlaIV GGNNCC 1 cut(s) 421
NmeAIII GCCGAG 2 cut(s) 506, 817
NspI RCATGY 2 cut(s) 553, 818
PaeI GCATGC 1 cut(s) 818
PciSI GCTCTTC 3 cut(s) 560, 1205, 1221
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 17, 115, 983
PkrI GCNGC 4 cut(s) 319, 1033, 1170, 1233
PleI GAGTC 3 cut(s) 743, 1152, 1255
PpsI GAGTC 3 cut(s) 743, 1152, 1255
Psp124BI GAGCTC 1 cut(s) 1200
Psp6I CCWGG 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 1 cut(s) 421
PspOMI GGGCCC 1 cut(s) 419
PspPI GGNCC 2 cut(s) 419, 420
PsuI RGATCY 1 cut(s) 929
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 687, 837, 996
RsaNI GTAC 3 cut(s) 686, 836, 995
RseI CAYNNNNRTG 1 cut(s) 944
SacI GAGCTC 1 cut(s) 1200
SapI GCTCTTC 3 cut(s) 560, 1205, 1221
SaqAI TTAA 4 cut(s) 242, 522, 990, 1281
SatI GCNGC 4 cut(s) 318, 1032, 1169, 1232
Sau3AI GATC 2 cut(s) 526, 929
Sau96I GGNCC 2 cut(s) 419, 420
SchI GAGTC 3 cut(s) 743, 1152, 1256
ScrFI CCNGG 2 cut(s) 603, 820
SduI GDGCHC 3 cut(s) 423, 826, 1200
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 1035
SmiMI CAYNNNNRTG 1 cut(s) 944
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
SphI GCATGC 1 cut(s) 818
SsiI CCGC 1 cut(s) 593
SspMI CTAG 3 cut(s) 681, 951, 980
SstI GAGCTC 1 cut(s) 1200
StyD4I CCNGG 2 cut(s) 601, 818
TaaI ACNGT 3 cut(s) 171, 835, 1087
TaqI TCGA 3 cut(s) 108, 619, 1203
TatI WGTACW 1 cut(s) 835
TfiI GAWTC 3 cut(s) 17, 115, 983
Tru1I TTAA 4 cut(s) 242, 522, 990, 1281
Tru9I TTAA 4 cut(s) 242, 522, 990, 1281
TseI GCWGC 4 cut(s) 317, 1031, 1168, 1231
TspDTI ATGAA 6 cut(s) 9, 165, 363, 659, 774, 975
XapI RAATTY 2 cut(s) 506, 921
XbaI TCTAGA 1 cut(s) 680
XceI RCATGY 2 cut(s) 553, 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 3 cut(s) 681, 951, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.