RchiOBHm_Chr7g0179031

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Forward (+)
1487041 .. 1488853
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15955

Sequence Viewer

Length: 1089 bp
ATGGCAGCAGATGATACCAGTAATGTATTTGAAGCACATCCAATGGAAGGTGGAGATGGCCCCAACAGCTATGCCAAGAACTCCATTGTGCAGAGAGGAGTTGTGGATGCAGCCAAAGAACTTGTAAAAAGGGCAATTGTAGAAACACTCAACATAGACATCTTGTCATCTTCAAACTCCTTTAAAATTGCAGATCTGGGTTGCTCTGTTGGGCCTAATACATTTTATGCAGTTGAAAACATGATTGAAGCTGTGGAGTTCAAGTATCAAAGCCAGGGGCAGAATTCACAAATCCCAGAATTTCAAGTCTTGTTTAATGACCATGCCTCAAATGACTTTAACATGCTCTTCATATCCTTCCCTGAGAACAAACGATACTATGCAGCCGGTGTGCCTGGTTCTTTCTATAGTAGAGTATTTCCTAATGCTTCCATCCACTTAGTTCACTCTTCCTATGCCATTCATTGGCTTTCTAGAGTACCGAAAGAGGTGTTGGACAAACACAGTCCTGCTTGGAATAAAGGAAAAATTCATTACTTAAATGCCAGAGATGAAGTAGTAAGGGCTTATGAAGCTCAATATGTCGAGGACATGGAGTGCTTCCTGCATGCTAGAGCACAAGAGATTGTGTATGGAGGACTAATGGTACTTATCTTTCCGGGCCGCCCCAATGGCTCCGCTAGTTCTCAAGCTTGGGCAAATATGAGCTTCCAAGTTTTGGGATCTTGCCTCATGGACTTGGTTAGAAAGGGAGTTATTAGCGAAGAGAAAGTAGATTCATCCAACATGCCTATATATTCCATGACTCCTCAAGAACTTGAAGATGCTGTGAAACAGAATGGATGCTTTAGCGTAGAGATAATGGCAAACTTACCTCATCCCTTGGTAGATGACACTCTTTCAGTACCGCAACTACTTGCCTCTCACCTGAGAACTGGCGTGGAGGGGATGGTCAAGAAGCAATTTGGAGAAGAAATATTAGATGAGCTCTTCGACTTGTATCGGGAAAAATGTGAGCATGATGCGCTCAACTTTCTTGCTGTGCTTGGACACAACTTTATTGTTGTTCTTAGACGTAAGGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

362

Amino Acids

40.45

Weight (kDa)

5.25

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 50 - 359 4.1e-103 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 465, 718
AciI CCGC 3 cut(s) 664, 678, 908
AclWI GGATC 1 cut(s) 730
AcsI RAATTY 3 cut(s) 283, 299, 528
AfaI GTAC 3 cut(s) 480, 648, 906
AfiI CCNNNNNNNGG 3 cut(s) 47, 465, 718
AgsI TTSAA 7 cut(s) 32, 174, 236, 248, 262, 305, 821
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 273, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 6 cut(s) 69, 251, 575, 692, 708, 988
AluI AGCT 6 cut(s) 69, 251, 575, 692, 708, 988
Alw21I GWGCWC 2 cut(s) 619, 990
AlwI GGATC 1 cut(s) 730
AoxI GGCC 3 cut(s) 58, 212, 661
ApeKI GCWGC 3 cut(s) 5, 110, 383
ApoI RAATTY 3 cut(s) 283, 299, 528
AspLEI GCGC 1 cut(s) 1027
AspS9I GGNCC 3 cut(s) 59, 212, 661
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 1 cut(s) 917
BanII GRGCYC 1 cut(s) 990
Bbv12I GWGCWC 2 cut(s) 619, 990
BbvI GCAGC 3 cut(s) 17, 122, 395
BccI CCATC 3 cut(s) 50, 440, 943
BciT130I CCWGG 2 cut(s) 275, 396
BcnI CCSGG 1 cut(s) 660
BfaI CTAG 3 cut(s) 474, 612, 681
BfmI CTRYAG 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 672
BglII AGATCT 1 cut(s) 193
BisI GCNGC 4 cut(s) 6, 111, 384, 664
BlsI GCNGC 4 cut(s) 7, 112, 385, 665
Bme1390I CCNGG 3 cut(s) 275, 396, 660
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 59, 212, 661
BmiI GGNNCC 2 cut(s) 61, 676
BmrFI CCNGG 3 cut(s) 275, 396, 660
BmsI GCATC 4 cut(s) 97, 814, 833, 1012
BpuEI CTTGAG 2 cut(s) 672, 795
BpuMI CCSGG 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 274, 882
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 465, 718
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 18, 940
BseBI CCWGG 2 cut(s) 275, 396
BseDI CCNNGG 2 cut(s) 274, 882
BseGI GGATG 7 cut(s) 37, 112, 432, 779, 848, 877, 954
BseLI CCNNNNNNNGG 3 cut(s) 47, 465, 718
BseMII CTCAG 2 cut(s) 354, 920
BseNI ACTGG 2 cut(s) 18, 940
BseRI GAGGAG 2 cut(s) 111, 798
BseXI GCAGC 3 cut(s) 17, 122, 395
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 3 cut(s) 60, 214, 663
BsiHKAI GWGCWC 2 cut(s) 619, 990
BsiSI CCGG 2 cut(s) 387, 659
BslI CCNNNNNNNGG 3 cut(s) 47, 465, 718
BsnI GGCC 3 cut(s) 60, 214, 663
Bsp1286I GDGCHC 2 cut(s) 619, 990
Bsp143I GATC 2 cut(s) 193, 722
BspACI CCGC 3 cut(s) 664, 678, 908
BspANI GGCC 3 cut(s) 60, 214, 663
BspCNI CTCAG 2 cut(s) 355, 921
BspLI GGNNCC 2 cut(s) 61, 676
BspPI GGATC 1 cut(s) 730
BspQI GCTCTTC 2 cut(s) 353, 995
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 2 cut(s) 18, 940
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 274, 882
BssMI GATC 2 cut(s) 193, 722
BssT1I CCWWGG 1 cut(s) 882
Bst2UI CCWGG 2 cut(s) 275, 396
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 4 cut(s) 353, 454, 759, 995
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 363, 439, 929, 1070
BstF5I GGATG 7 cut(s) 37, 112, 432, 779, 848, 877, 954
BstHHI GCGC 1 cut(s) 1027
BstKTI GATC 2 cut(s) 196, 725
BstMBI GATC 2 cut(s) 193, 722
BstMWI GCNNNNNNNGC 4 cut(s) 66, 572, 672, 1024
BstNI CCWGG 2 cut(s) 275, 396
BstNSI RCATGY 3 cut(s) 346, 611, 790
BstSCI CCNGG 3 cut(s) 273, 394, 658
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 17, 122, 395
BstX2I RGATCY 2 cut(s) 193, 722
BstYI RGATCY 2 cut(s) 193, 722
BsuRI GGCC 3 cut(s) 60, 214, 663
BtsCI GGATG 7 cut(s) 37, 112, 432, 779, 848, 877, 954
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 1 cut(s) 1027
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 3 cut(s) 59, 212, 661
Csp6I GTAC 3 cut(s) 479, 647, 905
CviAII CATG 9 cut(s) 241, 323, 343, 592, 608, 733, 787, 802, 1019
CviQI GTAC 3 cut(s) 479, 647, 905
DdeI CTNAG 4 cut(s) 363, 439, 929, 1070
DpnI GATC 2 cut(s) 195, 724
DpnII GATC 2 cut(s) 193, 722
DraI TTTAAA 1 cut(s) 184
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 4 cut(s) 353, 454, 759, 995
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 4 cut(s) 353, 454, 759, 995
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 1 cut(s) 882
Eco24I GRGCYC 1 cut(s) 990
Eco53kI GAGCTC 1 cut(s) 988
EcoICRI GAGCTC 1 cut(s) 988
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 273, 394
EcoT14I CCWWGG 1 cut(s) 882
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 9 cut(s) 244, 326, 346, 595, 611, 736, 790, 805, 1022
FatI CATG 9 cut(s) 240, 322, 342, 591, 607, 732, 786, 801, 1018
Fnu4HI GCNGC 4 cut(s) 6, 111, 384, 664
FokI GGATG 7 cut(s) 24, 119, 419, 766, 855, 864, 961
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 4 cut(s) 6, 111, 384, 664
FspBI CTAG 3 cut(s) 474, 612, 681
GlaI GCGC 1 cut(s) 1026
GluI GCNGC 4 cut(s) 6, 111, 384, 664
HaeIII GGCC 3 cut(s) 60, 214, 663
HapII CCGG 2 cut(s) 387, 659
HhaI GCGC 1 cut(s) 1027
Hin1II CATG 9 cut(s) 244, 326, 346, 595, 611, 736, 790, 805, 1022
Hin6I GCGC 1 cut(s) 1025
HinP1I GCGC 1 cut(s) 1025
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 2 cut(s) 776, 805
HpaII CCGG 2 cut(s) 387, 659
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 1 cut(s) 445
Hpy188III TCNNGA 4 cut(s) 474, 812, 955, 1004
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 41, 367
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 1075
HpyCH4V TGCA 6 cut(s) 91, 110, 191, 230, 383, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 572, 672, 1024
HpyF3I CTNAG 4 cut(s) 363, 439, 929, 1070
HpySE526I ACGT 1 cut(s) 1075
Hsp92II CATG 9 cut(s) 244, 326, 346, 595, 611, 736, 790, 805, 1022
HspAI GCGC 1 cut(s) 1025
Kzo9I GATC 2 cut(s) 193, 722
LguI GCTCTTC 2 cut(s) 353, 995
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 3 cut(s) 17, 122, 395
LweI GCATC 4 cut(s) 97, 814, 833, 1012
MaeI CTAG 3 cut(s) 474, 612, 681
MaeII ACGT 1 cut(s) 1075
MalI GATC 2 cut(s) 195, 724
MboI GATC 2 cut(s) 193, 722
MboII GAAGA 7 cut(s) 162, 340, 441, 776, 833, 982, 983
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 193, 722
MhlI GDGCHC 2 cut(s) 619, 990
MluCI AATT 6 cut(s) 135, 186, 283, 299, 528, 962
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 2 cut(s) 474, 807
MseI TTAA 4 cut(s) 183, 315, 339, 539
MspI CCGG 2 cut(s) 387, 659
MspR9I CCNGG 3 cut(s) 275, 396, 660
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 2 cut(s) 275, 396
MwoI GCNNNNNNNGC 4 cut(s) 66, 572, 672, 1024
NciI CCSGG 1 cut(s) 660
NdeII GATC 2 cut(s) 193, 722
NlaIII CATG 9 cut(s) 244, 326, 346, 595, 611, 736, 790, 805, 1022
NlaIV GGNNCC 2 cut(s) 61, 676
NspI RCATGY 3 cut(s) 346, 611, 790
PaeI GCATGC 1 cut(s) 611
PciSI GCTCTTC 2 cut(s) 353, 995
PfeI GAWTC 1 cut(s) 776
PflMI CCANNNNNTGG 2 cut(s) 465, 718
PkrI GCNGC 4 cut(s) 7, 112, 385, 665
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp124BI GAGCTC 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 273, 394
PspGI CCWGG 2 cut(s) 273, 394
PspN4I GGNNCC 2 cut(s) 61, 676
PspPI GGNCC 3 cut(s) 59, 212, 661
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PsuI RGATCY 2 cut(s) 193, 722
RsaI GTAC 3 cut(s) 480, 648, 906
RsaNI GTAC 3 cut(s) 479, 647, 905
SacI GAGCTC 1 cut(s) 990
SapI GCTCTTC 2 cut(s) 353, 995
SaqAI TTAA 4 cut(s) 183, 315, 339, 539
SatI GCNGC 4 cut(s) 6, 111, 384, 664
Sau3AI GATC 2 cut(s) 193, 722
Sau96I GGNCC 3 cut(s) 59, 212, 661
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 3 cut(s) 275, 396, 660
SduI GDGCHC 2 cut(s) 619, 990
SfaNI GCATC 4 cut(s) 97, 814, 833, 1012
SfcI CTRYAG 1 cut(s) 406
SmlI CTYRAG 2 cut(s) 687, 810
SmoI CTYRAG 2 cut(s) 687, 810
SphI GCATGC 1 cut(s) 611
Sse9I AATT 6 cut(s) 135, 186, 283, 299, 528, 962
SsiI CCGC 3 cut(s) 664, 678, 908
SspI AATATT 1 cut(s) 978
SspMI CTAG 3 cut(s) 474, 612, 681
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 3 cut(s) 273, 394, 658
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 1078
TaqI TCGA 2 cut(s) 585, 993
TasI AATT 6 cut(s) 135, 186, 283, 299, 528, 962
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 1 cut(s) 776
Tru1I TTAA 4 cut(s) 183, 315, 339, 539
Tru9I TTAA 4 cut(s) 183, 315, 339, 539
TseI GCWGC 3 cut(s) 5, 110, 383
TspDTI ATGAA 6 cut(s) 340, 452, 521, 567, 585, 768
Van91I CCANNNNNTGG 2 cut(s) 465, 718
XapI RAATTY 3 cut(s) 283, 299, 528
XbaI TCTAGA 1 cut(s) 473
XceI RCATGY 3 cut(s) 346, 611, 790
XspI CTAG 3 cut(s) 474, 612, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.