Rmu_sc0001021.1_g000003

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001021.1
OG0000151
Physical Location & Seq
Forward (+)
20837 .. 21771
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001021.1_g000003.1.cds

Sequence Viewer

Length: 711 bp
atgggcccaacagctatgccaagaactcaacttaccagaggagttgtgggtgttgctaaagagcttctaaacaaggcaattctagaaaagcttgacatagacatcacgctgttgtccaacacctttcacattgcagatctgggttgctctgttggtccaaatacattttattcagtggaaaatatacttgaagcagtgcagtccaagtatcaaatccaggggcagaattcccaaatcccagaatttcaagttttcttcaatgatcatgctcaaaatgatttcaacatgcttttcaaatccatccctcagaacaggcaatactttgcagttggtgtgcctggttctttccacggccggctatttcctaaagcttcgattcacattgttcactcttcttatgccattcaatggctttctagagtaccagaagcggtagtggacagcagcagttctgcttggaataaaggacgaatccattattcaaattccacagatgaagtaataagggctcatgaaactcaatatagtgaggacatggagtgcttcctgcattccagggcacaagagattatgtatggaggactgatgatgatacttatgattccaggccgccccgatggaactcctcactcccattctcaggcaaatatgaccttacaatttctaggatcatgcctcatggacatggctagaaaggtaactttttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

236

Amino Acids

26.46

Weight (kDa)

6.35

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 408
AciI CCGC 2 cut(s) 431, 610
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 3 cut(s) 226, 242, 484
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 408, 640
AgsI TTSAA 7 cut(s) 191, 248, 259, 283, 295, 407, 483
AjnI CCWGG 4 cut(s) 216, 337, 554, 604
AluBI AGCT 4 cut(s) 14, 64, 91, 371
AluI AGCT 4 cut(s) 14, 64, 91, 371
AlwI GGATC 1 cut(s) 676
AoxI GGCC 3 cut(s) 4, 352, 607
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 3 cut(s) 226, 242, 484
AspS9I GGNCC 3 cut(s) 4, 5, 155
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 2 cut(s) 8, 562
BanII GRGCYC 2 cut(s) 8, 511
BbvI GCAGC 1 cut(s) 456
BccI CCATC 2 cut(s) 308, 611
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 4 cut(s) 218, 339, 556, 606
BclI TGATCA 1 cut(s) 262
BfaI CTAG 4 cut(s) 83, 417, 665, 690
BglII AGATCT 1 cut(s) 136
BisI GCNGC 2 cut(s) 445, 610
BlsI GCNGC 2 cut(s) 446, 611
Bme1390I CCNGG 4 cut(s) 218, 339, 556, 606
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 4, 5, 155
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 218, 339, 556, 606
BsaJI CCNNGG 3 cut(s) 217, 349, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 640
Bse118I RCCGGY 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 4 cut(s) 218, 339, 556, 606
BseDI CCNNGG 3 cut(s) 217, 349, 555
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 408, 640
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 320, 653
BseRI GAGGAG 2 cut(s) 54, 615
BseSI GKGCMC 2 cut(s) 8, 562
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 3 cut(s) 6, 354, 609
BsiEI CGRYCG 1 cut(s) 355
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 408, 640
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 3 cut(s) 6, 354, 609
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 511, 562
Bsp143I GATC 3 cut(s) 136, 262, 668
BspACI CCGC 2 cut(s) 431, 610
BspANI GGCC 3 cut(s) 6, 354, 609
BspCNI CTCAG 2 cut(s) 319, 652
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 217, 349, 555
BssMI GATC 3 cut(s) 136, 262, 668
Bst2UI CCWGG 4 cut(s) 218, 339, 556, 606
Bst6I CTCTTC 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 2 cut(s) 306, 639
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 3 cut(s) 139, 265, 671
BstMBI GATC 3 cut(s) 136, 262, 668
BstMCI CGRYCG 1 cut(s) 355
BstNI CCWGG 4 cut(s) 218, 339, 556, 606
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 4 cut(s) 216, 337, 554, 604
BstSLI GKGCMC 2 cut(s) 8, 562
BstV1I GCAGC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 3 cut(s) 6, 354, 609
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 180, 201
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 4, 5, 155
Csp6I GTAC 1 cut(s) 422
CviAII CATG 7 cut(s) 266, 286, 512, 535, 672, 679, 685
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 2 cut(s) 306, 639
DpnI GATC 3 cut(s) 138, 264, 670
DpnII GATC 3 cut(s) 136, 262, 668
EaeI YGGCCR 1 cut(s) 352
EagI CGGCCG 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
EclXI CGGCCG 1 cut(s) 352
Eco24I GRGCYC 2 cut(s) 8, 511
Eco47I GGWCC 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 4 cut(s) 216, 337, 554, 604
EcoT38I GRGCYC 2 cut(s) 8, 511
FaeI CATG 7 cut(s) 269, 289, 515, 538, 675, 682, 688
FatI CATG 7 cut(s) 265, 285, 511, 534, 671, 678, 684
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 445, 610
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 2 cut(s) 8, 511
Fsp4HI GCNGC 2 cut(s) 445, 610
FspBI CTAG 4 cut(s) 83, 417, 665, 690
GluI GCNGC 2 cut(s) 445, 610
HaeIII GGCC 3 cut(s) 6, 354, 609
HapII CCGG 1 cut(s) 355
Hin1II CATG 7 cut(s) 269, 289, 515, 538, 675, 682, 688
HindIII AAGCTT 2 cut(s) 89, 369
HinfI GANTC 3 cut(s) 376, 471, 601
HpaII CCGG 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 388, 439
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 4 cut(s) 83, 417, 512, 708
Hpy8I GTNNAC 2 cut(s) 388, 439
HpyCH4V TGCA 4 cut(s) 134, 199, 326, 550
HpyF3I CTNAG 2 cut(s) 306, 639
Hsp92II CATG 7 cut(s) 269, 289, 515, 538, 675, 682, 688
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 136, 262, 668
Lsp1109I GCAGC 1 cut(s) 456
MaeI CTAG 4 cut(s) 83, 417, 665, 690
MaeIII GTNAC 1 cut(s) 697
MalI GATC 3 cut(s) 138, 264, 670
MboI GATC 3 cut(s) 136, 262, 668
MboII GAAGA 2 cut(s) 247, 384
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 3 cut(s) 8, 511, 562
MluCI AATT 5 cut(s) 78, 226, 242, 484, 659
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 6 cut(s) 32, 315, 523, 572, 636, 686
MroNI GCCGGC 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 683
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 4 cut(s) 218, 339, 556, 606
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 4 cut(s) 218, 339, 556, 606
NaeI GCCGGC 1 cut(s) 356
NdeII GATC 3 cut(s) 136, 262, 668
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 7 cut(s) 269, 289, 515, 538, 675, 682, 688
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 289
PagI TCATGA 1 cut(s) 511
PctI GAATGC 1 cut(s) 550
PdiI GCCGGC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 376, 471, 601
PflMI CCANNNNNTGG 1 cut(s) 408
PkrI GCNGC 2 cut(s) 446, 611
Psp6I CCWGG 4 cut(s) 216, 337, 554, 604
PspGI CCWGG 4 cut(s) 216, 337, 554, 604
PspN4I GGNNCC 1 cut(s) 6
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 155
PsrI GAACNNNNNNTAC 4 cut(s) 16, 48, 302, 334
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 683
SatI GCNGC 2 cut(s) 445, 610
Sau3AI GATC 3 cut(s) 136, 262, 668
Sau96I GGNCC 3 cut(s) 4, 5, 155
ScrFI CCNGG 4 cut(s) 218, 339, 556, 606
SduI GDGCHC 3 cut(s) 8, 511, 562
SetI ASST 7 cut(s) 16, 66, 93, 125, 373, 656, 699
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 683
Sse9I AATT 5 cut(s) 78, 226, 242, 484, 659
SsiI CCGC 2 cut(s) 431, 610
SspMI CTAG 4 cut(s) 83, 417, 665, 690
StyD4I CCNGG 4 cut(s) 216, 337, 554, 604
TaqI TCGA 1 cut(s) 374
TasI AATT 5 cut(s) 78, 226, 242, 484, 659
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 3 cut(s) 376, 471, 601
TscAI CASTG 2 cut(s) 180, 201
TseI GCWGC 1 cut(s) 444
TspDTI ATGAA 2 cut(s) 510, 528
TspRI CASTG 2 cut(s) 180, 201
Van91I CCANNNNNTGG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 3 cut(s) 226, 242, 484
XbaI TCTAGA 2 cut(s) 82, 416
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 4 cut(s) 83, 417, 665, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.