Rw3G024210

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000151
Physical Location & Seq
Reverse (-)
30985680 .. 30987542
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024210.1

Sequence Viewer

Length: 768 bp
ATGGCAGCAGAGGAAACTGGTAAATGCTCTGAAGCCTATCCAATGAAAGGTGGAGATGGCCCCAGCAACTATGCCAAGAACTCCATCTACCAGAAAGGAGTAATTGATGCTGCCAAAGAACTTCTAAATAAGGCGATTGCAGAAAAGCTTGACATTGAAACATTTTCATCTGCCAACTCCTTTCACATTGCAGATTTGGGTTGCTCAGTTGGGCCCAATACATTTTTGGCGGTTGAAAATATACTTGAAGCTGTGCTATTCAAGTATCAAAGCCGAGGGCTGAATTGTCAAATCCCTGAATTTCAAGTCTTCTTTAATGATCATACCTCAAATGACTTCAACATGCTCTTCAATTCCCTCCCTCAGAATAGGCAATACTATGCTGCAGGTTTGCCTGGTTCTTTCTATGGTCGAATACTCCCCGATGCTTCTATCCACTTTTTTCACTCCTCTATTTCCCTTCATTGGCTTTCTAGAGTACCAAAAGATGTAACAGACAGCAACTCCCCTGCTTGGAATAAAGGGCGAATACATTACTTAGACTCCACAGATGAAGTAGTGAGGGCTTACGAAGCGCAATATGCCGAGGACATGGAGTGCTTTCTGCATGCCAGGGCACAAGAGACAGTACATGGAGGACTGATGGTAATTACTACTCATGGCTACCCAGCTGATACACCACCTTCTCATTCTCGGGCAAATATAATTGATCAAATTTTAGGATCTTGCCTCATTGACATGGCTAGGAAGGTAAGCATTCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

255

Amino Acids

28.29

Weight (kDa)

5.52

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 50 - 253 2.6e-74 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 730
AcsI RAATTY 2 cut(s) 299, 714
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 480, 630
AfiI CCNNNNNNNGG 3 cut(s) 47, 465, 513
AgsI TTSAA 7 cut(s) 158, 236, 248, 262, 305, 340, 352
AjnI CCWGG 2 cut(s) 394, 611
AluBI AGCT 3 cut(s) 148, 251, 671
AluI AGCT 3 cut(s) 148, 251, 671
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 1 cut(s) 730
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 2 cut(s) 58, 212
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 5, 110, 383
ApoI RAATTY 2 cut(s) 299, 714
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 59, 212, 213
AvaI CYCGRG 1 cut(s) 693
BaeGI GKGCMC 2 cut(s) 216, 619
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 3 cut(s) 17, 97, 370
BccI CCATC 3 cut(s) 50, 92, 637
BciT130I CCWGG 2 cut(s) 396, 613
BclI TGATCA 2 cut(s) 319, 709
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 474, 744
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 3 cut(s) 6, 111, 384
BlsI GCNGC 3 cut(s) 7, 112, 385
Bme1390I CCNGG 2 cut(s) 396, 613
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 3 cut(s) 59, 212, 213
BmiI GGNNCC 2 cut(s) 61, 214
BmrFI CCNGG 2 cut(s) 396, 613
BmsI GCATC 2 cut(s) 97, 415
BpiI GAAGAC 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 274, 585, 612
BsaXI ACNNNNNCTCC 4 cut(s) 488, 518, 527, 557
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 465, 513
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 2 cut(s) 396, 613
BseDI CCNNGG 3 cut(s) 274, 585, 612
BseLI CCNNNNNNNGG 3 cut(s) 47, 465, 513
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 219, 377
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 439
BseSI GKGCMC 2 cut(s) 216, 619
BseXI GCAGC 3 cut(s) 17, 97, 370
BseYI CCCAGC 2 cut(s) 62, 667
BshFI GGCC 2 cut(s) 60, 214
BsiHKCI CYCGRG 1 cut(s) 693
BslI CCNNNNNNNGG 3 cut(s) 47, 465, 513
BsmAI GTCTC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 2 cut(s) 60, 214
BsoBI CYCGRG 1 cut(s) 693
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 216, 619
Bsp143I GATC 3 cut(s) 319, 709, 722
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 60, 214
BspCNI CTCAG 2 cut(s) 218, 376
BspLI GGNNCC 2 cut(s) 61, 214
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 1 cut(s) 730
BspQI GCTCTTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 274, 585, 612
BssMI GATC 3 cut(s) 319, 709, 722
Bst2UI CCWGG 2 cut(s) 396, 613
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 205, 363, 538
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 3 cut(s) 322, 712, 725
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 3 cut(s) 319, 709, 722
BstMWI GCNNNNNNNGC 2 cut(s) 572, 581
BstNI CCWGG 2 cut(s) 396, 613
BstNSI RCATGY 2 cut(s) 346, 611
BstSCI CCNGG 2 cut(s) 394, 611
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 2 cut(s) 216, 619
BstV1I GCAGC 3 cut(s) 17, 97, 370
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 722
BstYI RGATCY 1 cut(s) 722
BsuRI GGCC 2 cut(s) 60, 214
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 1 cut(s) 577
Cfr13I GGNCC 3 cut(s) 59, 212, 213
Csp6I GTAC 2 cut(s) 479, 629
CviAII CATG 6 cut(s) 343, 592, 608, 632, 659, 739
CviQI GTAC 2 cut(s) 479, 629
DdeI CTNAG 3 cut(s) 205, 363, 538
DpnI GATC 3 cut(s) 321, 711, 724
DpnII GATC 3 cut(s) 319, 709, 722
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 394, 611
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 6 cut(s) 346, 595, 611, 635, 662, 742
FatI CATG 6 cut(s) 342, 591, 607, 631, 658, 738
FbaI TGATCA 2 cut(s) 319, 709
Fnu4HI GCNGC 3 cut(s) 6, 111, 384
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 6, 111, 384
FspBI CTAG 2 cut(s) 474, 744
GlaI GCGC 1 cut(s) 576
GluI GCNGC 3 cut(s) 6, 111, 384
GsaI CCCAGC 2 cut(s) 66, 671
HaeIII GGCC 2 cut(s) 60, 214
HhaI GCGC 1 cut(s) 577
Hin1II CATG 6 cut(s) 346, 595, 611, 635, 662, 742
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 542
Hpy188I TCNGA 3 cut(s) 31, 366, 762
Hpy188III TCNNGA 1 cut(s) 474
HpyAV CCTTC 3 cut(s) 470, 693, 742
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4V TGCA 4 cut(s) 140, 191, 386, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 581
HpyF3I CTNAG 3 cut(s) 205, 363, 538
Hsp92II CATG 6 cut(s) 346, 595, 611, 635, 662, 742
HspAI GCGC 1 cut(s) 575
Ksp22I TGATCA 2 cut(s) 319, 709
Kzo9I GATC 3 cut(s) 319, 709, 722
LguI GCTCTTC 1 cut(s) 353
Lsp1109I GCAGC 3 cut(s) 17, 97, 370
LweI GCATC 2 cut(s) 97, 415
MaeI CTAG 2 cut(s) 474, 744
MaeIII GTNAC 1 cut(s) 490
MalI GATC 3 cut(s) 321, 711, 724
MboI GATC 3 cut(s) 319, 709, 722
MboII GAAGA 2 cut(s) 301, 340
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 2 cut(s) 216, 619
MluCI AATT 7 cut(s) 102, 283, 299, 352, 648, 705, 714
MlyI GAGTC 1 cut(s) 536
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 671
MspR9I CCNGG 2 cut(s) 396, 613
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 2 cut(s) 396, 613
MwoI GCNNNNNNNGC 2 cut(s) 572, 581
NdeII GATC 3 cut(s) 319, 709, 722
NlaIII CATG 6 cut(s) 346, 595, 611, 635, 662, 742
NlaIV GGNNCC 2 cut(s) 61, 214
NmeAIII GCCGAG 2 cut(s) 299, 610
NspI RCATGY 2 cut(s) 346, 611
PaeI GCATGC 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 353
PctI GAATGC 1 cut(s) 756
PkrI GCNGC 3 cut(s) 7, 112, 385
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 394, 611
PspFI CCCAGC 2 cut(s) 62, 667
PspGI CCWGG 2 cut(s) 394, 611
PspN4I GGNNCC 2 cut(s) 61, 214
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 59, 212, 213
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 480, 630
RsaNI GTAC 2 cut(s) 479, 629
RseI CAYNNNNRTG 1 cut(s) 737
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 6, 111, 384
Sau3AI GATC 3 cut(s) 319, 709, 722
Sau96I GGNCC 3 cut(s) 59, 212, 213
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 2 cut(s) 396, 613
SduI GDGCHC 2 cut(s) 216, 619
SetI ASST 8 cut(s) 52, 150, 253, 329, 391, 673, 685, 753
SfaNI GCATC 2 cut(s) 97, 415
SfcI CTRYAG 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 737
SphI GCATGC 1 cut(s) 611
Sse9I AATT 7 cut(s) 102, 283, 299, 352, 648, 705, 714
SsiI CCGC 1 cut(s) 230
SspMI CTAG 2 cut(s) 474, 744
StyD4I CCNGG 2 cut(s) 394, 611
TaaI ACNGT 1 cut(s) 628
TaqI TCGA 1 cut(s) 412
TasI AATT 7 cut(s) 102, 283, 299, 352, 648, 705, 714
TatI WGTACW 1 cut(s) 628
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 3 cut(s) 5, 110, 383
TspDTI ATGAA 4 cut(s) 59, 156, 452, 567
XapI RAATTY 2 cut(s) 299, 714
XbaI TCTAGA 1 cut(s) 473
XceI RCATGY 2 cut(s) 346, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XspI CTAG 2 cut(s) 474, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.