MD15G1255300.v1.1

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000151
Physical Location & Seq
Reverse (-)
21596124 .. 21598429
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1255300.v1.1.491

Sequence Viewer

Length: 1173 bp
ATGATCTTTTGCCATTTCCCTCCCCATCCCCCAGAAGACAAAAAAATAGATATGGCTGCATCAGAGATGGCCCCAACAGACAAAGGCTTCAAAGAAAAATCGTCTGAAGCCTATGCAATGAAGGCTGGCGACGGCCCTAACAGCTATGCCAACAACTCCACTTTCCAGAAAAGAGCTGTGGATTCTGCCAGAGAAGTCATAAGAGAAGAAATTGCAGAAAAGCTGGACACACACACGTTGTCGTTGTCATCCAGTACCTTTCACATTGCAGATTTGGGTTGCTCAGTTGGGCCAAATACATTTTTTGCAGTTGAAAACATACTTGAAGCTGTGCAAGTAAAGTATCAAACTCAAGGGCCGAGTTCTCGAACCCCCGAATTTCAAGTTTTCTTTAATGATCATTCCGGAAATGATTTTAACATGCTCTTCAAATCGCTGCCTCAGAATAGGAATTACTACGCCGTAGGCGTGCCTGGTTCTTTCTATGGTCGGCTATTTCCTAAAGCTTCAATTAACCTATTTCATTCTTCTTATTCCCTTAGTTGGCTTTCAAGAGTGCCAAAAGAGATACTGGACAAGGAGAGTCCTGCTTGGAATAAAGGAAAAATCCATTACTCAAATTCCACAAGCCCAGGAGAAGTAATAAGGGCTTATGAAGCACAACATGCTGACGACATGGAATGTTTCCTTTCTGCCAGGGCACAAGAGATCGTGTATGGAGGATTGATGATGCTTATTATTATATGCCGCCCCAATGGTACCCCTCATTTTGATACCTTGGCAACTGCGACCTATGAAACTTTAGGATCTTGCCTCGTGGACATGACCAAAGAGGGAAAAGTTAGTGAAGAGAAAATTGATTCATTCAACATACCTATATATTTCATGTCTCCGGAAGAGGTGGAAGTTGCTGTAGACAGAAATGGAAACTTCAACATAGAGAGAATACAAATCTTACCAAATGTATTGACAAGTACTACTCTCTCTAATGCCTCAATATCTACATCTCACCTTAGAGCTGTCATGGAAGCACTCCTCAAGGAGCACTTTGGAGACGAAATCTTAGATGAGCTCTTCAACTTATATCACAAGAAAGTTGCAGAGCAACCCTCCAAGTTTGGGTCGGGGAAGGCTATTATTTCTCTCTTTGTGCTTAAACGCAAGGCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

391

Amino Acids

43.54

Weight (kDa)

5.78

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 81 - 387 7.3e-107 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 915
AccIII TCCGGA 2 cut(s) 404, 892
AciI CCGC 1 cut(s) 748
AclWI GGATC 1 cut(s) 814
AcsI RAATTY 2 cut(s) 377, 619
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 3 cut(s) 256, 760, 976
AfiI CCNNNNNNNGG 2 cut(s) 543, 1119
AflIII ACRYGT 1 cut(s) 234
AjnI CCWGG 3 cut(s) 472, 631, 695
AluBI AGCT 7 cut(s) 144, 176, 223, 329, 506, 1019, 1072
AluI AGCT 7 cut(s) 144, 176, 223, 329, 506, 1019, 1072
Alw21I GWGCWC 2 cut(s) 1047, 1074
Alw26I GTCTC 2 cut(s) 894, 1047
AlwI GGATC 1 cut(s) 814
Aor13HI TCCGGA 2 cut(s) 404, 892
AoxI GGCC 4 cut(s) 69, 133, 290, 356
ApeKI GCWGC 2 cut(s) 56, 436
ApoI RAATTY 2 cut(s) 377, 619
Asp718I GGTACC 1 cut(s) 758
AspS9I GGNCC 4 cut(s) 70, 134, 290, 356
AsuHPI GGTGA 1 cut(s) 1001
BaeGI GKGCMC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 1074
BauI CACGAG 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 1047, 1074
BbvI GCAGC 2 cut(s) 43, 423
BccI CCATC 2 cut(s) 33, 61
BceAI ACGGC 2 cut(s) 148, 446
BciT130I CCWGG 3 cut(s) 474, 633, 697
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 894, 1047
BfmI CTRYAG 1 cut(s) 912
BisI GCNGC 3 cut(s) 57, 437, 748
BlsI GCNGC 3 cut(s) 58, 438, 749
BmcAI AGTACT 1 cut(s) 976
Bme1390I CCNGG 3 cut(s) 474, 633, 697
BmgT120I GGNCC 4 cut(s) 70, 134, 290, 356
BmiI GGNNCC 2 cut(s) 72, 760
BmrFI CCNGG 3 cut(s) 474, 633, 697
BmsI GCATC 2 cut(s) 68, 720
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 1094, 1126
BpuEI CTTGAG 2 cut(s) 336, 1022
BsaJI CCNNGG 3 cut(s) 631, 696, 777
BsaWI WCCGGW 2 cut(s) 404, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 543, 1119
Bse1I ACTGG 2 cut(s) 252, 576
Bse3DI GCAATG 2 cut(s) 123, 264
BseAI TCCGGA 2 cut(s) 404, 892
BseBI CCWGG 3 cut(s) 474, 633, 697
BseDI CCNNGG 3 cut(s) 631, 696, 777
BseGI GGATG 2 cut(s) 25, 248
BseLI CCNNNNNNNGG 2 cut(s) 543, 1119
BseMI GCAATG 2 cut(s) 123, 264
BseMII CTCAG 2 cut(s) 297, 455
BseNI ACTGG 2 cut(s) 252, 576
BseRI GAGGAG 1 cut(s) 1025
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 2 cut(s) 43, 423
BshFI GGCC 4 cut(s) 71, 135, 292, 358
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 2 cut(s) 1047, 1074
BsiSI CCGG 2 cut(s) 405, 893
BslI CCNNNNNNNGG 2 cut(s) 543, 1119
BsmAI GTCTC 2 cut(s) 894, 1047
BsmBI CGTCTC 1 cut(s) 1047
BsnI GGCC 4 cut(s) 71, 135, 292, 358
Bsp1286I GDGCHC 3 cut(s) 703, 1047, 1074
Bsp13I TCCGGA 2 cut(s) 404, 892
Bsp143I GATC 4 cut(s) 3, 397, 708, 806
BspACI CCGC 1 cut(s) 748
BspANI GGCC 4 cut(s) 71, 135, 292, 358
BspCNI CTCAG 2 cut(s) 296, 454
BspEI TCCGGA 2 cut(s) 404, 892
BspLI GGNNCC 2 cut(s) 72, 760
BspPI GGATC 1 cut(s) 814
BspQI GCTCTTC 2 cut(s) 431, 1079
BspT107I GGYRCC 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 123, 264
BsrI ACTGG 2 cut(s) 252, 576
BssECI CCNNGG 3 cut(s) 631, 696, 777
BssMI GATC 4 cut(s) 3, 397, 708, 806
BssSI CACGAG 1 cut(s) 815
BssT1I CCWWGG 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 815
Bst2UI CCWGG 3 cut(s) 474, 633, 697
Bst6I CTCTTC 4 cut(s) 431, 843, 891, 1079
BstAPI GCANNNNNTGC 1 cut(s) 665
BstC8I GCNNGC 2 cut(s) 127, 470
BstDEI CTNAG 5 cut(s) 283, 441, 539, 1013, 1063
BstF5I GGATG 2 cut(s) 25, 248
BstKTI GATC 4 cut(s) 6, 400, 711, 809
BstMAI GTCTC 2 cut(s) 894, 1047
BstMBI GATC 4 cut(s) 3, 397, 708, 806
BstMWI GCNNNNNNNGC 4 cut(s) 122, 141, 656, 665
BstNI CCWGG 3 cut(s) 474, 633, 697
BstNSI RCATGY 2 cut(s) 424, 668
BstSCI CCNGG 3 cut(s) 472, 631, 695
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 43, 423
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BsuRI GGCC 4 cut(s) 71, 135, 292, 358
BtsCI GGATG 2 cut(s) 25, 248
Cac8I GCNNGC 2 cut(s) 127, 470
Cfr13I GGNCC 4 cut(s) 70, 134, 290, 356
Csp6I GTAC 3 cut(s) 255, 759, 975
CviAII CATG 6 cut(s) 421, 665, 676, 823, 886, 1024
CviQI GTAC 3 cut(s) 255, 759, 975
DdeI CTNAG 5 cut(s) 283, 441, 539, 1013, 1063
DpnI GATC 4 cut(s) 5, 399, 710, 808
DpnII GATC 4 cut(s) 3, 397, 708, 806
Eam1104I CTCTTC 4 cut(s) 431, 843, 891, 1079
EarI CTCTTC 4 cut(s) 431, 843, 891, 1079
Ecl136II GAGCTC 1 cut(s) 1072
Eco130I CCWWGG 1 cut(s) 777
Eco24I GRGCYC 1 cut(s) 1074
Eco53kI GAGCTC 1 cut(s) 1072
Eco57I CTGAAG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 1072
EcoRII CCWGG 3 cut(s) 472, 631, 695
EcoT14I CCWWGG 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 1074
ErhI CCWWGG 1 cut(s) 777
Esp3I CGTCTC 1 cut(s) 1047
FaeI CATG 6 cut(s) 424, 668, 679, 826, 889, 1027
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FatI CATG 6 cut(s) 420, 664, 675, 822, 885, 1023
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 3 cut(s) 57, 437, 748
FokI GGATG 2 cut(s) 12, 235
FriOI GRGCYC 1 cut(s) 1074
Fsp4HI GCNGC 3 cut(s) 57, 437, 748
GluI GCNGC 3 cut(s) 57, 437, 748
HaeIII GGCC 4 cut(s) 71, 135, 292, 358
HapII CCGG 2 cut(s) 405, 893
Hin1II CATG 6 cut(s) 424, 668, 679, 826, 889, 1027
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 3 cut(s) 182, 583, 860
HpaII CCGG 2 cut(s) 405, 893
HphI GGTGA 1 cut(s) 1001
Hpy166II GTNNAC 2 cut(s) 820, 916
Hpy188I TCNGA 3 cut(s) 64, 106, 444
Hpy188III TCNNGA 5 cut(s) 166, 366, 405, 552, 893
Hpy8I GTNNAC 2 cut(s) 820, 916
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 115, 1123
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 7 cut(s) 59, 116, 215, 269, 308, 334, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 141, 656, 665
HpyF3I CTNAG 5 cut(s) 283, 441, 539, 1013, 1063
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 6 cut(s) 424, 668, 679, 826, 889, 1027
Kpn2I TCCGGA 2 cut(s) 404, 892
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 3, 397, 708, 806
LguI GCTCTTC 2 cut(s) 431, 1079
LmnI GCTCC 1 cut(s) 1042
Lsp1109I GCAGC 2 cut(s) 43, 423
LweI GCATC 2 cut(s) 68, 720
MaeII ACGT 1 cut(s) 236
MalI GATC 4 cut(s) 5, 399, 710, 808
MboI GATC 4 cut(s) 3, 397, 708, 806
MboII GAAGA 7 cut(s) 47, 218, 418, 519, 860, 908, 1066
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 3 cut(s) 703, 1047, 1074
MluCI AATT 7 cut(s) 210, 377, 451, 510, 619, 855, 1168
MlyI GAGTC 1 cut(s) 592
MroI TCCGGA 2 cut(s) 404, 892
MseI TTAA 4 cut(s) 393, 417, 513, 1155
MspI CCGG 2 cut(s) 405, 893
MspR9I CCNGG 3 cut(s) 474, 633, 697
MvaI CCWGG 3 cut(s) 474, 633, 697
MwoI GCNNNNNNNGC 4 cut(s) 122, 141, 656, 665
NdeII GATC 4 cut(s) 3, 397, 708, 806
NlaIII CATG 6 cut(s) 424, 668, 679, 826, 889, 1027
NlaIV GGNNCC 2 cut(s) 72, 760
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 2 cut(s) 424, 668
PciSI GCTCTTC 2 cut(s) 431, 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PfeI GAWTC 2 cut(s) 182, 860
PkrI GCNGC 3 cut(s) 58, 438, 749
PleI GAGTC 1 cut(s) 591
PpsI GAGTC 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 1074
Psp6I CCWGG 3 cut(s) 472, 631, 695
PspGI CCWGG 3 cut(s) 472, 631, 695
PspN4I GGNNCC 2 cut(s) 72, 760
PspPI GGNCC 4 cut(s) 70, 134, 290, 356
PsuI RGATCY 1 cut(s) 806
RsaI GTAC 3 cut(s) 256, 760, 976
RsaNI GTAC 3 cut(s) 255, 759, 975
SacI GAGCTC 1 cut(s) 1074
SapI GCTCTTC 2 cut(s) 431, 1079
SaqAI TTAA 4 cut(s) 393, 417, 513, 1155
SatI GCNGC 3 cut(s) 57, 437, 748
Sau3AI GATC 4 cut(s) 3, 397, 708, 806
Sau96I GGNCC 4 cut(s) 70, 134, 290, 356
ScaI AGTACT 1 cut(s) 976
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 3 cut(s) 474, 633, 697
SduI GDGCHC 3 cut(s) 703, 1047, 1074
SfaNI GCATC 2 cut(s) 68, 720
SfcI CTRYAG 1 cut(s) 912
SmlI CTYRAG 2 cut(s) 351, 1037
SmoI CTYRAG 2 cut(s) 351, 1037
Sse9I AATT 7 cut(s) 210, 377, 451, 510, 619, 855, 1168
SsiI CCGC 1 cut(s) 748
SstI GAGCTC 1 cut(s) 1074
StyD4I CCNGG 3 cut(s) 472, 631, 695
StyI CCWWGG 1 cut(s) 777
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 367
TasI AATT 7 cut(s) 210, 377, 451, 510, 619, 855, 1168
TatI WGTACW 1 cut(s) 974
TauI GCSGC 1 cut(s) 750
TfiI GAWTC 2 cut(s) 182, 860
Tru1I TTAA 4 cut(s) 393, 417, 513, 1155
Tru9I TTAA 4 cut(s) 393, 417, 513, 1155
TseI GCWGC 2 cut(s) 56, 436
TspDTI ATGAA 6 cut(s) 134, 512, 669, 810, 852, 874
XapI RAATTY 2 cut(s) 377, 619
XceI RCATGY 2 cut(s) 424, 668
XmiI GTMKAC 1 cut(s) 915
ZrmI AGTACT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.