Prupe.5G228700_v2.0.a1

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000151
Physical Location & Seq
Reverse (-)
17532440 .. 17534115
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G228700.1

Sequence Viewer

Length: 1110 bp
ATGGCTCCAGCAGAGGAAACCAGTAAATTCTGTGAAGCATATCCAATGAAAGGTGGAGATGGACCCAACAGCTATGCCAACAACTCCACTTACCAGAGAGGAGTTGTGGATGCTGCCAAAGAACTTCTGAGTAAGGCAATTGCAGAAAAGCTTGATATAGACATCTTGTTATCTTCCAACAGCTTTCAAATTGCAGATTTGGGTTGCTCTGTAGGGCCAAATACATTTTTCGCGGTTGAAAACATAGTTGAAGCTGCGAAATTCAAGTTTCAAAGCCAAGGGCAGGATTCTCAAGTTCCTGAATTTCAAGTCTTCTTTAATGATCATACCCCAAATGATTTTAACATGCTCTTCAAATCCCTCCCTCAGAATAGGCGATACTACGCAGTCGGTGTGCCTGGTTCTTTCTATGGTCGCATATTTCCTAATGCTTCCATTCACTTTGTTCACTCGTCTTATGCAATTCAATGGCTTTCAAGCGTACCAAAAGTAGTAGTGGACAAAACCTCACCTGCTTGGAATAAAGGACGAATCCATTACCTAAATTCCCCAGAAGAAGTAGCAAGGGCTTATGAAGCTCAATATACAGAGGACATGGAGTGCTTCCTGCATGCCAGGGCTCAAGAGATTGTGTATGGAGGATTGATGGTACTTACCGTTCCGGGCCGCCCCAATGGTAGTTCTCATTCTCATTCTTCGATAAATATGAGCTTTCAACTTTTAGGATCTGCCCTCATGGACTTGGCTAGGAAGGGTGGTGTTAGCGAAGAGAAAGTAGATTCATTTAACATACCAATATATTGCATGTCCCCCCAAGAACTGGAAGCTGCTGTAGAACGAAATGGAAGTTTTAGCATAGAGAGTATGGAAAACTTACCTCATGTCTCGGTAGATGACACTGTCTCAAAATCTCAACTATTAGCAGCTCACATGAGAGCTGGCATGGAGGGGCTCGTCAAGCAGAAATTTGGAGAAGAAATCTTAGATGAGCTCTTTGACTTGTTTCGTAAGAAACTTGAAGAGGCACCATTCTTCATTGAGACAGGGAAGACAATTAGCTTTCTCTGTGTGCTTAGGCGCAAGGGAAATGGACTTGAACATGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

370

Amino Acids

40.97

Weight (kDa)

5.45

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 820
AccII CGCG 1 cut(s) 233
AciI CCGC 2 cut(s) 233, 667
AclWI GGATC 1 cut(s) 733
AcsI RAATTY 5 cut(s) 26, 260, 302, 544, 965
AfaI GTAC 2 cut(s) 483, 651
AfiI CCNNNNNNNGG 3 cut(s) 50, 283, 820
AjnI CCWGG 2 cut(s) 397, 614
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 3 cut(s) 889, 907, 1034
AlwI GGATC 1 cut(s) 733
AoxI GGCC 2 cut(s) 215, 664
ApeKI GCWGC 4 cut(s) 113, 254, 827, 923
ApoI RAATTY 5 cut(s) 26, 260, 302, 544, 965
AspLEI GCGC 1 cut(s) 1080
AspS9I GGNCC 3 cut(s) 62, 215, 664
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 1 cut(s) 501
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 1024
BanII GRGCYC 3 cut(s) 622, 954, 993
BbsI GAAGAC 2 cut(s) 304, 1055
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 4 cut(s) 100, 241, 814, 935
BccI CCATC 2 cut(s) 53, 640
BciT130I CCWGG 2 cut(s) 399, 616
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 3 cut(s) 889, 907, 1034
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 2 cut(s) 210, 831
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 5 cut(s) 114, 255, 667, 828, 924
BlsI GCNGC 5 cut(s) 115, 256, 668, 829, 925
Bme1390I CCNGG 3 cut(s) 399, 616, 663
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 62, 215, 664
BmiI GGNNCC 3 cut(s) 6, 64, 1026
BmrFI CCNGG 3 cut(s) 399, 616, 663
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 2 cut(s) 304, 1055
Bpu10I CCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 2 cut(s) 276, 606
BpuMI CCSGG 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 277, 615
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 283, 820
Bse1I ACTGG 2 cut(s) 21, 825
BseBI CCWGG 2 cut(s) 399, 616
BseDI CCNNGG 2 cut(s) 277, 615
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 3 cut(s) 50, 283, 820
BseMII CTCAG 2 cut(s) 119, 380
BseNI ACTGG 2 cut(s) 21, 825
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 4 cut(s) 100, 241, 814, 935
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 2 cut(s) 217, 666
BshNI GGYRCC 1 cut(s) 1024
BsiHKAI GWGCWC 1 cut(s) 993
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 3 cut(s) 50, 283, 820
BsmAI GTCTC 3 cut(s) 889, 907, 1034
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 2 cut(s) 217, 666
Bsp1286I GDGCHC 3 cut(s) 622, 954, 993
Bsp143I GATC 2 cut(s) 322, 725
BspACI CCGC 2 cut(s) 233, 667
BspANI GGCC 2 cut(s) 217, 666
BspCNI CTCAG 2 cut(s) 120, 379
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 6, 64, 1026
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 733
BspQI GCTCTTC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 1024
BsrI ACTGG 2 cut(s) 21, 825
BssECI CCNNGG 2 cut(s) 277, 615
BssMI GATC 2 cut(s) 322, 725
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 399, 616
Bst4CI ACNGT 2 cut(s) 658, 901
Bst6I CTCTTC 3 cut(s) 356, 762, 1014
BstC8I GCNNGC 2 cut(s) 612, 940
BstDEI CTNAG 4 cut(s) 128, 366, 982, 1073
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 1080
BstKTI GATC 2 cut(s) 325, 728
BstMAI GTCTC 3 cut(s) 889, 907, 1034
BstMBI GATC 2 cut(s) 322, 725
BstMWI GCNNNNNNNGC 2 cut(s) 575, 958
BstNI CCWGG 2 cut(s) 399, 616
BstNSI RCATGY 4 cut(s) 349, 614, 808, 1103
BstSCI CCNGG 3 cut(s) 397, 614, 661
BstSFI CTRYAG 2 cut(s) 210, 831
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 4 cut(s) 100, 241, 814, 935
BstV2I GAAGAC 2 cut(s) 304, 1055
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
BsuRI GGCC 2 cut(s) 217, 666
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 897
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 612, 940
CfoI GCGC 1 cut(s) 1080
Cfr13I GGNCC 3 cut(s) 62, 215, 664
Csp6I GTAC 2 cut(s) 482, 650
CviAII CATG 9 cut(s) 346, 595, 611, 736, 805, 881, 931, 943, 1100
CviQI GTAC 2 cut(s) 482, 650
DdeI CTNAG 4 cut(s) 128, 366, 982, 1073
DpnI GATC 2 cut(s) 324, 727
DpnII GATC 2 cut(s) 322, 725
Eam1104I CTCTTC 3 cut(s) 356, 762, 1014
EarI CTCTTC 3 cut(s) 356, 762, 1014
Ecl136II GAGCTC 1 cut(s) 991
Eco130I CCWWGG 1 cut(s) 277
Eco24I GRGCYC 3 cut(s) 622, 954, 993
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 991
EcoICRI GAGCTC 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 397, 614
EcoT14I CCWWGG 1 cut(s) 277
EcoT38I GRGCYC 3 cut(s) 622, 954, 993
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 9 cut(s) 349, 598, 614, 739, 808, 884, 934, 946, 1103
FaqI GGGAC 1 cut(s) 793
FatI CATG 9 cut(s) 345, 594, 610, 735, 804, 880, 930, 942, 1099
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 5 cut(s) 114, 255, 667, 828, 924
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 3 cut(s) 622, 954, 993
Fsp4HI GCNGC 5 cut(s) 114, 255, 667, 828, 924
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 1079
GluI GCNGC 5 cut(s) 114, 255, 667, 828, 924
HaeIII GGCC 2 cut(s) 217, 666
HapII CCGG 1 cut(s) 662
HhaI GCGC 1 cut(s) 1080
Hin1II CATG 9 cut(s) 349, 598, 614, 739, 808, 884, 934, 946, 1103
Hin6I GCGC 1 cut(s) 1078
HinP1I GCGC 1 cut(s) 1078
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 287, 531, 779
HpaII CCGG 1 cut(s) 662
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 2 cut(s) 448, 499
Hpy188I TCNGA 2 cut(s) 129, 369
Hpy188III TCNNGA 2 cut(s) 299, 623
Hpy8I GTNNAC 2 cut(s) 448, 499
HpyAV CCTTC 1 cut(s) 745
HpyCH4III ACNGT 2 cut(s) 658, 901
HpyCH4V TGCA 5 cut(s) 143, 194, 461, 610, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 958
HpyF3I CTNAG 4 cut(s) 128, 366, 982, 1073
Hsp92II CATG 9 cut(s) 349, 598, 614, 739, 808, 884, 934, 946, 1103
HspAI GCGC 1 cut(s) 1078
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 322, 725
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 4 cut(s) 100, 241, 814, 935
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 747
MalI GATC 2 cut(s) 324, 727
MboI GATC 2 cut(s) 322, 725
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 3 cut(s) 622, 954, 993
MluCI AATT 9 cut(s) 26, 138, 189, 260, 302, 462, 544, 965, 1053
MmeI TCCRAC 1 cut(s) 201
MseI TTAA 3 cut(s) 318, 342, 786
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 3 cut(s) 399, 616, 663
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 2 cut(s) 399, 616
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 575, 958
NciI CCSGG 1 cut(s) 663
NdeII GATC 2 cut(s) 322, 725
NlaIII CATG 9 cut(s) 349, 598, 614, 739, 808, 884, 934, 946, 1103
NlaIV GGNNCC 3 cut(s) 6, 64, 1026
NspI RCATGY 4 cut(s) 349, 614, 808, 1103
PaeI GCATGC 1 cut(s) 614
PaqCI CACCTGC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 287, 531, 779
PflFI GACNNNGTC 1 cut(s) 899
PflMI CCANNNNNTGG 1 cut(s) 820
PkrI GCNGC 5 cut(s) 115, 256, 668, 829, 925
Psp124BI GAGCTC 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 397, 614
PspGI CCWGG 2 cut(s) 397, 614
PspN4I GGNNCC 3 cut(s) 6, 64, 1026
PspPI GGNCC 3 cut(s) 62, 215, 664
PsrI GAACNNNNNNTAC 2 cut(s) 642, 674
PsuI RGATCY 1 cut(s) 725
PsyI GACNNNGTC 1 cut(s) 899
RsaI GTAC 2 cut(s) 483, 651
RsaNI GTAC 2 cut(s) 482, 650
SacI GAGCTC 1 cut(s) 993
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 318, 342, 786
SatI GCNGC 5 cut(s) 114, 255, 667, 828, 924
Sau3AI GATC 2 cut(s) 322, 725
Sau96I GGNCC 3 cut(s) 62, 215, 664
ScrFI CCNGG 3 cut(s) 399, 616, 663
SduI GDGCHC 3 cut(s) 622, 954, 993
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 210, 831
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 291, 621
SmoI CTYRAG 2 cut(s) 291, 621
SphI GCATGC 1 cut(s) 614
Sse9I AATT 9 cut(s) 26, 138, 189, 260, 302, 462, 544, 965, 1053
SsiI CCGC 2 cut(s) 233, 667
SspMI CTAG 1 cut(s) 747
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 3 cut(s) 397, 614, 661
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 658, 901
TaqI TCGA 1 cut(s) 698
TasI AATT 9 cut(s) 26, 138, 189, 260, 302, 462, 544, 965, 1053
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 3 cut(s) 287, 531, 779
Tru1I TTAA 3 cut(s) 318, 342, 786
Tru9I TTAA 3 cut(s) 318, 342, 786
TscAI CASTG 1 cut(s) 904
TseI GCWGC 4 cut(s) 113, 254, 827, 923
TspDTI ATGAA 4 cut(s) 62, 588, 771, 1024
TspRI CASTG 1 cut(s) 904
Tth111I GACNNNGTC 1 cut(s) 899
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 5 cut(s) 26, 260, 302, 544, 965
XceI RCATGY 4 cut(s) 349, 614, 808, 1103
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.