Rh2BG393000

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000151
Physical Location & Seq
Reverse (-)
55748826 .. 55753397
4572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG393000.1

Sequence Viewer

Length: 801 bp
ATGGCAGCAGAGAAAATCAATAAATTGAGTGAAGAAGGTGAAGCATATCCAATGATAGGTGGAGATGGATCCAAAAGCTATGCCAACAACTCCACTTACCAGAGAGGAGCTGTGGATGTTGTCAAACAAATTATAAAAATGGCAGTTGCAGAAAACCTTGACATAGAGAAGATCATGTTATCGAATACCAACAACACGTTTAACATTGTAGATCTGGGTTGCTCAGTTGGGCCAAATACATTTTCTTCAGTTGAAAACATAATTGAAGCCGTGCAGTCCAAGTATCAAAGCCAAGTGCCGCGGCTGAGTGCATCACAAATCCCGGACTTTCAAGTTTTCTTCAACGATCACACCTGTAATGACTTCAACATGCTCTTCAGGTCCCTCCCCGATCAGAACAGGCAGCGATACTATGCCGCCGGGGTGCCTGGTTCTTTTTATGGTCGCTTATTTCCTAGAGCTTCCATTCACTTTGTTTACTCTTCTTACGCCCTTCAATGGATTTCGAGAGTGCCAAAAGAGGTAACGGACAAAGATAGCCCTGCCTGGAATAAAGGTCGGATCCATTATCTAAATTCCACGGATGAAGTAGTAAGGGCATATCAAGCGCAGCATGCTGATGACATGGAGTGCTTTTTGGATGCCAGGGCACAAGAGATTGTGTGTGGAGGTTTGATGGTACTCATCATTCCTGGTCATCAGCTTCAAGGTTCATCAAATGATTCTCATTCTTTTCTTAATGTTACATATCGGCTTTTAGGATCTTCCCTCACGGACATGGCTAGGAAGGTAAGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

5.69

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 55 - 263 2.2e-75 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 424
AccII CGCG 1 cut(s) 301
AciI CCGC 3 cut(s) 299, 301, 417
AclWI GGATC 5 cut(s) 63, 76, 556, 569, 769
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 2 cut(s) 231, 361
AfaI GTAC 1 cut(s) 681
AfiI CCNNNNNNNGG 2 cut(s) 56, 498
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 7 cut(s) 254, 266, 332, 343, 367, 497, 707
AjnI CCWGG 4 cut(s) 427, 545, 644, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AluBI AGCT 4 cut(s) 78, 110, 461, 703
AluI AGCT 4 cut(s) 78, 110, 461, 703
AlwI GGATC 5 cut(s) 63, 76, 556, 569, 769
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 3 cut(s) 5, 403, 610
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 2 cut(s) 230, 381
AsuC2I CCSGG 2 cut(s) 323, 421
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 652
BamHI GGATCC 2 cut(s) 68, 561
BanI GGYRCC 1 cut(s) 424
BbvI GCAGC 3 cut(s) 17, 415, 622
BccI CCATC 2 cut(s) 59, 670
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 4 cut(s) 429, 547, 646, 693
BcnI CCSGG 2 cut(s) 323, 421
BfaI CTAG 2 cut(s) 456, 783
BglII AGATCT 1 cut(s) 211
BisI GCNGC 6 cut(s) 6, 299, 302, 404, 417, 611
BlsI GCNGC 6 cut(s) 7, 300, 303, 405, 418, 612
Bme1390I CCNGG 6 cut(s) 323, 421, 429, 547, 646, 693
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 230, 381
BmiI GGNNCC 4 cut(s) 70, 383, 426, 563
BmrFI CCNGG 6 cut(s) 323, 421, 429, 547, 646, 693
BmsI GCATC 2 cut(s) 320, 631
BpuMI CCSGG 2 cut(s) 323, 421
BsaJI CCNNGG 4 cut(s) 299, 420, 579, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 498
BseBI CCWGG 4 cut(s) 429, 547, 646, 693
BseDI CCNNGG 4 cut(s) 299, 420, 579, 645
BseGI GGATG 3 cut(s) 121, 589, 646
BseLI CCNNNNNNNGG 2 cut(s) 56, 498
BseMII CTCAG 2 cut(s) 237, 296
BseRI GAGGAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 3 cut(s) 17, 415, 622
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 424
BsiSI CCGG 2 cut(s) 323, 420
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 56, 498
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
BspACI CCGC 3 cut(s) 299, 301, 417
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 236, 297
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 4 cut(s) 70, 383, 426, 563
BspPI GGATC 5 cut(s) 63, 76, 556, 569, 769
BspQI GCTCTTC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 299, 420, 579, 645
BssMI GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
Bst2UI CCWGG 4 cut(s) 429, 547, 646, 693
Bst6I CTCTTC 2 cut(s) 380, 487
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 2 cut(s) 223, 305
BstDSI CCRYGG 2 cut(s) 299, 579
BstF5I GGATG 3 cut(s) 121, 589, 646
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 7 cut(s) 71, 174, 214, 349, 394, 564, 764
BstMBI GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
BstMWI GCNNNNNNNGC 2 cut(s) 605, 614
BstNI CCWGG 4 cut(s) 429, 547, 646, 693
BstNSI RCATGY 2 cut(s) 373, 617
BstSCI CCNGG 6 cut(s) 321, 419, 427, 545, 644, 691
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 17, 415, 622
BstX2I RGATCY 4 cut(s) 68, 211, 561, 761
BstYI RGATCY 4 cut(s) 68, 211, 561, 761
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 2 cut(s) 299, 579
BtsCI GGATG 3 cut(s) 121, 589, 646
Cac8I GCNNGC 1 cut(s) 615
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 230, 381
Cfr42I CCGCGG 1 cut(s) 302
Csp6I GTAC 1 cut(s) 680
CviAII CATG 5 cut(s) 175, 370, 614, 625, 778
CviQI GTAC 1 cut(s) 680
DdeI CTNAG 2 cut(s) 223, 305
DpnI GATC 7 cut(s) 70, 173, 213, 348, 393, 563, 763
DpnII GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
Eam1104I CTCTTC 2 cut(s) 380, 487
EarI CTCTTC 2 cut(s) 380, 487
Eco47I GGWCC 1 cut(s) 381
Eco57I CTGAAG 2 cut(s) 231, 361
EcoO109I RGGNCCY 1 cut(s) 381
EcoRII CCWGG 4 cut(s) 427, 545, 644, 691
FaeI CATG 5 cut(s) 178, 373, 617, 628, 781
FaqI GGGAC 1 cut(s) 367
FatI CATG 5 cut(s) 174, 369, 613, 624, 777
Fnu4HI GCNGC 6 cut(s) 6, 299, 302, 404, 417, 611
FokI GGATG 3 cut(s) 128, 596, 653
Fsp4HI GCNGC 6 cut(s) 6, 299, 302, 404, 417, 611
FspBI CTAG 2 cut(s) 456, 783
GlaI GCGC 1 cut(s) 609
GluI GCNGC 6 cut(s) 6, 299, 302, 404, 417, 611
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 323, 420
HhaI GCGC 1 cut(s) 610
Hin1II CATG 5 cut(s) 178, 373, 617, 628, 781
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HinfI GANTC 1 cut(s) 722
HpaII CCGG 2 cut(s) 323, 420
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 396, 561
Hpy188III TCNNGA 1 cut(s) 507
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 29, 503, 781
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 149, 274, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 605, 614
HpyF3I CTNAG 2 cut(s) 223, 305
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 5 cut(s) 178, 373, 617, 628, 781
HspAI GCGC 1 cut(s) 608
KspI CCGCGG 1 cut(s) 302
Kzo9I GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 3 cut(s) 17, 415, 622
LweI GCATC 2 cut(s) 320, 631
MaeI CTAG 2 cut(s) 456, 783
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 523, 742
MalI GATC 7 cut(s) 70, 173, 213, 348, 393, 563, 763
MboI GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
MboII GAAGA 7 cut(s) 44, 181, 237, 331, 367, 474, 756
MflI RGATCY 4 cut(s) 68, 211, 561, 761
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 4 cut(s) 23, 129, 261, 574
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 5 cut(s) 98, 395, 514, 662, 779
MseI TTAA 3 cut(s) 201, 738, 799
MslI CAYNNNNRTG 2 cut(s) 618, 776
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 2 cut(s) 323, 420
MspR9I CCNGG 6 cut(s) 323, 421, 429, 547, 646, 693
MvaI CCWGG 4 cut(s) 429, 547, 646, 693
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 605, 614
NciI CCSGG 2 cut(s) 323, 421
NdeII GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
NlaIII CATG 5 cut(s) 178, 373, 617, 628, 781
NlaIV GGNNCC 4 cut(s) 70, 383, 426, 563
NspI RCATGY 2 cut(s) 373, 617
PaeI GCATGC 1 cut(s) 617
PciSI GCTCTTC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 6 cut(s) 7, 300, 303, 405, 418, 612
PpuMI RGGWCCY 1 cut(s) 381
PsiI TTATAA 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 4 cut(s) 427, 545, 644, 691
PspGI CCWGG 4 cut(s) 427, 545, 644, 691
PspN4I GGNNCC 4 cut(s) 70, 383, 426, 563
PspPI GGNCC 2 cut(s) 230, 381
PspPPI RGGWCCY 1 cut(s) 381
PsuI RGATCY 4 cut(s) 68, 211, 561, 761
RsaI GTAC 1 cut(s) 681
RsaNI GTAC 1 cut(s) 680
RseI CAYNNNNRTG 2 cut(s) 618, 776
SacII CCGCGG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 3 cut(s) 201, 738, 799
SatI GCNGC 6 cut(s) 6, 299, 302, 404, 417, 611
Sau3AI GATC 7 cut(s) 68, 171, 211, 346, 391, 561, 761
Sau96I GGNCC 2 cut(s) 230, 381
ScrFI CCNGG 6 cut(s) 323, 421, 429, 547, 646, 693
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 2 cut(s) 320, 631
Sfr303I CCGCGG 1 cut(s) 302
SgrBI CCGCGG 1 cut(s) 302
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 618, 776
SphI GCATGC 1 cut(s) 617
Sse9I AATT 4 cut(s) 23, 129, 261, 574
SsiI CCGC 3 cut(s) 299, 301, 417
SspMI CTAG 2 cut(s) 456, 783
StyD4I CCNGG 6 cut(s) 321, 419, 427, 545, 644, 691
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 182, 506
TasI AATT 4 cut(s) 23, 129, 261, 574
TauI GCSGC 3 cut(s) 301, 304, 419
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 3 cut(s) 201, 738, 799
Tru9I TTAA 3 cut(s) 201, 738, 799
TseI GCWGC 3 cut(s) 5, 403, 610
TspDTI ATGAA 2 cut(s) 600, 702
TspGWI ACGGA 3 cut(s) 542, 596, 788
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 574
XceI RCATGY 2 cut(s) 373, 617
XspI CTAG 2 cut(s) 456, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.