pycom02g26220

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000151
Physical Location & Seq
Forward (+)
24058197 .. 24059603
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26220.1

Sequence Viewer

Length: 798 bp
ATGCTCTTCAAATCCCTCCCTCAGAACAGGCAATACTACGCCGCAGGTGTGCCTGGTTCGTTCTATGGTAAGATATTTCCTAATGCTTCCATTCACTTTTTTCACTGTTCTTCTTCAAATCACTGGCTTTCTAGAGTACCAAAAGAGATAGTGAACAAAGAGAGTCCAGCTTGGAATAAAGGAAAAATCTATTACTCAAGTTCCACAACTGAAGTGACAAGGGCTTATGAAACTCAACATGCTTTGGACATGGAGTGTTTTCTTAATGCAAGGGCACAAGAGATTGTGTATGGAGGATTGATGGTGCTTATCATTTCATGTCGCCCCAATGGTACCCCTCATTCTCATACTCTGGCAAGTGTAATCTATGAAACTTTAGGATCTTACCTCATAGACATGGCCAGAAAGAAGAGCATATATATATTCTCTGTGGCTTCAATGTGTTTTTTGTACATGCAGGGATTGGTTAGTGAAGAGAAAATAGATTCATTTAACATACCTGTGTATGTCATGTCTCCCCAAGAACTGGAAGTTGACGTAGAAAGAACTGGATACTTTAGCATTGAGAGAATGGAAATTTTACCAAATATGTTTCCAAATAGCAATCTCTCTAATGCCTTATTATGTACATCTCACGTTAGAGCAGTTCATGAAGAACACATCAAGCAGCACTTTGGAGAAGAAATCATAGATGAAGTCTTCAACTTATACCATAAGAAAGTTGAAGAGCAACCCTCCAAGTTTGAGTTGGGGAAGACTGTTGTTTCTATTGCCGTGCTTAAACGCAAAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

266

Amino Acids

30.27

Weight (kDa)

6.83

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 8 - 262 2.8e-68 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 35
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 526
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 4 cut(s) 138, 334, 452, 628
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 5 cut(s) 10, 117, 438, 703, 725
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 1 cut(s) 388
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 1 cut(s) 667
ApoI RAATTY 1 cut(s) 576
Asp718I GGTACC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 2 cut(s) 691, 761
BbvI GCAGC 1 cut(s) 679
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 758
BciT130I CCWGG 1 cut(s) 54
BciVI GTATCC 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 545
BisI GCNGC 2 cut(s) 42, 668
BlsI GCNGC 2 cut(s) 43, 669
Bme1390I CCNGG 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 54
BpiI GAAGAC 2 cut(s) 691, 761
BplI GAGNNNNNCTC 2 cut(s) 719, 751
BpuEI CTTGAG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 3 cut(s) 128, 531, 553
BseBI CCWGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 3 cut(s) 128, 531, 553
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 679
BshFI GGCC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 277
Bsp1407I TGTACA 2 cut(s) 450, 626
Bsp143I GATC 1 cut(s) 380
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 388
BspQI GCTCTTC 3 cut(s) 11, 404, 720
BspT107I GGYRCC 1 cut(s) 332
BsrGI TGTACA 2 cut(s) 450, 626
BsrI ACTGG 3 cut(s) 128, 531, 553
BssMI GATC 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 107, 760
Bst6I CTCTTC 4 cut(s) 11, 404, 468, 720
BstAUI TGTACA 2 cut(s) 450, 626
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 242, 457
BstSCI CCNGG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 2 cut(s) 691, 761
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 103, 121
BveI ACCTGC 1 cut(s) 35
CciI TCATGA 1 cut(s) 649
Csp6I GTAC 4 cut(s) 137, 333, 451, 627
CviAII CATG 7 cut(s) 239, 250, 318, 397, 454, 511, 650
CviJI RGCY 5 cut(s) 127, 170, 224, 401, 434
CviKI_1 RGCY 5 cut(s) 127, 170, 224, 401, 434
CviQI GTAC 4 cut(s) 137, 333, 451, 627
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 4 cut(s) 11, 404, 468, 720
EarI CTCTTC 4 cut(s) 11, 404, 468, 720
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 52
FaeI CATG 7 cut(s) 242, 253, 321, 400, 457, 514, 653
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 7 cut(s) 238, 249, 317, 396, 453, 510, 649
Fnu4HI GCNGC 2 cut(s) 42, 668
Fsp4HI GCNGC 2 cut(s) 42, 668
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 42, 668
HaeIII GGCC 1 cut(s) 401
Hin1II CATG 7 cut(s) 242, 253, 321, 400, 457, 514, 653
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 2 cut(s) 163, 485
Hpy166II GTNNAC 2 cut(s) 154, 535
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 132, 650
Hpy8I GTNNAC 2 cut(s) 154, 535
HpyCH4III ACNGT 2 cut(s) 107, 760
HpyCH4IV ACGT 2 cut(s) 537, 636
HpyCH4V TGCA 2 cut(s) 269, 457
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 2 cut(s) 537, 636
Hsp92II CATG 7 cut(s) 242, 253, 321, 400, 457, 514, 653
KpnI GGTACC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 380
LguI GCTCTTC 3 cut(s) 11, 404, 720
Lsp1109I GCAGC 1 cut(s) 679
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 537, 636
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 9 cut(s) 102, 105, 421, 485, 665, 691, 692, 737, 766
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 576, 793
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 6 cut(s) 26, 30, 287, 348, 398, 745
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 4 cut(s) 264, 492, 780, 796
MslI CAYNNNNRTG 2 cut(s) 395, 500
Msp20I TGGCCA 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeII GATC 1 cut(s) 380
NlaIII CATG 7 cut(s) 242, 253, 321, 400, 457, 514, 653
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 242, 457
PagI TCATGA 1 cut(s) 649
PaqCI CACCTGC 1 cut(s) 35
PciSI GCTCTTC 3 cut(s) 11, 404, 720
PfeI GAWTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 2 cut(s) 43, 669
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 334
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 4 cut(s) 138, 334, 452, 628
RsaNI GTAC 4 cut(s) 137, 333, 451, 627
RseI CAYNNNNRTG 2 cut(s) 395, 500
SapI GCTCTTC 3 cut(s) 11, 404, 720
SaqAI TTAA 4 cut(s) 264, 492, 780, 796
SatI GCNGC 2 cut(s) 42, 668
Sau3AI GATC 1 cut(s) 380
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 277
SetI ASST 6 cut(s) 49, 172, 390, 502, 540, 639
SmiMI CAYNNNNRTG 2 cut(s) 395, 500
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 2 cut(s) 576, 793
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 107, 760
TaiI ACGT 2 cut(s) 540, 639
TasI AATT 2 cut(s) 576, 793
TatI WGTACW 2 cut(s) 450, 626
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 4 cut(s) 264, 492, 780, 796
Tru9I TTAA 4 cut(s) 264, 492, 780, 796
TscAI CASTG 2 cut(s) 110, 128
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 7 cut(s) 243, 306, 384, 477, 638, 666, 708
TspRI CASTG 2 cut(s) 110, 128
Van91I CCANNNNNTGG 1 cut(s) 526
XapI RAATTY 1 cut(s) 576
XbaI TCTAGA 1 cut(s) 131
XceI RCATGY 2 cut(s) 242, 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.