Prupe.5G229000_v2.0.a1

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000151
Physical Location & Seq
Reverse (-)
17539727 .. 17542058
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G229000.1

Sequence Viewer

Length: 879 bp
ATGGCTCCAGCAGAGGAAAGCAGTAAATTTGAAGCATATCCAATGAAAAGTGGAGATGGCCCCAACAGCTATGCCAACAACTCCACTTACCAGAGAGGAATCGTTGACATTGCCAAAGAACTTCTACACAAGGAAATTGCAGAAAAGCTTGACATAGAAATCTTTATATCTTCCAACACCTTTCACATTGCAGATTTGGATTGCTCTGTTGGGCCCAATACATTTTTTGCGGTTCAAAACATACTCGAAGCTGTGGAACTCAAATCTCAAAGCCAGGGATTAAATTCTCAGATATCTGAATTTCAAGTTTTCTTCAACGATCATACGCCAAATGATTTTAACATGCTCTTCAAATCCCTCCCTCAAAACAGGCGATACTATGCTGCGGGTGTCCCTGGTTCTTTCTACGGCCGCCTATTTCCTAAAGCTTCTATTCACTTTTTTCACGCTTCTTTTTGCCTTCATTGGCTTTCTAGAGCACCAAAAGAGGTAGCGGATAAAAACTCTTCAGCATGGAATAAAGGACGAATCCATTACCTAAATTCCAGAGAGGAAGTAGTAAAGGCTTATGAAGCTCAACATGGTGAGGACATGGAGTGCTTCCTGCATGCCAGGGCACAAGAGATTGTGTGTGGAGGATTGATGCTACTTATCGTTCCTGGCCTCCCTCATGGAGCCTCTCATTCTCATACCGAGGCAAAGGGATCCCATGAAGTACTAGGATCTTGCCTCATGGACATGGCCAGAAAGAAATTTGAAGAGCAACCGTCCATGTATGAGTCAGGGATGCCGGTTAATTTTCTTGCTGTGCTTAAACGCAAGGCAACCTGTTGTTATGGTGTGTTTGGTGTTTGTGAAGCTATAGTTAAACTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

293

Amino Acids

32.61

Weight (kDa)

6.23

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 230, 386, 412, 494
AclWI GGATC 3 cut(s) 699, 712, 730
AcoI YGGCCR 2 cut(s) 409, 741
AcsI RAATTY 5 cut(s) 26, 283, 299, 541, 752
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 1 cut(s) 717
AgsI TTSAA 6 cut(s) 32, 236, 305, 316, 352, 758
AjnI CCWGG 4 cut(s) 273, 394, 611, 658
AluBI AGCT 6 cut(s) 69, 148, 251, 428, 575, 860
AluI AGCT 6 cut(s) 69, 148, 251, 428, 575, 860
Alw21I GWGCWC 1 cut(s) 481
AlwI GGATC 3 cut(s) 699, 712, 730
AoxI GGCC 5 cut(s) 58, 212, 409, 661, 741
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 5 cut(s) 26, 283, 299, 541, 752
AspS9I GGNCC 3 cut(s) 59, 212, 213
AsuHPI GGTGA 1 cut(s) 596
BaeGI GKGCMC 2 cut(s) 216, 619
BalI TGGCCA 1 cut(s) 743
BamHI GGATCC 1 cut(s) 704
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 370
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 4 cut(s) 275, 396, 613, 660
BfaI CTAG 2 cut(s) 474, 719
BfmI CTRYAG 1 cut(s) 861
BisI GCNGC 2 cut(s) 384, 412
BlsI GCNGC 2 cut(s) 385, 413
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 4 cut(s) 275, 396, 613, 660
BmgT120I GGNCC 3 cut(s) 59, 212, 213
BmiI GGNNCC 5 cut(s) 6, 61, 214, 676, 706
BmrFI CCNGG 4 cut(s) 275, 396, 613, 660
BmsI GCATC 2 cut(s) 633, 777
BsaJI CCNNGG 4 cut(s) 274, 394, 612, 693
Bse118I RCCGGY 1 cut(s) 790
Bse3DI GCAATG 2 cut(s) 108, 186
BseBI CCWGG 4 cut(s) 275, 396, 613, 660
BseDI CCNNGG 4 cut(s) 274, 394, 612, 693
BseGI GGATG 1 cut(s) 792
BseMI GCAATG 2 cut(s) 108, 186
BseMII CTCAG 1 cut(s) 302
BseSI GKGCMC 2 cut(s) 216, 619
BseX3I CGGCCG 1 cut(s) 409
BseXI GCAGC 1 cut(s) 370
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 5 cut(s) 60, 214, 411, 663, 743
BsiEI CGRYCG 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 791
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 5 cut(s) 60, 214, 411, 663, 743
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 216, 481, 619
Bsp143I GATC 3 cut(s) 319, 704, 722
BspACI CCGC 4 cut(s) 230, 386, 412, 494
BspANI GGCC 5 cut(s) 60, 214, 411, 663, 743
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 5 cut(s) 6, 61, 214, 676, 706
BspPI GGATC 3 cut(s) 699, 712, 730
BspQI GCTCTTC 2 cut(s) 353, 753
BsrDI GCAATG 2 cut(s) 108, 186
BsrFI RCCGGY 1 cut(s) 790
BssAI RCCGGY 1 cut(s) 790
BssECI CCNNGG 4 cut(s) 274, 394, 612, 693
BssMI GATC 3 cut(s) 319, 704, 722
Bst2UI CCWGG 4 cut(s) 275, 396, 613, 660
Bst4CI ACNGT 1 cut(s) 768
Bst6I CTCTTC 3 cut(s) 353, 511, 753
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 792
BstKTI GATC 3 cut(s) 322, 707, 725
BstMBI GATC 3 cut(s) 319, 704, 722
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 2 cut(s) 66, 572
BstNI CCWGG 4 cut(s) 275, 396, 613, 660
BstNSI RCATGY 2 cut(s) 346, 611
BstSCI CCNGG 4 cut(s) 273, 394, 611, 658
BstSFI CTRYAG 1 cut(s) 861
BstSLI GKGCMC 2 cut(s) 216, 619
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 704, 722
BstYI RGATCY 2 cut(s) 704, 722
BstZI CGGCCG 1 cut(s) 409
BsuRI GGCC 5 cut(s) 60, 214, 411, 663, 743
BtsCI GGATG 1 cut(s) 792
Cac8I GCNNGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 790
Cfr13I GGNCC 3 cut(s) 59, 212, 213
Csp6I GTAC 1 cut(s) 716
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 1 cut(s) 288
DpnI GATC 3 cut(s) 321, 706, 724
DpnII GATC 3 cut(s) 319, 704, 722
EaeI YGGCCR 2 cut(s) 409, 741
EagI CGGCCG 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 353, 511, 753
EarI CTCTTC 3 cut(s) 353, 511, 753
EclXI CGGCCG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 294
Eco52I CGGCCG 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 492
EcoRII CCWGG 4 cut(s) 273, 394, 611, 658
EcoRV GATATC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 216
FaqI GGGAC 1 cut(s) 377
FauI CCCGC 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 384, 412
FokI GGATG 1 cut(s) 799
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 384, 412
FspBI CTAG 2 cut(s) 474, 719
GluI GCNGC 2 cut(s) 384, 412
HaeIII GGCC 5 cut(s) 60, 214, 411, 663, 743
HapII CCGG 1 cut(s) 791
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 146, 426
HinfI GANTC 3 cut(s) 99, 528, 779
HpaII CCGG 1 cut(s) 791
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 291, 298
Hpy188III TCNNGA 3 cut(s) 474, 546, 876
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 768
HpyCH4V TGCA 3 cut(s) 140, 191, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 572
HpyF3I CTNAG 1 cut(s) 288
Kzo9I GATC 3 cut(s) 319, 704, 722
LguI GCTCTTC 2 cut(s) 353, 753
LmnI GCTCC 2 cut(s) 10, 674
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 2 cut(s) 633, 777
MaeI CTAG 2 cut(s) 474, 719
MalI GATC 3 cut(s) 321, 706, 724
MboI GATC 3 cut(s) 319, 704, 722
MboII GAAGA 5 cut(s) 162, 304, 340, 498, 770
MflI RGATCY 2 cut(s) 704, 722
MhlI GDGCHC 3 cut(s) 216, 481, 619
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 7 cut(s) 26, 135, 283, 299, 541, 752, 796
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 1 cut(s) 198
Mox20I TGGCCA 1 cut(s) 743
MscI TGGCCA 1 cut(s) 743
MseI TTAA 5 cut(s) 281, 339, 795, 813, 867
MslI CAYNNNNRTG 1 cut(s) 737
Msp20I TGGCCA 1 cut(s) 743
MspI CCGG 1 cut(s) 791
MspR9I CCNGG 4 cut(s) 275, 396, 613, 660
MvaI CCWGG 4 cut(s) 275, 396, 613, 660
MwoI GCNNNNNNNGC 2 cut(s) 66, 572
NdeII GATC 3 cut(s) 319, 704, 722
NlaIV GGNNCC 5 cut(s) 6, 61, 214, 676, 706
NspI RCATGY 2 cut(s) 346, 611
PaeI GCATGC 1 cut(s) 611
PciSI GCTCTTC 2 cut(s) 353, 753
PfeI GAWTC 2 cut(s) 99, 528
PkrI GCNGC 2 cut(s) 385, 413
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
Psp6I CCWGG 4 cut(s) 273, 394, 611, 658
PspGI CCWGG 4 cut(s) 273, 394, 611, 658
PspN4I GGNNCC 5 cut(s) 6, 61, 214, 676, 706
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 59, 212, 213
PsuI RGATCY 2 cut(s) 704, 722
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
RseI CAYNNNNRTG 1 cut(s) 737
SapI GCTCTTC 2 cut(s) 353, 753
SaqAI TTAA 5 cut(s) 281, 339, 795, 813, 867
SatI GCNGC 2 cut(s) 384, 412
Sau3AI GATC 3 cut(s) 319, 704, 722
Sau96I GGNCC 3 cut(s) 59, 212, 213
ScaI AGTACT 1 cut(s) 717
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 4 cut(s) 275, 396, 613, 660
SduI GDGCHC 3 cut(s) 216, 481, 619
SfaNI GCATC 2 cut(s) 633, 777
SfcI CTRYAG 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 737
SphI GCATGC 1 cut(s) 611
Sse9I AATT 7 cut(s) 26, 135, 283, 299, 541, 752, 796
SsiI CCGC 4 cut(s) 230, 386, 412, 494
SspMI CTAG 2 cut(s) 474, 719
StyD4I CCNGG 4 cut(s) 273, 394, 611, 658
TaaI ACNGT 1 cut(s) 768
TaqI TCGA 1 cut(s) 246
TasI AATT 7 cut(s) 26, 135, 283, 299, 541, 752, 796
TatI WGTACW 1 cut(s) 715
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 2 cut(s) 99, 528
Tru1I TTAA 5 cut(s) 281, 339, 795, 813, 867
Tru9I TTAA 5 cut(s) 281, 339, 795, 813, 867
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 59, 452, 585, 726
XapI RAATTY 5 cut(s) 26, 283, 299, 541, 752
XbaI TCTAGA 1 cut(s) 473
XceI RCATGY 2 cut(s) 346, 611
XspI CTAG 2 cut(s) 474, 719
ZrmI AGTACT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.