Rroxscaffold_5G00345890

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000151
Physical Location & Seq
Reverse (-)
16514739 .. 16515035
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345890.1

Sequence Viewer

Length: 297 bp
ATGTATTCCATGTGCCCCCAAGAACTGGAAGCAGTTGTAGAACAAAATGGATCCTTTAGCATAGAGACATTGGAAACATTACCTCGTGTTTTAGCTGATGATGCTGTCTTAAATGCAAAACAATTTGCAGCTCATGGGAGAGCCGCTTTCGAGGGACTCATCAAACAGCAATTTGGAAAAGAAATCACAAATGAGCTCTTCGACTTGTATGGCAAGAAATTCGAGGAAGAACTCTCCATGTTTAAGCCAAGGAAGACAACTAGCATTCTTGTCGTGCTTAAGCGCAAGGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

98

Amino Acids

11.17

Weight (kDa)

5.86

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 95 4.5e-16 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 25
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 45, 58
AcsI RAATTY 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 25
AflII CTTAAG 1 cut(s) 278
AluBI AGCT 3 cut(s) 95, 131, 196
AluI AGCT 3 cut(s) 95, 131, 196
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 45, 58
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 17
BamHI GGATCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 140
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 253, 287
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 278
BisI GCNGC 2 cut(s) 129, 144
BlsI GCNGC 2 cut(s) 130, 145
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 198
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 17, 198
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 2 cut(s) 45, 58
BspQI GCTCTTC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 278
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
CfoI GCGC 1 cut(s) 285
CviAII CATG 3 cut(s) 10, 134, 238
CviJI RGCY 5 cut(s) 95, 131, 143, 196, 247
CviKI_1 RGCY 5 cut(s) 95, 131, 143, 196, 247
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 3 cut(s) 13, 137, 241
FaiI YATR 5 cut(s) 11, 62, 135, 210, 239
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 9, 133, 237
Fnu4HI GCNGC 2 cut(s) 129, 144
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 129, 144
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 129, 144
HhaI GCGC 1 cut(s) 285
Hin1II CATG 3 cut(s) 13, 137, 241
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 116, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92II CATG 3 cut(s) 13, 137, 241
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 50
LguI GCTCTTC 1 cut(s) 203
LpnPI CCDG 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 261
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 3 cut(s) 190, 239, 265
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 17, 198
MluCI AATT 3 cut(s) 122, 170, 218
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 3 cut(s) 93, 145, 217
MseI TTAA 3 cut(s) 110, 243, 279
MspCI CTTAAG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 50
NlaIII CATG 3 cut(s) 13, 137, 241
NlaIV GGNNCC 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 203
PctI GAATGC 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 2 cut(s) 130, 145
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 50
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 110, 243, 279
SatI GCNGC 2 cut(s) 129, 144
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 150
SduI GDGCHC 2 cut(s) 17, 198
SetI ASST 4 cut(s) 85, 97, 133, 198
SfaNI GCATC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 122, 170, 218
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 198
StyI CCWWGG 1 cut(s) 248
TaqI TCGA 3 cut(s) 150, 201, 222
TasI AATT 3 cut(s) 122, 170, 218
TauI GCSGC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 110, 243, 279
Tru9I TTAA 3 cut(s) 110, 243, 279
TseI GCWGC 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 25
Vha464I CTTAAG 1 cut(s) 278
XapI RAATTY 1 cut(s) 218
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.