pycom15g22390

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000151
Physical Location & Seq
Reverse (-)
16482147 .. 16483337
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22390.3

Sequence Viewer

Length: 858 bp
ATGAGCCCCCATGATCTTTGCCATTTCCCTCCCCATCTCCCAAAAGACAAAAATACAGTGATGCCTGCATCAGAGATGGCCCCAACAGACAAAGGCTTCAAAGAAAAATTGTCTGAAGCCTATGTAATGAAGGCTGGCGACGGCCCTAACAGCTATGCCAACAACTCCACTTTCCAGAAAAAAGCTGTGGATTCTGCCAGGGAAGTCATAAGAGAAGAAATTGCAGAAAAGATGGACACACGCACGTTGTCGTTGTCATCCAGTACCTTTCACATTGCAGATTTGGGTTGCTCAGTTGGGCCAAATACATTTTTTGCAGTTGAAAACATACTTGAAGCTGTGCAACTAAAGTATCAAACTCAAGGGCCGAGTTCTCGAACCCCCGAATTTCAAGTTTTCTTTAATGATCATTCCGGAAATGATTTTAACATGCTCTTCAAATCGCTGCCTCAGAATAGGAATTACTACGCCGTAGGCGTGCCTGGTTCTTTCTATGGTCGGCTATTTCCTAAAGCTTCCATTAACTTATTTCATTCTTCTTATTCCCTTAGTTGGCTTTCAAGAGTGCCAAAAGAGGTACTGGACAAGGATAGTCCTGCTTGGAATAAGGGAAAAATCCATTACTCAAATTCCACAAGCCCAGGAGAAGTAATAAGGGCTTATGAAGCTCAACATGCTGAGGACATGGAATGTTTCCTTTCTGCCAGGGCAGAAGAGATCGTGTATGGAGGATTGATGATGCTTATTATTATATGCCGCCCCAGTGGTACCCCTCATTTTGATACTTTGGCAACTGCGACCTATGAAACTTTAGGATCTTGCCTCATGGACATGACCAAAGAGGGATCTTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

286

Amino Acids

31.76

Weight (kDa)

6.0

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 767
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 1 cut(s) 757
AclWI GGATC 2 cut(s) 823, 853
AcsI RAATTY 2 cut(s) 386, 628
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 3 cut(s) 265, 579, 769
AfiI CCNNNNNNNGG 1 cut(s) 552
AgsI TTSAA 7 cut(s) 100, 323, 335, 392, 439, 561, 853
AjnI CCWGG 4 cut(s) 197, 481, 640, 704
AluBI AGCT 5 cut(s) 153, 185, 338, 515, 668
AluI AGCT 5 cut(s) 153, 185, 338, 515, 668
AlwI GGATC 2 cut(s) 823, 853
Aor13HI TCCGGA 1 cut(s) 413
AoxI GGCC 4 cut(s) 78, 142, 299, 365
ApeKI GCWGC 1 cut(s) 445
ApoI RAATTY 2 cut(s) 386, 628
Asp718I GGTACC 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 79, 143, 299, 365
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 432
BccI CCATC 3 cut(s) 42, 70, 226
BceAI ACGGC 2 cut(s) 157, 455
BciT130I CCWGG 4 cut(s) 199, 483, 642, 706
BclI TGATCA 1 cut(s) 406
BisI GCNGC 2 cut(s) 446, 757
BlsI GCNGC 2 cut(s) 447, 758
Bme1390I CCNGG 4 cut(s) 199, 483, 642, 706
BmgT120I GGNCC 4 cut(s) 79, 143, 299, 365
BmiI GGNNCC 2 cut(s) 81, 769
BmrFI CCNGG 4 cut(s) 199, 483, 642, 706
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 3 cut(s) 51, 77, 729
BmuI ACTGGG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 198, 640, 705
BsaWI WCCGGW 1 cut(s) 413
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse1I ACTGG 3 cut(s) 261, 585, 762
Bse3DI GCAATG 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 413
BseBI CCWGG 4 cut(s) 199, 483, 642, 706
BseDI CCNNGG 3 cut(s) 198, 640, 705
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 306, 464, 669
BseNI ACTGG 3 cut(s) 261, 585, 762
BseXI GCAGC 1 cut(s) 432
BshFI GGCC 4 cut(s) 80, 144, 301, 367
BshNI GGYRCC 1 cut(s) 767
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 552
BsnI GGCC 4 cut(s) 80, 144, 301, 367
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 5 cut(s) 13, 406, 717, 815, 845
BspACI CCGC 1 cut(s) 757
BspANI GGCC 4 cut(s) 80, 144, 301, 367
BspCNI CTCAG 3 cut(s) 305, 463, 670
BspEI TCCGGA 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 81, 769
BspPI GGATC 2 cut(s) 823, 853
BspQI GCTCTTC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 3 cut(s) 261, 585, 762
BssECI CCNNGG 3 cut(s) 198, 640, 705
BssMI GATC 5 cut(s) 13, 406, 717, 815, 845
Bst2UI CCWGG 4 cut(s) 199, 483, 642, 706
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 440, 708
BstC8I GCNNGC 3 cut(s) 66, 136, 479
BstDEI CTNAG 4 cut(s) 292, 450, 548, 678
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 5 cut(s) 16, 409, 720, 818, 848
BstMBI GATC 5 cut(s) 13, 406, 717, 815, 845
BstMWI GCNNNNNNNGC 3 cut(s) 150, 665, 674
BstNI CCWGG 4 cut(s) 199, 483, 642, 706
BstNSI RCATGY 2 cut(s) 433, 677
BstSCI CCNGG 4 cut(s) 197, 481, 640, 704
BstV1I GCAGC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 815, 845
BstYI RGATCY 2 cut(s) 815, 845
BsuRI GGCC 4 cut(s) 80, 144, 301, 367
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 63, 769
Cac8I GCNNGC 3 cut(s) 66, 136, 479
Cfr13I GGNCC 4 cut(s) 79, 143, 299, 365
Csp6I GTAC 3 cut(s) 264, 578, 768
CviAII CATG 6 cut(s) 11, 430, 674, 685, 826, 832
CviQI GTAC 3 cut(s) 264, 578, 768
DdeI CTNAG 4 cut(s) 292, 450, 548, 678
DpnI GATC 5 cut(s) 15, 408, 719, 817, 847
DpnII GATC 5 cut(s) 13, 406, 717, 815, 845
Eam1104I CTCTTC 2 cut(s) 440, 708
EarI CTCTTC 2 cut(s) 440, 708
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 135
EcoRII CCWGG 4 cut(s) 197, 481, 640, 704
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 6 cut(s) 14, 433, 677, 688, 829, 835
FatI CATG 6 cut(s) 10, 429, 673, 684, 825, 831
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 446, 757
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 446, 757
GluI GCNGC 2 cut(s) 446, 757
HaeIII GGCC 4 cut(s) 80, 144, 301, 367
HapII CCGG 1 cut(s) 414
Hin1II CATG 6 cut(s) 14, 433, 677, 688, 829, 835
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 414
Hpy188I TCNGA 3 cut(s) 73, 115, 453
Hpy188III TCNNGA 4 cut(s) 175, 375, 414, 561
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 5 cut(s) 68, 224, 278, 317, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 665, 674
HpyF3I CTNAG 4 cut(s) 292, 450, 548, 678
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 6 cut(s) 14, 433, 677, 688, 829, 835
Kpn2I TCCGGA 1 cut(s) 413
KpnI GGTACC 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 5 cut(s) 13, 406, 717, 815, 845
LguI GCTCTTC 1 cut(s) 440
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 3 cut(s) 51, 77, 729
MaeII ACGT 1 cut(s) 245
MalI GATC 5 cut(s) 15, 408, 719, 817, 847
MboI GATC 5 cut(s) 13, 406, 717, 815, 845
MboII GAAGA 4 cut(s) 227, 427, 528, 725
MflI RGATCY 2 cut(s) 815, 845
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 107, 219, 386, 460, 628
MnlI CCTC 8 cut(s) 39, 459, 568, 673, 722, 783, 833, 835
MroI TCCGGA 1 cut(s) 413
MseI TTAA 3 cut(s) 402, 426, 522
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 4 cut(s) 199, 483, 642, 706
MvaI CCWGG 4 cut(s) 199, 483, 642, 706
MwoI GCNNNNNNNGC 3 cut(s) 150, 665, 674
NdeII GATC 5 cut(s) 13, 406, 717, 815, 845
NlaIII CATG 6 cut(s) 14, 433, 677, 688, 829, 835
NlaIV GGNNCC 2 cut(s) 81, 769
NmeAIII GCCGAG 1 cut(s) 393
NspI RCATGY 2 cut(s) 433, 677
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 447, 758
Psp6I CCWGG 4 cut(s) 197, 481, 640, 704
PspGI CCWGG 4 cut(s) 197, 481, 640, 704
PspN4I GGNNCC 2 cut(s) 81, 769
PspPI GGNCC 4 cut(s) 79, 143, 299, 365
PsuI RGATCY 2 cut(s) 815, 845
RsaI GTAC 3 cut(s) 265, 579, 769
RsaNI GTAC 3 cut(s) 264, 578, 768
RseI CAYNNNNRTG 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 402, 426, 522
SatI GCNGC 2 cut(s) 446, 757
Sau3AI GATC 5 cut(s) 13, 406, 717, 815, 845
Sau96I GGNCC 4 cut(s) 79, 143, 299, 365
ScrFI CCNGG 4 cut(s) 199, 483, 642, 706
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 155, 187, 248, 269, 340, 517, 579, 670, 803
SfaNI GCATC 3 cut(s) 51, 77, 729
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 5 cut(s) 107, 219, 386, 460, 628
SsiI CCGC 1 cut(s) 757
StyD4I CCNGG 4 cut(s) 197, 481, 640, 704
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 376
TasI AATT 5 cut(s) 107, 219, 386, 460, 628
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 3 cut(s) 402, 426, 522
Tru9I TTAA 3 cut(s) 402, 426, 522
TscAI CASTG 2 cut(s) 63, 769
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 4 cut(s) 143, 521, 678, 819
TspRI CASTG 2 cut(s) 63, 769
XapI RAATTY 2 cut(s) 386, 628
XceI RCATGY 2 cut(s) 433, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.