FvH4_4g07940

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000151
Physical Location & Seq
Reverse (-)
7490608 .. 7491155
548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07940.t1

Sequence Viewer

Length: 387 bp
ATGAATGTGGCCTTTCAGCTTTTGGAATCCTCCCTCATGGACTTGGTCAGAAAGCGAGCAATTAGCGAGGAGAAAGTCGATTCGTTTAATATACCTATATACCCGATGTCTCCCAAAGAACTATCAACTCTTGTAGAAAGAAACGGTTCTTTTAGCATAGAGATGGTGGCAGACTTGCCAGTTTCCCCAGTTGACGACATTAGCTCAATACCAAAACTATTAGCTACTCACATGAGAGCTGGCATGGAGGAGCTCTTTAAGCAGCATTTTGGAGAAGAACTTTTTGACGAGCTCTTCGATTTGTATCAAAAAAAAAATGTGAAGAGCATATCTCCACCCTTATCGCAAGGAAGCCTAGTAACTTCTTTGTGGTGCTTAGACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

129

Amino Acids

14.44

Weight (kDa)

4.74

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 3 - 108 2.5e-24 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 6 cut(s) 19, 204, 224, 239, 253, 292
AluI AGCT 6 cut(s) 19, 204, 224, 239, 253, 292
Alw21I GWGCWC 2 cut(s) 255, 294
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp700I GAANNNNTTC 1 cut(s) 145
BanII GRGCYC 2 cut(s) 255, 294
Bbv12I GWGCWC 2 cut(s) 255, 294
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 356
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BsaBI GATNNNNATC 1 cut(s) 303
Bse1I ACTGG 2 cut(s) 179, 188
Bse8I GATNNNNATC 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 303
BseNI ACTGG 2 cut(s) 179, 188
BseRI GAGGAG 2 cut(s) 83, 263
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 255, 294
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 255, 294
BspANI GGCC 1 cut(s) 11
BspQI GCTCTTC 2 cut(s) 299, 317
BsrI ACTGG 2 cut(s) 179, 188
Bst4CI ACNGT 2 cut(s) 146, 383
Bst6I CTCTTC 2 cut(s) 299, 317
BstC8I GCNNGC 2 cut(s) 57, 241
BstDEI CTNAG 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 57, 241
CviAII CATG 3 cut(s) 37, 232, 244
CviJI RGCY 8 cut(s) 11, 19, 204, 224, 239, 253, 292, 354
CviKI_1 RGCY 8 cut(s) 11, 19, 204, 224, 239, 253, 292, 354
DdeI CTNAG 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 299, 317
EarI CTCTTC 2 cut(s) 299, 317
Ecl136II GAGCTC 2 cut(s) 253, 292
Eco24I GRGCYC 2 cut(s) 255, 294
Eco53kI GAGCTC 2 cut(s) 253, 292
EcoICRI GAGCTC 2 cut(s) 253, 292
EcoT38I GRGCYC 2 cut(s) 255, 294
FaeI CATG 3 cut(s) 40, 235, 247
FaiI YATR 8 cut(s) 38, 92, 98, 100, 158, 233, 245, 329
FatI CATG 3 cut(s) 36, 231, 243
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 2 cut(s) 255, 294
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 3 cut(s) 40, 235, 247
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 26, 80
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 146, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 376
Hsp92II CATG 3 cut(s) 40, 235, 247
LguI GCTCTTC 2 cut(s) 299, 317
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 3 cut(s) 192, 201, 225
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 3 cut(s) 286, 287, 334
MhlI GDGCHC 2 cut(s) 255, 294
MluCI AATT 1 cut(s) 60
MnlI CCTC 4 cut(s) 40, 44, 61, 241
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 2 cut(s) 87, 258
MslI CAYNNNNRTG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 259
NlaIII CATG 3 cut(s) 40, 235, 247
PciSI GCTCTTC 2 cut(s) 299, 317
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 26, 80
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 264
Psp124BI GAGCTC 2 cut(s) 255, 294
PsyI GACNNNGTC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 2 cut(s) 255, 294
SapI GCTCTTC 2 cut(s) 299, 317
SaqAI TTAA 2 cut(s) 87, 258
SatI GCNGC 1 cut(s) 263
SduI GDGCHC 2 cut(s) 255, 294
SetI ASST 7 cut(s) 21, 97, 206, 226, 241, 255, 294
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 60
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 2 cut(s) 255, 294
TaaI ACNGT 2 cut(s) 146, 383
TaqI TCGA 2 cut(s) 78, 297
TasI AATT 1 cut(s) 60
TfiI GAWTC 2 cut(s) 26, 80
Tru1I TTAA 2 cut(s) 87, 258
Tru9I TTAA 2 cut(s) 87, 258
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.