RchiOBHm_Chr7g0178971

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Forward (+)
1441965 .. 1442291
327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15949

Sequence Viewer

Length: 327 bp
ATGGGGCCTAACACGTTCCTAGCTGTGCAAAACATAATTGAAGCTGTGGAGGACAAGTACCAAACCCAAGGGCGCAATTTTGAGGTCCCCGAGTTTCAAGTCTTTTTCAGTGATCAAGCTGGAAATGATTTCAATAAGCTCTTCCAATCCCTCCCTCTGGAACTACTTCGCAATGGGCGTACCAGGATCTTTTACTCTCGCTTGTTTCCCAAGGCACATCTTCACCTTGTATACTCTTCATTTTCTCTGCAATGTCTCTCTAAAGTGCCTGAGGAAGTTTTAGACAGGAACTCCCCTGCTTGGAACAAAGGCAGGATTCATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

108

Amino Acids

12.61

Weight (kDa)

7.91

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 108 1.1e-34 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AclWI GGATC 1 cut(s) 194
AfaI GTAC 2 cut(s) 59, 181
AfiI CCNNNNNNNGG 2 cut(s) 157, 300
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 3 cut(s) 41, 98, 133
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 4 cut(s) 23, 44, 119, 139
AluI AGCT 4 cut(s) 23, 44, 119, 139
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 5, 85
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 2 cut(s) 20, 325
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 5, 85
BmiI GGNNCC 2 cut(s) 6, 87
BmrFI CCNGG 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 67, 210
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 300
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 2 cut(s) 178, 257
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 67, 210
BseLI CCNNNNNNNGG 2 cut(s) 157, 300
BseMI GCAATG 2 cut(s) 178, 257
BseMII CTCAG 1 cut(s) 261
BshFI GGCC 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 157, 300
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 7
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 2 cut(s) 112, 186
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 6, 87
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 178, 257
BssECI CCNNGG 2 cut(s) 67, 210
BssMI GATC 2 cut(s) 112, 186
BssNAI GTATAC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 67, 210
Bst1107I GTATAC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 146, 241
BstDEI CTNAG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 115, 189
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 112, 186
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 5, 85
Csp6I GTAC 2 cut(s) 58, 180
CviJI RGCY 5 cut(s) 7, 23, 44, 119, 139
CviKI_1 RGCY 5 cut(s) 7, 23, 44, 119, 139
CviQI GTAC 2 cut(s) 58, 180
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 114, 188
DpnII GATC 2 cut(s) 112, 186
Eam1104I CTCTTC 2 cut(s) 146, 241
EarI CTCTTC 2 cut(s) 146, 241
Eco130I CCWWGG 2 cut(s) 67, 210
Eco47I GGWCC 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 5, 85
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 2 cut(s) 67, 210
ErhI CCWWGG 2 cut(s) 67, 210
FaiI YATR 2 cut(s) 35, 232
FaqI GGGAC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 231
FspBI CTAG 2 cut(s) 20, 325
GlaI GCGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 7
HhaI GCGC 1 cut(s) 75
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 316
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 28, 250
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 14
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 112, 186
LguI GCTCTTC 1 cut(s) 146
LpnPI CCDG 8 cut(s) 105, 143, 169, 196, 271, 282, 298, 309
MaeI CTAG 2 cut(s) 20, 325
MaeII ACGT 1 cut(s) 14
MalI GATC 2 cut(s) 114, 188
MboI GATC 2 cut(s) 112, 186
MboII GAAGA 3 cut(s) 133, 212, 228
MflI RGATCY 1 cut(s) 186
MluCI AATT 2 cut(s) 36, 76
MnlI CCTC 5 cut(s) 43, 76, 161, 165, 265
MroXI GAANNNNTTC 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
NdeII GATC 2 cut(s) 112, 186
NlaIV GGNNCC 2 cut(s) 6, 87
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 6, 87
PspPI GGNCC 2 cut(s) 5, 85
PspPPI RGGWCCY 1 cut(s) 85
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 59, 181
RsaNI GTAC 2 cut(s) 58, 180
SapI GCTCTTC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 112, 186
Sau96I GGNCC 2 cut(s) 5, 85
ScrFI CCNGG 1 cut(s) 184
SetI ASST 7 cut(s) 17, 25, 46, 87, 121, 141, 228
SinI GGWCC 1 cut(s) 85
Sse9I AATT 2 cut(s) 36, 76
SspMI CTAG 2 cut(s) 20, 325
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 2 cut(s) 67, 210
TaiI ACGT 1 cut(s) 17
TasI AATT 2 cut(s) 36, 76
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 228, 308
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 2 cut(s) 20, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.