RchiOBHm_Chr7g0178991

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Forward (+)
1445869 .. 1447523
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15951

Sequence Viewer

Length: 1296 bp
ATGGCAGCAGAGGAAACTAGATTATCAGAAGCATTTCCAATGAAAGCTGGAGCTGGCCCCAACAGTTATGCCAAGAACTCCACATACCAGAGAGGAGTTGCGGATGCTGCCAAAGAACTTCTAACAAAGGCGATTGCAGAAAACCTTGACACAGAGATCTTGTTATCTTCAAACACATTTCACATTGCAGATTTGGGTTGCTCTGTCGGACCTAATACATTTTATGCAGTAAAAAACATCCTTGAATCTGTACAGTCTAAGTATCAATCTAAGGGGCCAAATTCCCAAATCCCTGAATTTCAAGTTTTCTTTAATGATCACACCACAAATGACTTCAACATTCTCTTCAAATCACTCCCTCACAACAGGCATTACCATGCCGCAGGTGTTCCTGGTTCTTTCTATGGTCGCATATTTCCTAATGCATCAGTTCACATTGTTCACTCTTCCTATACCAATCATTGGCTTTCTAGAGTACCAAAAGATGTAACGGACAGCAACTCTCCTGCTTGGAATAAAGGAAGAATACATTACTTAAAATCCACAGATGAAGTTGTGAGGGCCTATGAAGATCAATTCGCCAGGGACATGGAGTGCTTCCTGCATGTCAGATCACAAGAGATTGTGAATGGAGGACTAATGGTGCTTACTATTCCAGGCCGCCCTGATGGTACACCTCACTCACATGCTGCAGCAAACGTTACCTATCAACTTTTAGGAACTTGCCTCATTGAAATGGCTAAGAAGATATGGAAGAATAGAAATTTCTATAAAAGCATTCAATCTCTAGGAAAATATTGCATTCCTAATTTTTTTTTAATCATTTCAAATACAAATGATCAGAAAGATAAAATTAAACCAAGTAAAAGAAATTGGAGGATTTATGTCGCATGGTTTGTGGCTTGCAGAAGATACTTTTTCCTTAATGCTGCTACATGTTCTTTGAATATGCAGGGAATAGTTAGTGAAGACAAAGTAGATGCATTTAACATTCCAATATACTATATGTCTCCCAAAGAACTGGAAGCTGCTGTAGAACAAAATGGATGTTTTAGCGTAGAGGGTATGGAGATCTTACCTTATGTCTCAACACTTCACTCTGTCGCTAAAACTGCCCCACTCATTGCATTGCACGTCCGAGCTGCTACTGAAGGACTGTTTAAGCTGCATTTTGGAGATGCAATCTTAGATGAGCTATTCGACTTGTATTGCAAGAACCTTGTAGCACAACACTGCATCTTTAAGTCAACGGAGGTATTTAACTTTTTTGCTGTGCTTAAACGCAAGGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

431

Amino Acids

48.57

Weight (kDa)

8.57

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 49 - 249 2.5e-76 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 307 - 428 2.4e-22 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 462
AciI CCGC 3 cut(s) 101, 381, 661
AclI AACGTT 1 cut(s) 699
AcsI RAATTY 3 cut(s) 280, 296, 763
AcuI CTGAAG 1 cut(s) 1170
AfaI GTAC 3 cut(s) 252, 477, 673
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 1 cut(s) 935
AgsI TTSAA 9 cut(s) 171, 245, 302, 337, 349, 734, 782, 828, 946
AjiI CACGTC 1 cut(s) 1135
AjnI CCWGG 3 cut(s) 391, 581, 655
AluBI AGCT 6 cut(s) 47, 53, 1028, 1142, 1165, 1195
AluI AGCT 6 cut(s) 47, 53, 1028, 1142, 1165, 1195
Alw26I GTCTC 2 cut(s) 1014, 1090
AoxI GGCC 4 cut(s) 55, 275, 561, 658
ApeKI GCWGC 8 cut(s) 5, 107, 689, 692, 929, 1028, 1142, 1165
ApoI RAATTY 3 cut(s) 280, 296, 763
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 4 cut(s) 56, 209, 275, 561
AvaII GGWCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 975
BbvI GCAGC 8 cut(s) 17, 94, 676, 704, 916, 1015, 1129, 1152
BccI CCATC 1 cut(s) 662
BciT130I CCWGG 3 cut(s) 393, 583, 657
BclI TGATCA 2 cut(s) 316, 838
BcoDI GTCTC 2 cut(s) 1014, 1090
BfaI CTAG 3 cut(s) 18, 471, 788
BfmI CTRYAG 2 cut(s) 690, 1032
BfuAI ACCTGC 1 cut(s) 374
BglII AGATCT 2 cut(s) 156, 1071
Bme1390I CCNGG 3 cut(s) 393, 583, 657
Bme18I GGWCC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 1135
BmgT120I GGNCC 4 cut(s) 56, 209, 275, 561
BmiI GGNNCC 2 cut(s) 58, 276
BmrFI CCNGG 3 cut(s) 393, 583, 657
BmsI GCATC 5 cut(s) 94, 434, 970, 1168, 1245
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 582
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 1026
Bse3DI GCAATG 3 cut(s) 183, 1122, 1127
BseBI CCWGG 3 cut(s) 393, 583, 657
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 3 cut(s) 109, 237, 1052
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 3 cut(s) 183, 1122, 1127
BseNI ACTGG 1 cut(s) 1026
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 8 cut(s) 17, 94, 676, 704, 916, 1015, 1129, 1152
BshFI GGCC 4 cut(s) 57, 277, 563, 660
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 2 cut(s) 1014, 1090
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 2 cut(s) 777, 801
BsnI GGCC 4 cut(s) 57, 277, 563, 660
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
BspACI CCGC 3 cut(s) 101, 381, 661
BspANI GGCC 4 cut(s) 57, 277, 563, 660
BspLI GGNNCC 2 cut(s) 58, 276
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 374
BsrDI GCAATG 3 cut(s) 183, 1122, 1127
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 1026
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
Bst2UI CCWGG 3 cut(s) 393, 583, 657
Bst4CI ACNGT 3 cut(s) 65, 255, 1158
Bst6I CTCTTC 2 cut(s) 350, 451
BstAUI TGTACA 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 55, 904
BstDEI CTNAG 4 cut(s) 258, 270, 741, 1186
BstF5I GGATG 3 cut(s) 109, 237, 1052
BstKTI GATC 6 cut(s) 159, 319, 574, 614, 841, 1074
BstMAI GTCTC 2 cut(s) 1014, 1090
BstMBI GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
BstMWI GCNNNNNNNGC 2 cut(s) 107, 1112
BstNI CCWGG 3 cut(s) 393, 583, 657
BstNSI RCATGY 3 cut(s) 608, 689, 939
BstSCI CCNGG 3 cut(s) 391, 581, 655
BstSFI CTRYAG 2 cut(s) 690, 1032
BstV1I GCAGC 8 cut(s) 17, 94, 676, 704, 916, 1015, 1129, 1152
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 156, 1071
BstXI CCANNNNNNTGG 2 cut(s) 589, 1021
BstYI RGATCY 2 cut(s) 156, 1071
BsuRI GGCC 4 cut(s) 57, 277, 563, 660
BtrI CACGTC 1 cut(s) 1135
BtsCI GGATG 3 cut(s) 109, 237, 1052
BtsI GCAGTG 1 cut(s) 1231
BtsIMutI CAGTG 1 cut(s) 1231
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 2 cut(s) 55, 904
Cfr13I GGNCC 4 cut(s) 56, 209, 275, 561
Csp6I GTAC 3 cut(s) 251, 476, 672
CviAII CATG 6 cut(s) 377, 589, 605, 686, 891, 936
CviQI GTAC 3 cut(s) 251, 476, 672
DdeI CTNAG 4 cut(s) 258, 270, 741, 1186
DpnI GATC 6 cut(s) 158, 318, 573, 613, 840, 1073
DpnII GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
Eam1104I CTCTTC 2 cut(s) 350, 451
EarI CTCTTC 2 cut(s) 350, 451
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 1170
EcoO109I RGGNCCY 1 cut(s) 561
EcoRII CCWGG 3 cut(s) 391, 581, 655
EcoT22I ATGCAT 2 cut(s) 427, 985
FaeI CATG 6 cut(s) 380, 592, 608, 689, 894, 939
FaqI GGGAC 1 cut(s) 599
FatI CATG 6 cut(s) 376, 588, 604, 685, 890, 935
FbaI TGATCA 2 cut(s) 316, 838
FokI GGATG 3 cut(s) 116, 224, 1059
FspBI CTAG 3 cut(s) 18, 471, 788
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 4 cut(s) 57, 277, 563, 660
Hin1II CATG 6 cut(s) 380, 592, 608, 689, 894, 939
HincII GTYRAC 1 cut(s) 1248
HindII GTYRAC 1 cut(s) 1248
HinfI GANTC 1 cut(s) 245
Hpy166II GTNNAC 4 cut(s) 433, 442, 674, 1248
Hpy188I TCNGA 5 cut(s) 28, 209, 611, 843, 1139
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 4 cut(s) 433, 442, 674, 1248
HpyAV CCTTC 1 cut(s) 1145
HpyCH4III ACNGT 3 cut(s) 65, 255, 1158
HpyCH4IV ACGT 2 cut(s) 699, 1134
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 1112
HpyF3I CTNAG 4 cut(s) 258, 270, 741, 1186
HpySE526I ACGT 2 cut(s) 699, 1134
Hsp92II CATG 6 cut(s) 380, 592, 608, 689, 894, 939
Ksp22I TGATCA 2 cut(s) 316, 838
Kzo9I GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 8 cut(s) 17, 94, 676, 704, 916, 1015, 1129, 1152
LweI GCATC 5 cut(s) 94, 434, 970, 1168, 1245
MaeI CTAG 3 cut(s) 18, 471, 788
MaeII ACGT 2 cut(s) 699, 1134
MaeIII GTNAC 2 cut(s) 487, 700
MalI GATC 6 cut(s) 158, 318, 573, 613, 840, 1073
MboI GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
MboII GAAGA 9 cut(s) 159, 337, 438, 534, 581, 757, 766, 921, 980
MflI RGATCY 2 cut(s) 156, 1071
MluCI AATT 8 cut(s) 280, 296, 575, 763, 808, 852, 871, 1291
MmeI TCCRAC 1 cut(s) 187
Mph1103I ATGCAT 2 cut(s) 427, 985
MroXI GAANNNNTTC 1 cut(s) 33
MslI CAYNNNNRTG 3 cut(s) 375, 684, 734
MspR9I CCNGG 3 cut(s) 393, 583, 657
Mva1269I GAATGC 2 cut(s) 777, 801
MvaI CCWGG 3 cut(s) 393, 583, 657
MwoI GCNNNNNNNGC 2 cut(s) 107, 1112
NdeII GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
NlaIII CATG 6 cut(s) 380, 592, 608, 689, 894, 939
NlaIV GGNNCC 2 cut(s) 58, 276
NsiI ATGCAT 2 cut(s) 427, 985
NspI RCATGY 3 cut(s) 608, 689, 939
PaqCI CACCTGC 1 cut(s) 374
PciI ACATGT 1 cut(s) 935
PctI GAATGC 2 cut(s) 777, 801
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 462
PscI ACATGT 1 cut(s) 935
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 391, 581, 655
PspGI CCWGG 3 cut(s) 391, 581, 655
PspN4I GGNNCC 2 cut(s) 58, 276
PspPI GGNCC 4 cut(s) 56, 209, 275, 561
PsrI GAACNNNNNNTAC 2 cut(s) 68, 100
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 156, 1071
RsaI GTAC 3 cut(s) 252, 477, 673
RsaNI GTAC 3 cut(s) 251, 476, 672
RseI CAYNNNNRTG 3 cut(s) 375, 684, 734
Sau3AI GATC 6 cut(s) 156, 316, 571, 611, 838, 1071
Sau96I GGNCC 4 cut(s) 56, 209, 275, 561
ScrFI CCNGG 3 cut(s) 393, 583, 657
SfaNI GCATC 5 cut(s) 94, 434, 970, 1168, 1245
SfcI CTRYAG 2 cut(s) 690, 1032
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 3 cut(s) 375, 684, 734
Sse9I AATT 8 cut(s) 280, 296, 575, 763, 808, 852, 871, 1291
SsiI CCGC 3 cut(s) 101, 381, 661
SspI AATATT 1 cut(s) 797
SspMI CTAG 3 cut(s) 18, 471, 788
StyD4I CCNGG 3 cut(s) 391, 581, 655
TaaI ACNGT 3 cut(s) 65, 255, 1158
TaiI ACGT 2 cut(s) 702, 1137
TaqI TCGA 1 cut(s) 1200
TasI AATT 8 cut(s) 280, 296, 575, 763, 808, 852, 871, 1291
TatI WGTACW 1 cut(s) 250
TauI GCSGC 2 cut(s) 383, 663
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 1 cut(s) 1238
TseI GCWGC 8 cut(s) 5, 107, 689, 692, 929, 1028, 1142, 1165
TspDTI ATGAA 3 cut(s) 56, 564, 582
TspGWI ACGGA 2 cut(s) 506, 1265
TspRI CASTG 1 cut(s) 1238
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 3 cut(s) 280, 296, 763
XbaI TCTAGA 1 cut(s) 470
XceI RCATGY 3 cut(s) 608, 689, 939
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 3 cut(s) 18, 471, 788
Zsp2I ATGCAT 2 cut(s) 427, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.