RLG00000005392

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000151
Physical Location & Seq
Reverse (-)
67283119 .. 67283870
752 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005392

Sequence Viewer

Length: 714 bp
ATGGCAACAAGAGTGAATGGTGCAGACAGTCTCTACAGCTATAGCAAAAAGCATGTCGCTTTCATTTCATCACCATTACAAACTTCTTTGTACATTGATGGGGACAAAAGAAATGCTATAGATGCGGCCAAGGAACTGATCAAAGAGGCAGTTATCGACAAGCTTGACATCGAAAGCTTCTCATCCTCAAGCGCCTTTCGAGTTACAGATTTAGGCTGTGCAGTGGGGCCTAACACGTTCGTAGCTGTGCAAAACATACTTGAAGCTGTGGAGGAAAAGTACCGAACCCGAGGGCGCAATTCTGAGGTCCCCGAGTTTCAAGTCTTTTTCAGTGATCAAGCTGGAAATGATTTCAATCACCTCTTCCAATCCCTCCCGCCAGACAGGAACTACTTCACAACAGGCGTACCAGGATCTTTTTACTCTCGCTTGTTTCCCAAGGCACATCTTCACTTTGTATACTCTTCATTTTCTCTGCAATGTCTCTCTAAAGTGCCTGAGGAAGTTCTGGACAGGAGCTCCCCTGCTTGGAACAAAGGCAGGATTCATTACTCGAATTCTGCACACCAAGTTGTCGAGGCATATTCAGCTCAATATGCCAAGGACATGGAGTGCTTTCTAAATGCTCGAGCACAAGAGATCGTCGGTGGAGGGTTGATGGCGTTTGTTGTTCCCGGCCGCCCTGATGAAACCCCTCTTGCACAAAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

238

Amino Acids

26.4

Weight (kDa)

5.87

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 54 - 235 3.3e-69 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 459
AciI CCGC 3 cut(s) 125, 377, 679
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 2 cut(s) 126, 676
AcsI RAATTY 1 cut(s) 556
AfaI GTAC 3 cut(s) 92, 281, 408
AfiI CCNNNNNNNGG 1 cut(s) 528
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 3 cut(s) 263, 320, 355
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 8 cut(s) 39, 163, 177, 245, 266, 341, 519, 590
AluI AGCT 8 cut(s) 39, 163, 177, 245, 266, 341, 519, 590
Alw21I GWGCWC 2 cut(s) 521, 634
Alw26I GTCTC 2 cut(s) 35, 488
AlwI GGATC 1 cut(s) 421
Ama87I CYCGRG 3 cut(s) 288, 311, 627
AoxI GGCC 3 cut(s) 126, 227, 676
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 194, 297
AspS9I GGNCC 2 cut(s) 227, 307
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 63, 350
AvaI CYCGRG 3 cut(s) 288, 311, 627
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 498
BaeI ACNNNNGTAYC 2 cut(s) 390, 423
BanII GRGCYC 1 cut(s) 521
Bbv12I GWGCWC 2 cut(s) 521, 634
BccI CCATC 2 cut(s) 92, 652
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 2 cut(s) 138, 334
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 35, 488
BfmI CTRYAG 3 cut(s) 34, 40, 117
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 2 cut(s) 126, 679
BlsI GCNGC 2 cut(s) 127, 680
Bme1390I CCNGG 2 cut(s) 411, 675
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 3 cut(s) 288, 311, 627
BmgT120I GGNCC 2 cut(s) 227, 307
BmiI GGNNCC 2 cut(s) 228, 309
BmrFI CCNGG 2 cut(s) 411, 675
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 675
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 129, 289, 438, 600
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 503, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 485
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 4 cut(s) 129, 289, 438, 600
BseGI GGATG 1 cut(s) 182
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 2 cut(s) 294, 489
BseX3I CGGCCG 1 cut(s) 676
BsgI GTGCAG 3 cut(s) 42, 240, 546
Bsh1285I CGRYCG 1 cut(s) 679
BshFI GGCC 3 cut(s) 128, 229, 678
BsiEI CGRYCG 1 cut(s) 679
BsiHKAI GWGCWC 2 cut(s) 521, 634
BsiHKCI CYCGRG 3 cut(s) 288, 311, 627
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 116, 293
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 35, 488
BsmFI GGGAC 2 cut(s) 116, 293
BsnI GGCC 3 cut(s) 128, 229, 678
BsoBI CYCGRG 3 cut(s) 288, 311, 627
Bsp1286I GDGCHC 2 cut(s) 521, 634
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 4 cut(s) 138, 334, 413, 639
BspACI CCGC 3 cut(s) 125, 377, 679
BspANI GGCC 3 cut(s) 128, 229, 678
BspCNI CTCAG 2 cut(s) 295, 490
BspLI GGNNCC 2 cut(s) 228, 309
BspPI GGATC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 485
BsrGI TGTACA 1 cut(s) 90
BssECI CCNNGG 4 cut(s) 129, 289, 438, 600
BssMI GATC 4 cut(s) 138, 334, 413, 639
BssNAI GTATAC 1 cut(s) 460
BssT1I CCWWGG 3 cut(s) 129, 438, 600
Bst1107I GTATAC 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 368, 469
BstAUI TGTACA 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 303, 498
BstF5I GGATG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 297
BstKTI GATC 4 cut(s) 141, 337, 416, 642
BstMAI GTCTC 2 cut(s) 35, 488
BstMBI GATC 4 cut(s) 138, 334, 413, 639
BstMCI CGRYCG 1 cut(s) 679
BstMWI GCNNNNNNNGC 3 cut(s) 122, 587, 596
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 409, 673
BstSFI CTRYAG 3 cut(s) 34, 40, 117
BstX2I RGATCY 1 cut(s) 413
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 413
BstZ17I GTATAC 1 cut(s) 460
BstZI CGGCCG 1 cut(s) 676
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 3 cut(s) 128, 229, 678
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 228, 337
CfoI GCGC 2 cut(s) 194, 297
Cfr13I GGNCC 2 cut(s) 227, 307
Csp6I GTAC 3 cut(s) 91, 280, 407
CviAII CATG 2 cut(s) 53, 607
CviQI GTAC 3 cut(s) 91, 280, 407
DdeI CTNAG 2 cut(s) 303, 498
DpnI GATC 4 cut(s) 140, 336, 415, 641
DpnII GATC 4 cut(s) 138, 334, 413, 639
EaeI YGGCCR 2 cut(s) 126, 676
EagI CGGCCG 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 368, 469
EarI CTCTTC 2 cut(s) 368, 469
Ecl136II GAGCTC 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 676
Eco130I CCWWGG 3 cut(s) 129, 438, 600
Eco24I GRGCYC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 307
Eco52I CGGCCG 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 519
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 3 cut(s) 288, 311, 627
EcoICRI GAGCTC 1 cut(s) 519
EcoO109I RGGNCCY 2 cut(s) 227, 307
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 129, 438, 600
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 3 cut(s) 129, 438, 600
FaeI CATG 2 cut(s) 56, 610
FaiI YATR 8 cut(s) 42, 54, 119, 257, 460, 583, 597, 608
FaqI GGGAC 2 cut(s) 116, 293
FatI CATG 2 cut(s) 52, 606
FauI CCCGC 1 cut(s) 384
FbaI TGATCA 2 cut(s) 138, 334
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 126, 679
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 2 cut(s) 126, 679
GlaI GCGC 2 cut(s) 193, 296
GluI GCNGC 2 cut(s) 126, 679
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 3 cut(s) 128, 229, 678
HapII CCGG 1 cut(s) 675
HhaI GCGC 2 cut(s) 194, 297
Hin1II CATG 2 cut(s) 56, 610
Hin6I GCGC 2 cut(s) 192, 295
HinP1I GCGC 2 cut(s) 192, 295
HindIII AAGCTT 2 cut(s) 161, 175
HinfI GANTC 1 cut(s) 544
HpaII CCGG 1 cut(s) 675
HphI GGTGA 2 cut(s) 63, 350
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 6 cut(s) 23, 221, 250, 478, 563, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 587, 596
HpyF3I CTNAG 2 cut(s) 303, 498
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 2 cut(s) 56, 610
HspAI GCGC 2 cut(s) 192, 295
Ksp22I TGATCA 2 cut(s) 138, 334
Kzo9I GATC 4 cut(s) 138, 334, 413, 639
LmnI GCTCC 2 cut(s) 516, 524
LweI GCATC 1 cut(s) 112
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 140, 336, 415, 641
MboI GATC 4 cut(s) 138, 334, 413, 639
MboII GAAGA 3 cut(s) 355, 440, 456
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 2 cut(s) 521, 634
MluCI AATT 2 cut(s) 298, 556
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 712
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 411, 675
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 122, 587, 596
NciI CCSGG 1 cut(s) 675
NdeII GATC 4 cut(s) 138, 334, 413, 639
NlaIII CATG 2 cut(s) 56, 610
NlaIV GGNNCC 2 cut(s) 228, 309
NspI RCATGY 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 2 cut(s) 127, 680
PpuMI RGGWCCY 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 228, 309
PspPI GGNCC 2 cut(s) 227, 307
PspPPI RGGWCCY 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 627
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 3 cut(s) 92, 281, 408
RsaNI GTAC 3 cut(s) 91, 280, 407
SacI GAGCTC 1 cut(s) 521
SaqAI TTAA 1 cut(s) 712
SatI GCNGC 2 cut(s) 126, 679
Sau3AI GATC 4 cut(s) 138, 334, 413, 639
Sau96I GGNCC 2 cut(s) 227, 307
ScrFI CCNGG 2 cut(s) 411, 675
SduI GDGCHC 2 cut(s) 521, 634
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 3 cut(s) 34, 40, 117
Sfr274I CTCGAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 187, 627
SmoI CTYRAG 2 cut(s) 187, 627
Sse9I AATT 2 cut(s) 298, 556
SsiI CCGC 3 cut(s) 125, 377, 679
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 409, 673
StyI CCWWGG 3 cut(s) 129, 438, 600
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 239
TaqI TCGA 6 cut(s) 156, 171, 199, 554, 576, 628
TasI AATT 2 cut(s) 298, 556
TatI WGTACW 1 cut(s) 90
TauI GCSGC 2 cut(s) 128, 681
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 712
Tru9I TTAA 1 cut(s) 712
TscAI CASTG 2 cut(s) 228, 337
TspDTI ATGAA 5 cut(s) 52, 57, 456, 536, 702
TspRI CASTG 2 cut(s) 228, 337
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.