RchiOBHm_Chr1g0327261

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000151
Physical Location & Seq
Reverse (-)
16004832 .. 16006653
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55680

Sequence Viewer

Length: 1092 bp
ATGGCAGAAGAAATATCCAGTAAAGTTCCTGAAGCACATCCAATGAATGGTGGAGATGGGCCCAACAGCTATGCCAAGAACTCAACTCACCAGAGAAGAGTTGTGGATGTTGCTAAAGAGCTTCTAAACAAGGCAATTCTAGAAAAGCTTGACATAGACATCACGCTGTTGTCCAACACCTTTCACATTGCAGATCTGGGCTGCTCTGTTGGTCCAAATACATTTTATTCAGTGGAAAATATACTTGAAGCAGTGCAGTCCAAGTATCAAATCCAGGGGCAGAATTCCCAAATCCCAGAATTTCAAGTTTTCTTTAATGATCATGCTCAAAATGATTTCAACATGCTCTTCAAATCCCTCCCCCAGAACCGGCAATACTTTGCAGTCGGTGTGCCTGGTTCTTTCCACGGCCGGCTATTTCCTAAAGCTTCGATTCACATTGTTCACTCTTCTTATGCCATTCAATGGCTTTCTAGAGTACCAGAAGCGGTAGTGGACAGCAGCAGTTCTGCTTGGAATAAAGGACGAATCCATTATTCAAATTCCACAGATGAAGTAATAAGGGCTCATGAAACTCAATATAGTGAGGACATGGAGTGCTTCCTGCATTCCAGGGCACAAGAGATTATGTATGGAGGACTGATGATACTTATGATTCCAGGCCGCCCCGATGGAACTCCTCACTCCCATTCTCAGGCAAATATGACCTTACAATTTCTCGGATTATGCCTCATGGACATGGCTAGAAAGGGAGATGTTAGTGAAGAGAAAGTAGATTCATTTAACATACCTATGTATACCATGTCTCCCCAAGAACTGAAAACTGCTGTAGAACGAAATGGATGTTTTAGTATAGAGATAATGTCAGACTTACCTCATCATCAGTTGGTAGATGACACTATCACCCTATCTCAACTACTTGCCTCTCACCTGAGGGCGGGCATGGAGGGGATCGTCAAGCAGCAATTTGGAGAAGAAATCATAGATGAACTGTTTGACTTGTATCGGAATAAATGTGAAGAGCATGCCTCCATATTTAAGTCAGGGAAGTCATGTAACTTTCTTGTTGTGCTTAGGCGCACTGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

363

Amino Acids

40.85

Weight (kDa)

5.56

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 52 - 360 4.2e-106 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 47, 465
AccI GTMKAC 1 cut(s) 797
AciI CCGC 3 cut(s) 488, 664, 938
AclWI GGATC 1 cut(s) 959
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 3 cut(s) 283, 299, 541
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 5 cut(s) 47, 369, 465, 694, 937
AgsI TTSAA 6 cut(s) 248, 305, 340, 352, 464, 540
AjnI CCWGG 4 cut(s) 273, 394, 611, 658
AluBI AGCT 4 cut(s) 69, 121, 148, 428
AluI AGCT 4 cut(s) 69, 121, 148, 428
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 1 cut(s) 959
AoxI GGCC 3 cut(s) 59, 409, 661
ApaI GGGCCC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 201, 501, 961
ApoI RAATTY 3 cut(s) 283, 299, 541
AspLEI GCGC 1 cut(s) 1080
AspS9I GGNCC 3 cut(s) 59, 60, 212
AsuHPI GGTGA 3 cut(s) 80, 895, 920
AvaII GGWCC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 932
BaeGI GKGCMC 2 cut(s) 63, 619
BanII GRGCYC 2 cut(s) 63, 568
BbvI GCAGC 3 cut(s) 188, 513, 973
BccI CCATC 2 cut(s) 50, 665
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 4 cut(s) 275, 396, 613, 660
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 3 cut(s) 140, 474, 744
BfmI CTRYAG 2 cut(s) 828, 1083
BglII AGATCT 1 cut(s) 193
BisI GCNGC 4 cut(s) 202, 502, 664, 962
BlsI GCNGC 4 cut(s) 203, 503, 665, 963
Bme1390I CCNGG 4 cut(s) 275, 396, 613, 660
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 59, 60, 212
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 4 cut(s) 275, 396, 613, 660
BplI GAGNNNNNCTC 2 cut(s) 1013, 1045
Bpu10I CCTNAGC 1 cut(s) 1073
BsaJI CCNNGG 3 cut(s) 274, 406, 612
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 369, 465, 694, 937
Bse118I RCCGGY 2 cut(s) 369, 411
Bse1I ACTGG 1 cut(s) 18
Bse21I CCTNAGG 1 cut(s) 932
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 4 cut(s) 275, 396, 613, 660
BseDI CCNNGG 3 cut(s) 274, 406, 612
BseGI GGATG 3 cut(s) 37, 112, 848
BseLI CCNNNNNNNGG 5 cut(s) 47, 369, 465, 694, 937
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 707, 923
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 669
BseSI GKGCMC 2 cut(s) 63, 619
BseX3I CGGCCG 1 cut(s) 409
BseXI GCAGC 3 cut(s) 188, 513, 973
BsgI GTGCAG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 3 cut(s) 61, 411, 663
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 370, 412
BslI CCNNNNNNNGG 5 cut(s) 47, 369, 465, 694, 937
BsmAI GTCTC 1 cut(s) 810
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 3 cut(s) 61, 411, 663
Bsp120I GGGCCC 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 63, 568, 619
Bsp143I GATC 3 cut(s) 193, 319, 951
BspACI CCGC 3 cut(s) 488, 664, 938
BspANI GGCC 3 cut(s) 61, 411, 663
BspCNI CTCAG 2 cut(s) 706, 924
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 1 cut(s) 959
BspQI GCTCTTC 2 cut(s) 353, 1014
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 369, 411
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 2 cut(s) 369, 411
BssECI CCNNGG 3 cut(s) 274, 406, 612
BssMI GATC 3 cut(s) 193, 319, 951
BssNAI GTATAC 1 cut(s) 798
Bst1107I GTATAC 1 cut(s) 798
Bst2UI CCWGG 4 cut(s) 275, 396, 613, 660
Bst4CI ACNGT 1 cut(s) 993
Bst6I CTCTTC 5 cut(s) 91, 353, 454, 759, 1014
BstC8I GCNNGC 3 cut(s) 413, 940, 1026
BstDEI CTNAG 3 cut(s) 693, 932, 1073
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 3 cut(s) 37, 112, 848
BstHHI GCGC 1 cut(s) 1080
BstKTI GATC 3 cut(s) 196, 322, 954
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 3 cut(s) 193, 319, 951
BstMCI CGRYCG 1 cut(s) 412
BstNI CCWGG 4 cut(s) 275, 396, 613, 660
BstNSI RCATGY 2 cut(s) 346, 1028
BstSCI CCNGG 4 cut(s) 273, 394, 611, 658
BstSFI CTRYAG 2 cut(s) 828, 1083
BstSLI GKGCMC 2 cut(s) 63, 619
BstV1I GCAGC 3 cut(s) 188, 513, 973
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZ17I GTATAC 1 cut(s) 798
BstZI CGGCCG 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 932
BsuRI GGCC 3 cut(s) 61, 411, 663
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 3 cut(s) 37, 112, 848
BtsI GCAGTG 2 cut(s) 258, 1080
BtsIMutI CAGTG 3 cut(s) 237, 258, 1080
Cac8I GCNNGC 3 cut(s) 413, 940, 1026
CciI TCATGA 1 cut(s) 568
CfoI GCGC 1 cut(s) 1080
Cfr10I RCCGGY 2 cut(s) 369, 411
Cfr13I GGNCC 3 cut(s) 59, 60, 212
Csp6I GTAC 1 cut(s) 479
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 3 cut(s) 693, 932, 1073
DpnI GATC 3 cut(s) 195, 321, 953
DpnII GATC 3 cut(s) 193, 319, 951
EaeI YGGCCR 1 cut(s) 409
EagI CGGCCG 1 cut(s) 409
Eam1104I CTCTTC 5 cut(s) 91, 353, 454, 759, 1014
EarI CTCTTC 5 cut(s) 91, 353, 454, 759, 1014
EclXI CGGCCG 1 cut(s) 409
Eco24I GRGCYC 2 cut(s) 63, 568
Eco47I GGWCC 1 cut(s) 212
Eco52I CGGCCG 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 4 cut(s) 273, 394, 611, 658
EcoT38I GRGCYC 2 cut(s) 63, 568
FauI CCCGC 1 cut(s) 931
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 4 cut(s) 202, 502, 664, 962
FokI GGATG 3 cut(s) 24, 119, 855
FriOI GRGCYC 2 cut(s) 63, 568
Fsp4HI GCNGC 4 cut(s) 202, 502, 664, 962
FspBI CTAG 3 cut(s) 140, 474, 744
GlaI GCGC 1 cut(s) 1079
GluI GCNGC 4 cut(s) 202, 502, 664, 962
HaeIII GGCC 3 cut(s) 61, 411, 663
HapII CCGG 2 cut(s) 370, 412
HhaI GCGC 1 cut(s) 1080
Hin6I GCGC 1 cut(s) 1078
HinP1I GCGC 1 cut(s) 1078
HindIII AAGCTT 2 cut(s) 146, 426
HinfI GANTC 4 cut(s) 433, 528, 655, 776
HpaII CCGG 2 cut(s) 370, 412
HphI GGTGA 3 cut(s) 80, 895, 920
Hpy166II GTNNAC 3 cut(s) 445, 496, 798
Hpy188I TCNGA 3 cut(s) 722, 868, 1008
Hpy188III TCNNGA 4 cut(s) 29, 140, 474, 569
Hpy8I GTNNAC 3 cut(s) 445, 496, 798
HpyCH4III ACNGT 1 cut(s) 993
HpyCH4V TGCA 5 cut(s) 191, 256, 383, 607, 1085
HpyF3I CTNAG 3 cut(s) 693, 932, 1073
HspAI GCGC 1 cut(s) 1078
KroI GCCGGC 1 cut(s) 411
KroNI GCCGGC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 193, 319, 951
LguI GCTCTTC 2 cut(s) 353, 1014
Lsp1109I GCAGC 3 cut(s) 188, 513, 973
MaeI CTAG 3 cut(s) 140, 474, 744
MaeIII GTNAC 1 cut(s) 1055
MalI GATC 3 cut(s) 195, 321, 953
MboI GATC 3 cut(s) 193, 319, 951
MboII GAAGA 7 cut(s) 20, 108, 340, 441, 776, 986, 1031
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 3 cut(s) 63, 568, 619
MluCI AATT 6 cut(s) 135, 283, 299, 541, 713, 965
MmeI TCCRAC 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 411
MseI TTAA 3 cut(s) 315, 783, 1038
MslI CAYNNNNRTG 2 cut(s) 737, 791
MspI CCGG 2 cut(s) 370, 412
MspR9I CCNGG 4 cut(s) 275, 396, 613, 660
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 4 cut(s) 275, 396, 613, 660
NaeI GCCGGC 1 cut(s) 413
NdeII GATC 3 cut(s) 193, 319, 951
NgoMIV GCCGGC 1 cut(s) 411
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 2 cut(s) 346, 1028
PaeI GCATGC 1 cut(s) 1028
PagI TCATGA 1 cut(s) 568
PciSI GCTCTTC 2 cut(s) 353, 1014
PctI GAATGC 1 cut(s) 607
PdiI GCCGGC 1 cut(s) 413
PfeI GAWTC 4 cut(s) 433, 528, 655, 776
PflMI CCANNNNNTGG 2 cut(s) 47, 465
PkrI GCNGC 4 cut(s) 203, 503, 665, 963
Psp6I CCWGG 4 cut(s) 273, 394, 611, 658
PspGI CCWGG 4 cut(s) 273, 394, 611, 658
PspN4I GGNNCC 1 cut(s) 61
PspOMI GGGCCC 1 cut(s) 59
PspPI GGNCC 3 cut(s) 59, 60, 212
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 2 cut(s) 737, 791
SapI GCTCTTC 2 cut(s) 353, 1014
SaqAI TTAA 3 cut(s) 315, 783, 1038
SatI GCNGC 4 cut(s) 202, 502, 664, 962
Sau3AI GATC 3 cut(s) 193, 319, 951
Sau96I GGNCC 3 cut(s) 59, 60, 212
ScrFI CCNGG 4 cut(s) 275, 396, 613, 660
SduI GDGCHC 3 cut(s) 63, 568, 619
SetI ASST 9 cut(s) 71, 123, 150, 182, 430, 710, 793, 877, 933
SfcI CTRYAG 2 cut(s) 828, 1083
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 737, 791
SphI GCATGC 1 cut(s) 1028
Sse9I AATT 6 cut(s) 135, 283, 299, 541, 713, 965
SsiI CCGC 3 cut(s) 488, 664, 938
SspMI CTAG 3 cut(s) 140, 474, 744
StyD4I CCNGG 4 cut(s) 273, 394, 611, 658
TaaI ACNGT 1 cut(s) 993
TaqI TCGA 1 cut(s) 431
TasI AATT 6 cut(s) 135, 283, 299, 541, 713, 965
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 4 cut(s) 433, 528, 655, 776
Tru1I TTAA 3 cut(s) 315, 783, 1038
Tru9I TTAA 3 cut(s) 315, 783, 1038
TscAI CASTG 3 cut(s) 237, 258, 1087
TseI GCWGC 3 cut(s) 201, 501, 961
TspDTI ATGAA 5 cut(s) 59, 567, 585, 768, 1002
TspRI CASTG 3 cut(s) 237, 258, 1087
Van91I CCANNNNNTGG 2 cut(s) 47, 465
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 3 cut(s) 283, 299, 541
XbaI TCTAGA 2 cut(s) 139, 473
XceI RCATGY 2 cut(s) 346, 1028
XmiI GTMKAC 1 cut(s) 797
XspI CTAG 3 cut(s) 140, 474, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.