FvH4_7g18490

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000151
Physical Location & Seq
Forward (+)
15432077 .. 15433388
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18490.t1

Sequence Viewer

Length: 1002 bp
ATGGCAGCAGATGAAGTATGTCCTATGAAAGGTGGGGATGGCCCCAATAGCTATGCCAAGAACTCCACATACCAGAAAGCAGCGGTGGATGCTGCAAAAGAACTTGTAAGCAAGGCAATTGCAGAAAATCTTGACCTAGAATTCTTGTTAGCTTCCAGCAGTACTTTTCATATTGCGGATTTGGGTTGCTCTATTGGACCAAATACATTTTGGGCAGTTGACAACATTCTTGAAGCTGTGAAATTGAAAATTCAAGGGATGAAAAAGTCTCCCATGACCCTTGAATTTCAAGTTTTCTTCAATGATCATGCCCCTAATGACTTCAACATGCTCTTCAAATCACTCCCTATGAATAGGCAATATTATGCTGCTGGTGTGCCAGTGCCAAAAGCTGTAGTGGACAGAACCTCTCCTGCTTGGAATAAAGGAAAAATCCAATTCTCTTATTCCTCGGATGAAGTTATAAGGGCTTTTGAAGCTCAATTTGCTGAGGACATGGAGTGCTTCCTGAATGCGAGGGCACATGAAATTGTGCATGGAGGACTCATGGCACTTATTGTTCCAGGCCGACCCGATGGTACCCCTCATTCAAAATCTTCACTGAATGTGATCTATCACATTTTAGGATCTTGCCTCATGGAAATGGCAAGGAAGGGAGTAGTTAGTGAAGAGAAAGCGGATGGATTTAACATACCAATGTACTACATGTCTCCTCAAGAACTGAAAGCTACTGTAGAACTAAATGGAAGTTTCACTATAGAGTGTATGGAAAACTTACCTCGTCTCTCCACAATTGACGATGTCACTGAAAGTGCCGAACTCGTTGCATCTCATGTTAGAGCTGTCACGGAGGGTCTCTTCCAGCAGCAATTCGGAGACGAAATCTTAGATGAGCTCTATGACTTGTATCTTACCAAACTCGAAGAGCAGCCTTCCATCTTTGACCCAACAAAGGCTATTAACTTTCTTCTTGTGCTTAAACGCCAAGGCAAATTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

334

Amino Acids

36.91

Weight (kDa)

4.99

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 51 - 127 1.4e-23 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 128 - 328 2.6e-51 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AciI CCGC 3 cut(s) 83, 176, 677
AclWI GGATC 1 cut(s) 634
AcsI RAATTY 3 cut(s) 140, 249, 284
AfaI GTAC 3 cut(s) 163, 580, 701
AfiI CCNNNNNNNGG 2 cut(s) 29, 952
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 8 cut(s) 51, 152, 236, 392, 479, 728, 842, 895
AluI AGCT 8 cut(s) 51, 152, 236, 392, 479, 728, 842, 895
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 5 cut(s) 273, 714, 788, 860, 870
AlwI GGATC 1 cut(s) 634
AoxI GGCC 2 cut(s) 40, 565
ApeKI GCWGC 6 cut(s) 5, 80, 92, 368, 865, 928
ApoI RAATTY 3 cut(s) 140, 249, 284
Asp718I GGTACC 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 41, 197
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 897
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 6 cut(s) 17, 79, 92, 355, 877, 940
BccI CCATC 4 cut(s) 32, 569, 674, 944
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 5 cut(s) 273, 714, 788, 860, 870
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 3 cut(s) 393, 732, 756
BisI GCNGC 6 cut(s) 6, 81, 93, 369, 866, 929
BlsI GCNGC 6 cut(s) 7, 82, 94, 370, 867, 930
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 41, 197
BmiI GGNNCC 2 cut(s) 43, 580
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 79, 836
Bpu10I CCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 2 cut(s) 450, 985
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 952
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 450, 985
BseGI GGATG 5 cut(s) 43, 94, 264, 460, 685
BseLI CCNNNNNNNGG 2 cut(s) 29, 952
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 523
BseXI GCAGC 6 cut(s) 17, 79, 92, 355, 877, 940
BshFI GGCC 2 cut(s) 42, 567
BshNI GGYRCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 897
BslI CCNNNNNNNGG 2 cut(s) 29, 952
BsmAI GTCTC 5 cut(s) 273, 714, 788, 860, 870
BsmBI CGTCTC 2 cut(s) 788, 870
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 2 cut(s) 42, 567
Bso31I GGTCTC 1 cut(s) 860
Bsp1286I GDGCHC 2 cut(s) 523, 897
Bsp143I GATC 3 cut(s) 304, 609, 626
BspACI CCGC 3 cut(s) 83, 176, 677
BspANI GGCC 2 cut(s) 42, 567
BspCNI CTCAG 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 43, 580
BspPI GGATC 1 cut(s) 634
BspQI GCTCTTC 2 cut(s) 338, 918
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 860
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 450, 985
BssMI GATC 3 cut(s) 304, 609, 626
BssT1I CCWWGG 1 cut(s) 985
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 4 cut(s) 338, 663, 863, 918
BstDEI CTNAG 2 cut(s) 489, 886
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 5 cut(s) 43, 94, 264, 460, 685
BstKTI GATC 3 cut(s) 307, 612, 629
BstMAI GTCTC 5 cut(s) 273, 714, 788, 860, 870
BstMBI GATC 3 cut(s) 304, 609, 626
BstMWI GCNNNNNNNGC 4 cut(s) 48, 89, 476, 485
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 2 cut(s) 331, 709
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 3 cut(s) 393, 732, 756
BstSLI GKGCMC 1 cut(s) 523
BstV1I GCAGC 6 cut(s) 17, 79, 92, 355, 877, 940
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
BsuRI GGCC 2 cut(s) 42, 567
BtsCI GGATG 5 cut(s) 43, 94, 264, 460, 685
BtsIMutI CAGTG 3 cut(s) 387, 599, 804
Cfr13I GGNCC 2 cut(s) 41, 197
Csp6I GTAC 3 cut(s) 162, 579, 700
CviQI GTAC 3 cut(s) 162, 579, 700
DdeI CTNAG 2 cut(s) 489, 886
DpnI GATC 3 cut(s) 306, 611, 628
DpnII GATC 3 cut(s) 304, 609, 626
Eam1104I CTCTTC 4 cut(s) 338, 663, 863, 918
EarI CTCTTC 4 cut(s) 338, 663, 863, 918
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 985
Eco24I GRGCYC 1 cut(s) 897
Eco31I GGTCTC 1 cut(s) 860
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 895
EcoICRI GAGCTC 1 cut(s) 895
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 985
EcoT38I GRGCYC 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 985
Esp3I CGTCTC 2 cut(s) 788, 870
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 6 cut(s) 6, 81, 93, 369, 866, 929
FokI GGATG 5 cut(s) 50, 101, 271, 467, 692
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 6 cut(s) 6, 81, 93, 369, 866, 929
FspBI CTAG 1 cut(s) 137
GluI GCNGC 6 cut(s) 6, 81, 93, 369, 866, 929
HaeIII GGCC 2 cut(s) 42, 567
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 543
Hpy166II GTNNAC 2 cut(s) 220, 400
Hpy188I TCNGA 2 cut(s) 454, 875
Hpy188III TCNNGA 4 cut(s) 131, 230, 508, 716
Hpy8I GTNNAC 2 cut(s) 220, 400
HpyAV CCTTC 2 cut(s) 646, 942
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4V TGCA 4 cut(s) 95, 122, 535, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 89, 476, 485
HpyF3I CTNAG 2 cut(s) 489, 886
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 304, 609, 626
LguI GCTCTTC 2 cut(s) 338, 918
LpnPI CCDG 9 cut(s) 86, 169, 357, 393, 426, 521, 549, 576, 875
Lsp1109I GCAGC 6 cut(s) 17, 79, 92, 355, 877, 940
LweI GCATC 2 cut(s) 79, 836
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 802, 844
MalI GATC 3 cut(s) 306, 611, 628
MboI GATC 3 cut(s) 304, 609, 626
MboII GAAGA 7 cut(s) 289, 325, 588, 680, 850, 935, 959
MfeI CAATTG 2 cut(s) 117, 792
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 2 cut(s) 523, 897
MlyI GAGTC 1 cut(s) 537
MseI TTAA 3 cut(s) 687, 960, 978
MslI CAYNNNNRTG 2 cut(s) 641, 695
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 2 cut(s) 117, 792
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 4 cut(s) 48, 89, 476, 485
NdeII GATC 3 cut(s) 304, 609, 626
NlaIV GGNNCC 2 cut(s) 43, 580
NmuCI GTSAC 2 cut(s) 802, 844
NspI RCATGY 2 cut(s) 331, 709
PciI ACATGT 1 cut(s) 705
PciSI GCTCTTC 2 cut(s) 338, 918
PctI GAATGC 1 cut(s) 517
PflFI GACNNNGTC 1 cut(s) 800
PkrI GCNGC 6 cut(s) 7, 82, 94, 370, 867, 930
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
PscI ACATGT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 897
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 43, 580
PspPI GGNCC 2 cut(s) 41, 197
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PsuI RGATCY 1 cut(s) 626
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 3 cut(s) 163, 580, 701
RsaNI GTAC 3 cut(s) 162, 579, 700
RseI CAYNNNNRTG 2 cut(s) 641, 695
SacI GAGCTC 1 cut(s) 897
SapI GCTCTTC 2 cut(s) 338, 918
SaqAI TTAA 3 cut(s) 687, 960, 978
SatI GCNGC 6 cut(s) 6, 81, 93, 369, 866, 929
Sau3AI GATC 3 cut(s) 304, 609, 626
Sau96I GGNCC 2 cut(s) 41, 197
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 523, 897
SfaNI GCATC 2 cut(s) 79, 836
SfcI CTRYAG 3 cut(s) 393, 732, 756
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 641, 695
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SsiI CCGC 3 cut(s) 83, 176, 677
SspI AATATT 1 cut(s) 362
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 897
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 985
TaaI ACNGT 1 cut(s) 733
TaqI TCGA 1 cut(s) 921
TatI WGTACW 2 cut(s) 161, 699
Tru1I TTAA 3 cut(s) 687, 960, 978
Tru9I TTAA 3 cut(s) 687, 960, 978
TscAI CASTG 3 cut(s) 387, 606, 811
TseFI GTSAC 2 cut(s) 802, 844
TseI GCWGC 6 cut(s) 5, 80, 92, 368, 865, 928
Tsp45I GTSAC 2 cut(s) 802, 844
TspDTI ATGAA 7 cut(s) 27, 41, 158, 275, 365, 471, 540
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 3 cut(s) 387, 606, 811
Tth111I GACNNNGTC 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 3 cut(s) 140, 249, 284
XceI RCATGY 2 cut(s) 331, 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.