Rorug03G0223500

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000151
Physical Location & Seq
Reverse (-)
20386883 .. 20389321
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0223500.1

Sequence Viewer

Length: 537 bp
ATGTCGTCCCGGCACGTCTTCCTCCGGCAAGCCTCCTCCGGGAACCGCCGGCGGCCTCTGCTCAAAACCCACGTCACCGACTGCAAGGACCGTGTGGCCGAAGTCGCCGGCGGGACCGCCGCCGAGTGCGCTGCCGTGTGTTGCTGCTGCCCGTGTGGGCTGGTCAATCTGCTAGTCCTGGTAATCTACAAGGTCCCGGTAAGGCTCTGCCGCCGCGTCATGAGGAAGAACCGCCGGCAGAGGCTCATCAAGAAAGGGCTTCTTCCGCCGCGCCACGTGCAATGCACGTGCGGCTGCGACGGCCTGGAGCTGCAGTTCCACCCGGTCGGGTTCGAGTCCCTGACGTCGGAGTTCAAGGCGGTGCAGAAGTTGGTGATGGAAGAGGAGTCGTCTGACGAGGATGTGATTCAGCTCGAGAAGGAGATGTGGGATCGGTTTTACGGCACTGGATTTTGGAGAAGCCCAACTCAGAGAGAAACTCCCTCCATCTCCAACTCCAACTCCAACTCCAACTCCAAGATGATCACCGGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

9.16

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccII CGCG 2 cut(s) 216, 271
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 96
AcvI CACGTG 2 cut(s) 277, 288
AcyI GRCGYC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 39, 346
AgeI ACCGGT 1 cut(s) 527
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 2 cut(s) 16, 73
AjnI CCWGG 2 cut(s) 177, 303
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 310, 412
AluI AGCT 2 cut(s) 310, 412
AlwI GGATC 1 cut(s) 438
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 3 cut(s) 53, 96, 301
ApeKI GCWGC 5 cut(s) 131, 144, 147, 294, 310
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AsiGI ACCGGT 1 cut(s) 527
AspLEI GCGC 2 cut(s) 131, 273
AspS9I GGNCC 3 cut(s) 88, 114, 193
AsuC2I CCSGG 4 cut(s) 10, 40, 197, 323
AsuHPI GGTGA 3 cut(s) 67, 385, 517
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 3 cut(s) 88, 114, 193
BbrPI CACGTG 2 cut(s) 277, 288
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 5 cut(s) 118, 131, 134, 281, 297
BccI CCATC 2 cut(s) 370, 494
BceAI ACGGC 3 cut(s) 119, 316, 457
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 179, 305
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 4 cut(s) 10, 40, 197, 323
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 311
Bme1390I CCNGG 6 cut(s) 10, 40, 179, 197, 305, 323
Bme18I GGWCC 3 cut(s) 88, 114, 193
BmeT110I CYCGRG 1 cut(s) 413
BmgBI CACGTC 2 cut(s) 16, 73
BmgT120I GGNCC 3 cut(s) 88, 114, 193
BmiI GGNNCC 3 cut(s) 44, 115, 195
BmrFI CCNGG 6 cut(s) 10, 40, 179, 197, 305, 323
BpiI GAAGAC 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 4 cut(s) 10, 40, 197, 323
BsaAI YACGTR 2 cut(s) 277, 288
BsaHI GRCGYC 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 8 cut(s) 299, 329, 485, 491, 497, 515, 521, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 346
Bse118I RCCGGY 4 cut(s) 48, 107, 234, 527
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 179, 305
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 39, 346
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 25, 398
BseXI GCAGC 5 cut(s) 118, 131, 134, 281, 297
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 216, 271
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 55, 98, 303
BshTI ACCGGT 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 9 cut(s) 10, 25, 39, 49, 108, 197, 235, 323, 528
BslFI GGGAC 3 cut(s) 127, 179, 322
BslI CCNNNNNNNGG 2 cut(s) 39, 346
BsmFI GGGAC 3 cut(s) 127, 179, 322
BsnI GGCC 3 cut(s) 55, 98, 303
BsoBI CYCGRG 1 cut(s) 413
Bsp143I GATC 2 cut(s) 430, 522
BspANI GGCC 3 cut(s) 55, 98, 303
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 2 cut(s) 216, 271
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 44, 115, 195
BspMAI CTGCAG 1 cut(s) 315
BspPI GGATC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 287
BsrFI RCCGGY 4 cut(s) 48, 107, 234, 527
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 4 cut(s) 48, 107, 234, 527
BssMI GATC 2 cut(s) 430, 522
BssNI GRCGYC 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 179, 305
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 344
BstBAI YACGTR 2 cut(s) 277, 288
BstC8I GCNNGC 4 cut(s) 30, 50, 109, 236
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 216, 271
BstHHI GCGC 2 cut(s) 131, 273
BstKTI GATC 2 cut(s) 433, 525
BstMBI GATC 2 cut(s) 430, 522
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 7 cut(s) 58, 104, 128, 265, 277, 291, 300
BstNI CCWGG 2 cut(s) 179, 305
BstSCI CCNGG 6 cut(s) 8, 38, 177, 195, 303, 321
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 2 cut(s) 216, 271
BstV1I GCAGC 5 cut(s) 118, 131, 134, 281, 297
BstV2I GAAGAC 1 cut(s) 10
BsuRI GGCC 3 cut(s) 55, 98, 303
BtrI CACGTC 2 cut(s) 16, 73
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 4 cut(s) 30, 50, 109, 236
CciI TCATGA 1 cut(s) 219
CfoI GCGC 2 cut(s) 131, 273
Cfr10I RCCGGY 4 cut(s) 48, 107, 234, 527
Cfr13I GGNCC 3 cut(s) 88, 114, 193
CseI GACGC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 527
CviAII CATG 1 cut(s) 220
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 432, 524
DpnII GATC 2 cut(s) 430, 522
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 255
Eco47I GGWCC 3 cut(s) 88, 114, 193
Eco72I CACGTG 2 cut(s) 277, 288
Eco88I CYCGRG 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 177, 303
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 221, 533, 535
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 3 cut(s) 127, 179, 322
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 104
FbaI TGATCA 1 cut(s) 522
FokI GGATG 1 cut(s) 413
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 130, 272
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 3 cut(s) 55, 98, 303
HapII CCGG 9 cut(s) 10, 25, 39, 49, 108, 197, 235, 323, 528
HgaI GACGC 1 cut(s) 205
HhaI GCGC 2 cut(s) 131, 273
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 2 cut(s) 129, 271
HinP1I GCGC 2 cut(s) 129, 271
HinfI GANTC 3 cut(s) 335, 386, 406
HpaII CCGG 9 cut(s) 10, 25, 39, 49, 108, 197, 235, 323, 528
HphI GGTGA 3 cut(s) 67, 385, 517
Hpy188I TCNGA 3 cut(s) 349, 394, 471
Hpy188III TCNNGA 3 cut(s) 220, 250, 415
Hpy99I CGWCG 2 cut(s) 302, 349
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 5 cut(s) 15, 72, 276, 287, 344
HpyCH4V TGCA 5 cut(s) 84, 280, 285, 313, 364
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 104, 128, 265, 277, 291, 300
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 5 cut(s) 15, 72, 276, 287, 344
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 2 cut(s) 129, 271
KroI GCCGGC 3 cut(s) 48, 107, 234
KroNI GCCGGC 3 cut(s) 50, 109, 236
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 2 cut(s) 430, 522
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 5 cut(s) 118, 131, 134, 281, 297
MaeI CTAG 1 cut(s) 173
MaeII ACGT 5 cut(s) 15, 72, 276, 287, 344
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 432, 524
MboI GATC 2 cut(s) 430, 522
MboII GAAGA 4 cut(s) 10, 238, 254, 392
MlyI GAGTC 2 cut(s) 344, 395
MmeI TCCRAC 5 cut(s) 327, 516, 522, 528, 534
MnlI CCTC 9 cut(s) 32, 43, 46, 66, 216, 234, 376, 391, 493
MreI CGCCGGCG 2 cut(s) 48, 107
MroNI GCCGGC 3 cut(s) 48, 107, 234
MspI CCGG 9 cut(s) 10, 25, 39, 49, 108, 197, 235, 323, 528
MspR9I CCNGG 6 cut(s) 10, 40, 179, 197, 305, 323
MvaI CCWGG 2 cut(s) 179, 305
MvnI CGCG 2 cut(s) 216, 271
MwoI GCNNNNNNNGC 7 cut(s) 58, 104, 128, 265, 277, 291, 300
NaeI GCCGGC 3 cut(s) 50, 109, 236
NciI CCSGG 4 cut(s) 10, 40, 197, 323
NdeII GATC 2 cut(s) 430, 522
NgoMIV GCCGGC 3 cut(s) 48, 107, 234
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 3 cut(s) 44, 115, 195
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 413
PagI TCATGA 1 cut(s) 219
PdiI GCCGGC 3 cut(s) 50, 109, 236
PfeI GAWTC 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 527
PleI GAGTC 2 cut(s) 343, 394
PmaCI CACGTG 2 cut(s) 277, 288
PmlI CACGTG 2 cut(s) 277, 288
PpsI GAGTC 2 cut(s) 343, 394
Ppu21I YACGTR 2 cut(s) 277, 288
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 177, 303
PspCI CACGTG 2 cut(s) 277, 288
PspGI CCWGG 2 cut(s) 177, 303
PspN4I GGNNCC 3 cut(s) 44, 115, 195
PspPI GGNCC 3 cut(s) 88, 114, 193
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 1 cut(s) 315
Sau3AI GATC 2 cut(s) 430, 522
Sau96I GGNCC 3 cut(s) 88, 114, 193
SchI GAGTC 2 cut(s) 344, 395
ScrFI CCNGG 6 cut(s) 10, 40, 179, 197, 305, 323
SetI ASST 8 cut(s) 18, 75, 195, 279, 290, 312, 347, 414
SfcI CTRYAG 1 cut(s) 311
Sfr274I CTCGAG 1 cut(s) 413
SgrAI CRCCGGYG 2 cut(s) 48, 107
SinI GGWCC 3 cut(s) 88, 114, 193
SlaI CTCGAG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 6 cut(s) 8, 38, 177, 195, 303, 321
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 5 cut(s) 18, 75, 279, 290, 347
TaqI TCGA 2 cut(s) 333, 414
TauI GCSGC 6 cut(s) 55, 122, 213, 216, 271, 294
TfiI GAWTC 1 cut(s) 406
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 5 cut(s) 131, 144, 147, 294, 310
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 3 cut(s) 88, 114, 193
XhoI CTCGAG 1 cut(s) 413
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.