Rh1AG305600

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000151
Physical Location & Seq
Forward (+)
53835929 .. 53836219
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG305600.1

Sequence Viewer

Length: 291 bp
ATGTCTCCTCAAGAACTGAAAGCTGCTGTAGAACTAAATGGACGTTTTACCATAGAGTGTAAGGAAAAGTTACCTCGTCTCTCCGCAATTGACAATGTTACTGAAAGTCCCCAACTGATTGCATCTCACGTTAGAGCTGTCACAGAGGTTCTCTTCCAGCAGCAATTCGGAGATGAAATCTTAGATGAGCTCTTTGATTTGTACCGTACAAAACTTGAAGAGAAGCCTTCCATCTTTGACCCAACAAAGGCGATTAACTTTCTCGTTGTGCTTAAACTTCAAGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

96

Amino Acids

10.93

Weight (kDa)

4.93

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 92 1.1e-12 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AfaI GTAC 2 cut(s) 203, 208
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 2 cut(s) 218, 281
AluBI AGCT 3 cut(s) 23, 137, 190
AluI AGCT 3 cut(s) 23, 137, 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 9, 83
ApeKI GCWGC 2 cut(s) 23, 160
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 10, 172
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 9, 83
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 24, 161
BlsI GCNGC 2 cut(s) 25, 162
BmsI GCATC 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 10, 172
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 9, 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 158, 213
BstDEI CTNAG 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 9, 83
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 10, 172
Csp6I GTAC 2 cut(s) 202, 207
CviJI RGCY 4 cut(s) 23, 137, 190, 226
CviKI_1 RGCY 4 cut(s) 23, 137, 190, 226
CviQI GTAC 2 cut(s) 202, 207
DdeI CTNAG 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 158, 213
EarI CTCTTC 2 cut(s) 158, 213
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 83
FaiI YATR 1 cut(s) 53
FaqI GGGAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 24, 161
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 24, 161
GluI GCNGC 2 cut(s) 24, 161
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 43, 129
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 2 cut(s) 43, 129
LpnPI CCDG 1 cut(s) 170
Lsp1109I GCAGC 2 cut(s) 10, 172
LweI GCATC 1 cut(s) 131
MaeII ACGT 2 cut(s) 43, 129
MaeIII GTNAC 3 cut(s) 69, 97, 139
MboII GAAGA 2 cut(s) 145, 230
MfeI CAATTG 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 87, 164, 286
MnlI CCTC 3 cut(s) 18, 84, 139
MseI TTAA 2 cut(s) 255, 273
MunI CAATTG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 25, 162
Psp124BI GAGCTC 1 cut(s) 192
RsaI GTAC 2 cut(s) 203, 208
RsaNI GTAC 2 cut(s) 202, 207
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 255, 273
SatI GCNGC 2 cut(s) 24, 161
SduI GDGCHC 1 cut(s) 192
SetI ASST 7 cut(s) 25, 46, 76, 132, 139, 150, 192
SfaNI GCATC 1 cut(s) 131
SfcI CTRYAG 1 cut(s) 27
SgeI CNNG 6 cut(s) 23, 87, 140, 169, 227, 275
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 3 cut(s) 87, 164, 286
SsiI CCGC 1 cut(s) 84
SstI GAGCTC 1 cut(s) 192
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 2 cut(s) 46, 132
TasI AATT 3 cut(s) 87, 164, 286
Tru1I TTAA 2 cut(s) 255, 273
Tru9I TTAA 2 cut(s) 255, 273
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 23, 160
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.