Rh7CG020800

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000151
Physical Location & Seq
Forward (+)
1548942 .. 1550125
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG020800.1

Sequence Viewer

Length: 813 bp
ATGCTTCCGGCATATCCAATGCCATTCACCAGAACCATTTCTGTGTCAAGTAGTGGACTAGTAGTAGATATAAATTATGACGACCCCTACAATACAGGATGCAATACACAGAGAAACAGAGAGAACAAAGAGATGGCAGCAGAGAATACCAGTAAAGTCTTTGAAGCACATCCTATGAAAGGTGGAGATGGCCCCAATAGCTATACAAAAAACTCCATTCTGCAGAGAGCTTCTGTCGATGCTGCCAAAGAACTTCTGAACAAGGCAGTTGCAGAAAAGCTGGACATCAAAAGTTTCTTACCTTCCAAGTCTTTTCGCATTGCAGATCTGGGTTGCTCTACTGGACCAAATACTTTTATGGCAGTTGGAAACATACTTGAAGCTGTGGAGTCCGAGTATCGAAGCCAAGAGCTGAATTCTCAGATTCCCGAATTTCAAGTGTTCTTTAATGATCATGCCTCAAATGACTTTAACATGCTCTTCCAGTCCCTCCCTCAGAACAGGCAATACCATGCAGCCGGTGTACCTGGTTCTTTCTACAAACAGGTGTTACCTAATGCTTCCATTAACTTTGCTTACTCTTCTACTGCCATTCAATGGCTCTCTAGAGTACCAACAGCAGTAGCAGATAGTAATAGTCCTGCGTGGAACAAAGGACACATTCATTACTCAAATGCCACAGATGAAGTAATAAGGGCTTATGAAACTCAATATAGTGATGACATGGAGAGCTTCCTGCAAGCCAGGGCACAAGAGATTGTGTACGGAGGATTAATTGTACTTACATTTCCAGGCCGCCACAGTGACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

270

Amino Acids

29.96

Weight (kDa)

5.38

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 94 - 268 6.4e-69 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 597
AciI CCGC 1 cut(s) 796
AcsI RAATTY 2 cut(s) 415, 431
AfaI GTAC 4 cut(s) 525, 612, 764, 780
AfiI CCNNNNNNNGG 2 cut(s) 179, 597
AgsI TTSAA 4 cut(s) 164, 380, 437, 596
AhlI ACTAGT 1 cut(s) 58
AjnI CCWGG 3 cut(s) 526, 743, 790
AluBI AGCT 6 cut(s) 201, 230, 280, 383, 412, 732
AluI AGCT 6 cut(s) 201, 230, 280, 383, 412, 732
AoxI GGCC 2 cut(s) 190, 793
ApeKI GCWGC 3 cut(s) 137, 242, 515
ApoI RAATTY 2 cut(s) 415, 431
AseI ATTAAT 1 cut(s) 773
Asp700I GAANNNNTTC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 191, 344
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 751
BbvI GCAGC 3 cut(s) 149, 229, 527
BccI CCATC 2 cut(s) 127, 182
BciT130I CCWGG 3 cut(s) 528, 745, 792
BclI TGATCA 1 cut(s) 451
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 59, 606
BfmI CTRYAG 1 cut(s) 221
BglII AGATCT 1 cut(s) 325
BisI GCNGC 4 cut(s) 138, 243, 516, 796
BlsI GCNGC 4 cut(s) 139, 244, 517, 797
Bme1390I CCNGG 3 cut(s) 528, 745, 792
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 191, 344
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 3 cut(s) 528, 745, 792
BmsI GCATC 2 cut(s) 89, 229
BsaJI CCNNGG 1 cut(s) 744
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 597
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 3 cut(s) 150, 346, 484
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 3 cut(s) 528, 745, 792
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 2 cut(s) 104, 169
BseLI CCNNNNNNNGG 2 cut(s) 179, 597
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 434, 509
BseNI ACTGG 3 cut(s) 150, 346, 484
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 3 cut(s) 149, 229, 527
BshFI GGCC 2 cut(s) 192, 795
BsiSI CCGG 2 cut(s) 8, 519
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 179, 597
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 2 cut(s) 192, 795
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 2 cut(s) 325, 451
BspACI CCGC 1 cut(s) 796
BspANI GGCC 2 cut(s) 192, 795
BspCNI CTCAG 2 cut(s) 433, 508
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 3 cut(s) 150, 346, 484
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 1 cut(s) 744
BssMI GATC 2 cut(s) 325, 451
Bst2UI CCWGG 3 cut(s) 528, 745, 792
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 2 cut(s) 485, 586
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 2 cut(s) 420, 495
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 104, 169
BstKTI GATC 2 cut(s) 328, 454
BstMBI GATC 2 cut(s) 325, 451
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 3 cut(s) 528, 745, 792
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 526, 743, 790
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 751
BstV1I GCAGC 3 cut(s) 149, 229, 527
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 192, 795
BtsCI GGATG 2 cut(s) 104, 169
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 741
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 191, 344
CsiI ACCWGGT 1 cut(s) 526
Csp6I GTAC 4 cut(s) 524, 611, 763, 779
CviAII CATG 4 cut(s) 455, 475, 512, 724
CviQI GTAC 4 cut(s) 524, 611, 763, 779
DdeI CTNAG 2 cut(s) 420, 495
DpnI GATC 2 cut(s) 327, 453
DpnII GATC 2 cut(s) 325, 451
Eam1104I CTCTTC 2 cut(s) 485, 586
EarI CTCTTC 2 cut(s) 485, 586
Eco47I GGWCC 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 3 cut(s) 526, 743, 790
FaeI CATG 4 cut(s) 458, 478, 515, 727
FaqI GGGAC 1 cut(s) 472
FatI CATG 4 cut(s) 454, 474, 511, 723
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 138, 243, 516, 796
FokI GGATG 2 cut(s) 111, 156
Fsp4HI GCNGC 4 cut(s) 138, 243, 516, 796
FspBI CTAG 2 cut(s) 59, 606
GluI GCNGC 4 cut(s) 138, 243, 516, 796
HaeIII GGCC 2 cut(s) 192, 795
HapII CCGG 2 cut(s) 8, 519
Hin1II CATG 4 cut(s) 458, 478, 515, 727
HinfI GANTC 2 cut(s) 389, 424
HpaII CCGG 2 cut(s) 8, 519
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 56, 524, 763
Hpy188I TCNGA 4 cut(s) 258, 394, 423, 498
Hpy188III TCNNGA 2 cut(s) 428, 606
Hpy8I GTNNAC 3 cut(s) 56, 524, 763
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4V TGCA 6 cut(s) 102, 223, 272, 323, 515, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 420, 495
Hsp92II CATG 4 cut(s) 458, 478, 515, 727
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 2 cut(s) 325, 451
LguI GCTCTTC 1 cut(s) 485
Lsp1109I GCAGC 3 cut(s) 149, 229, 527
LweI GCATC 2 cut(s) 89, 229
MabI ACCWGGT 1 cut(s) 526
MaeI CTAG 2 cut(s) 59, 606
MaeIII GTNAC 2 cut(s) 549, 803
MalI GATC 2 cut(s) 327, 453
MboI GATC 2 cut(s) 325, 451
MboII GAAGA 2 cut(s) 472, 573
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 751
MluCI AATT 4 cut(s) 73, 415, 431, 774
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 4 cut(s) 469, 500, 504, 761
MroXI GAANNNNTTC 1 cut(s) 37
MseI TTAA 4 cut(s) 447, 471, 567, 773
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 2 cut(s) 8, 519
MspR9I CCNGG 3 cut(s) 528, 745, 792
MvaI CCWGG 3 cut(s) 528, 745, 792
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 325, 451
NlaIII CATG 4 cut(s) 458, 478, 515, 727
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 803
NspI RCATGY 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 597
PkrI GCNGC 4 cut(s) 139, 244, 517, 797
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 773
Psp6I CCWGG 3 cut(s) 526, 743, 790
PspGI CCWGG 3 cut(s) 526, 743, 790
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 191, 344
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PstI CTGCAG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 4 cut(s) 525, 612, 764, 780
RsaNI GTAC 4 cut(s) 524, 611, 763, 779
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 4 cut(s) 447, 471, 567, 773
SatI GCNGC 4 cut(s) 138, 243, 516, 796
Sau3AI GATC 2 cut(s) 325, 451
Sau96I GGNCC 2 cut(s) 191, 344
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 3 cut(s) 528, 745, 792
SduI GDGCHC 1 cut(s) 751
SexAI ACCWGGT 1 cut(s) 526
SfaNI GCATC 2 cut(s) 89, 229
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 4 cut(s) 73, 415, 431, 774
SsiI CCGC 1 cut(s) 796
SspMI CTAG 2 cut(s) 59, 606
StyD4I CCNGG 3 cut(s) 526, 743, 790
TaaI ACNGT 1 cut(s) 803
TaqI TCGA 2 cut(s) 237, 400
TasI AATT 4 cut(s) 73, 415, 431, 774
TatI WGTACW 1 cut(s) 778
TauI GCSGC 1 cut(s) 798
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 4 cut(s) 447, 471, 567, 773
Tru9I TTAA 4 cut(s) 447, 471, 567, 773
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 3 cut(s) 137, 242, 515
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 4 cut(s) 191, 653, 699, 717
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 344
VspI ATTAAT 1 cut(s) 773
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 415, 431
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 37
XspI CTAG 2 cut(s) 59, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.