Rroxscaffold_4G00323020

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
53620928 .. 53645772
24845 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00323020.1

Sequence Viewer

Length: 504 bp
ATGAGCTTGCAACTTCTTGGATCTTGCCTCATGGACTTGGGAGTTGTTAGCGAAGACAAGGTAGATTCATTCAACATGCCTGTGTATTCCATGTCACCTCAAGAACTTGAAGTTGCTCTCAAACGAAATGGATGCTTTAGCATAGACATAATGGCAGACATAACTCGTCCCTTGGTAGACGACACTCTTTCAATATCCCAGAAGATTGCTTCTCACATGAGAGCTTATTTCGAGGGGATGCTAAAGAAGCAATTTGGAGAAGAAATCTTAGATGAGTTCTTCGACTTGATTTATATAGAAATTGCAGTCATCATTGCAGAGCATATCAACAAACCTAGTTCATTGAGAGAGAAATTCCAAACTAAGACAAGAGAGCCGGAGAGAGGTAGAGCTGGGTTTCGTGCTTCACATGGCGAAGAGCGAGAGAGAATAGACCTCGGTGAAGGTTCTCGTGTGTTGAGGAGAGGGAGAGGAGGATCAGAGGAAGAAAATCCAAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

5.1

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 4 - 97 4.8e-19 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AclWI GGATC 2 cut(s) 28, 484
AcsI RAATTY 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 73, 110, 192
AluBI AGCT 3 cut(s) 6, 224, 392
AluI AGCT 3 cut(s) 6, 224, 392
AlwI GGATC 2 cut(s) 28, 484
ApoI RAATTY 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 87, 452
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BfaI CTAG 1 cut(s) 336
BmsI GCATC 2 cut(s) 122, 228
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 171, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 171, 436
BseGI GGATG 2 cut(s) 137, 243
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 475, 486
BseYI CCCAGC 1 cut(s) 392
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 20, 476
BspPI GGATC 2 cut(s) 28, 484
BspQI GCTCTTC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 171, 436
BssMI GATC 2 cut(s) 20, 476
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 268, 363
BstF5I GGATG 2 cut(s) 137, 243
BstKTI GATC 2 cut(s) 23, 479
BstMBI GATC 2 cut(s) 20, 476
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtsCI GGATG 2 cut(s) 137, 243
Cac8I GCNNGC 1 cut(s) 8
CviAII CATG 5 cut(s) 31, 76, 91, 217, 410
CviJI RGCY 4 cut(s) 6, 224, 376, 392
CviKI_1 RGCY 4 cut(s) 6, 224, 376, 392
DdeI CTNAG 2 cut(s) 268, 363
DpnI GATC 2 cut(s) 22, 478
DpnII GATC 2 cut(s) 20, 476
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 34, 79, 94, 220, 413
FaqI GGGAC 1 cut(s) 153
FatI CATG 5 cut(s) 30, 75, 90, 216, 409
FblI GTMKAC 1 cut(s) 177
FokI GGATG 2 cut(s) 144, 250
FspBI CTAG 1 cut(s) 336
GsaI CCCAGC 1 cut(s) 396
HapII CCGG 1 cut(s) 377
Hin1II CATG 5 cut(s) 34, 79, 94, 220, 413
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 377
HphI GGTGA 2 cut(s) 87, 452
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 437
HpyCH4V TGCA 3 cut(s) 10, 305, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 268, 363
Hsp92II CATG 5 cut(s) 34, 79, 94, 220, 413
Kzo9I GATC 2 cut(s) 20, 476
LguI GCTCTTC 1 cut(s) 411
LpnPI CCDG 4 cut(s) 93, 212, 378, 390
LweI GCATC 2 cut(s) 122, 228
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 93
MalI GATC 2 cut(s) 22, 478
MboI GATC 2 cut(s) 20, 476
MboII GAAGA 6 cut(s) 65, 214, 271, 272, 428, 497
MflI RGATCY 1 cut(s) 20
MluCI AATT 3 cut(s) 251, 300, 353
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 2 cut(s) 20, 476
NlaIII CATG 5 cut(s) 34, 79, 94, 220, 413
NmuCI GTSAC 1 cut(s) 93
NspI RCATGY 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 392
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 20, 476
SetI ASST 9 cut(s) 8, 63, 100, 226, 337, 388, 394, 438, 448
SfaNI GCATC 2 cut(s) 122, 228
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 3 cut(s) 251, 300, 353
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 171
TaqI TCGA 2 cut(s) 231, 282
TasI AATT 3 cut(s) 251, 300, 353
TfiI GAWTC 1 cut(s) 65
TseFI GTSAC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 57, 330
XapI RAATTY 1 cut(s) 353
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.